1E44A

Ribonuclease domain of colicin e3 in complex with its immunity protein
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
84
structure length
84
Chain Sequence
GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribonuclease
source organism Escherichia coli
publication title Inhibition of a Ribosome Inactivating Ribonuclease: The Crystal Structure of the Cytotoxic Domain of Colicin E3 in Complex with its Immunity Protein
pubmed doi rcsb
molecule keywords IMMUNITY PROTEIN
total genus 20
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2000-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 1e44A00
4UDMA 1JCHB 3EIPA 2B5UB 1E44A
chains in the Genus database with same CATH superfamily
1LL4A 4DRMA 4P8UA 1KT0A 1FKDA 3UF8A 1Q6UA 1FD9A 3ARZA 3W4RA 4JFMA 3IKDA 2WM0A 1WAWA 2FKEA 4ODMA 1HKKA 4NZCA 3B7XA 2DT1A 1W1VA 1BKFA 2KI3A 2D9FA 1J4IA 4DRHA 2ESCA 2PV2A 3CGMA 4MPKA 3CHEA 4IPXA 2N87A 2F4EA 2Y78A 1NMWA 4GIVA 1J4HA 1WB0A 1HJWA 1FKIA 5DIUA 1FKJA 4MSPA 4XAKA 1NWTA 2KE0A 4W5UA 4JFKA 1EDQA 4MNMA 3NI6A 2YBUA 3JYMA 1W9VA 4TW8A 4DIPA 1ZBWA 4MNKA 1GRJA 3O5QA 1W9PA 3O5EA 4TW7A 2RURA 3WD3A 4P8WA 1EIBA 3O5JA 4URIA 2RQSA 1QZ2A 3WIJA 4WIWA 3O5IA 4L3NA 3WD0A 5HKGA 1D6OA 3CHDA 4PTMA 4HARA 2LGOA 2UZ5A 4JFIA 3KABA 1EQ3A 4S3KA 3WQVA 1FKTA 3ARXA 3UQAA 1LG1A 2EULA 1E6ZA 2ZR6A 3PA7A 3ARSA 1NWUA 1M5YA 4JFJA 1HJXA 1N1AA 2ZQUA 4HBOA 1D7HA 1E6RA 4U84A 3KACA 3RM9A 1TFVA 3GPKA 4G50A 1FJDA 3PRBA 3IK8A 2K8IA 3O5KA 3IKGA 1FKLA 3WQWA 2RUQA 4DRJA 2LKNA 4J4OA 1NMVA 1O6IA 4WKHA 1ZBCA 2XP6A 1Y0OA 4Z2KA 1ZB5A 1H0IA 4FN2A 4WJXA 1GUVA 4Z2GA 2QF8A 4LAXA 1K9TA 3UI4A 1HKMA 3KAFA 4HBEA 4KR0B 2XPAA 2O92A 5HT1A 3RMEA 4Z2HA 3O5DA 2P4VA 1T11A 2PPPA 4MAVA 3G6MA 5HWBA 4DT4A 3ODKA 1HJVA 2A3AA 2KR7A 2M08A 2F2DA 2VCDA 3O5GA 2DSWA 4DWSC 3RGCA 2M1IA 2WK2A 2DG4A 1B6CA 4ZPVR 1ZL1A 1OWQA 2KFWA 2YBTA 2XP7A 5DITA 3AS1A 2PI6A 4DWSD 1CTNA 2IUZA 1LG2A 2G41A 4U86A 5GPRA 1UR8A 1X6NA 3CH9A 4WKAA 1FKRA 5HWCA 3GTYX 4MGVA 4ZPWR 2DSVA 2DPEA 2OFNA 3ALFA 5DO2A 4ML4A 2O9OA 1F40A 2MLYA 2Q5AA 4ODPA 4ODNA 3ARUA 3KADA 4ODRA 1FAPA 3ARWA 3H9RB 2PPOA 2RUDA 2AWGA 1ZBKA 5B8IC 3B8SA 4DRPA 3QOKA 4IT4A 3G6LA 4J4NA 1TCOC 1E6NA 1D2KA 1JNDA 2AOSA 2PN0A 1C9HA 2A3CA 3EIPA 4DZ3A 1FKHA 2WLZA 4U85A 3UI6A 2XP5A 4JFLA 3AQUA 4GGQA 4MNJA 3NRKA 2MF9A 1KT1A 4FAPA 4QIBA 1H0GA 3ARQA 3PRDA 2F21A 4DRQA 2JZVA 1LQ0A 1NH6A 4JYSA 4Z2IA 3RM8A 3ARPA 3FY1A 4Q7NA 3WL1A 2ETNA 2VN1A 3BXWA 2DT0A 1J4RA 3OA5A 4BF8A 1FKGA 4ODQA 3O5FA 1W1PA 3KZ7A 3JXVA 3ARRA 5HTGA 1NSGA 1YW5A 4DWSB 4MNLA 4QZVB 1R9HA 3UQBA 2ZR5A 3KCEA 5D75A 4Z2LA 1Q1CA 5DF0A 1ZU8A 3FAPA 4P8XA 1GPFA 1XRVA 4ZS6A 2RUCA 1IX5A 3VAWA 2MNTA 2DG3A 3WH0A 3UI5A 3O5PA 2DSZA 3CHCA 4S3JA 2PV1A 1UR9A 1JNEA 1P5QA 1L1PA 2A3EA 4O2TA 3UQIA 4G2PA 3PRAA 1FKFA 4DZ2A 2XP8A 1OGGA 2XPBA 4ITZA 1HXVA 4UDMA 4QT3A 2F23A 3O5LA 4AY1A 1ROTA 4ODKA 2B5UB 4NSBA 3OOBA 4LAWA 5I98A 5HUAA 5HBFA 2XP3A 4IT6A 4DRIA 1E44A 1JVWA 1E6PA 1ZK6A 3FXYA 4W9OA 1FKKA 1WNOA 2MPHA 4W9QA 2OLHA 1NWRA 1ROUA 2G8ZA 3WD4A 4NNRA 2B31A 2LJ4A 2L2SA 4P8VA 1ITXA 2DG9A 4TX0A 2MLXA 4R0XA 4DWSA 4WK9A 1QPFA 4DROA 1ZCNA 2PBCA 4TYOA 2ZQTA 4MTVA 1E15A 3PR9A 1JCHB 1W26A 1PBKA 3O5RA 3JYJA 2IF4A 3WD2A 3AS3A 4LGXA 3ARVA 4Z2JA 1YATA 1Q6IA 1FFQA 4IQ2A 3IHZA 4KQZA 5GPGA 1BL4A 1D7IA 2WLYA 1W9UA 1SR0A 1XHGA 3B9AA 4ZPTR 1A7XA 1JNTA 3TDBA 4ODOA 2M2AA 3ARTA 1JNSA 1NWSA 3CZ8A 2MLZA 4Q22A 5DEZA 1D7JA 2RSEA 3RM4A 3AS2A 3B9EA 2FAPA 1HKIA 1RD6A 1SYTA 3B9DA 3ALGA 4W9PA 1LJYA 1VF8A 4DRNA 2DT2A 3O5OA 3GU0A 1X6LA 4C02B 3WD1A 1Q6HA 4TNSA 1ZBVA 1FKSA 2FDMA 3CHFA 2DT3A 3WKZA 1OGBA 1EHNA 3KAGA 3CGNA 3ARYA 2XP4A 4TW6A 4ODLA 2A3BA 2ZQSA 3KAHA 2KGJA 1W1YA 5J6EA 2PPNA 3O5MA 5DIVA 1LL6A 4LAVA 5HW6A 5GQBA 4R5EA 2XP9A 3KAIA 3LUOA 1J6YA 1F8AB 1EYMA 1KFWA 3AROA 1U79A 4LAYA 4DH0A 2ZR4A 1W1TA 1HKJA 4L72B 1FFRA 5HW7A 1GOIA 4WKFA 1QPLA 3AS0A 3MDYB 4N19A 2ZQVA 2KO7A 1FKBA 3I6CA 1PINA 3TC5A 5BXJA 2ITKA 4IQCA 3NTPA 3EY6A 3WL0A 5HW8A 2PV3A 3BMBA 1E9LA 2LPVA 3RFWA 4QT2A 2DSUA 3TCZA 4DRKA 1LL7A 5JH8A
chains in the Genus database with same CATH topology
4UDMA 1JCHB 3EIPA 2B5UB 1E44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UDM A;  1JCH B;  3EIP A;  2B5U B;  1E44 A; 
#chains in the Genus database with same CATH topology
 1LL4 A;  4DRM A;  4P8U A;  1KT0 A;  1FKD A;  3UF8 A;  1Q6U A;  1FD9 A;  3ARZ A;  3W4R A;  4JFM A;  3IKD A;  2WM0 A;  1WAW A;  2FKE A;  4ODM A;  1HKK A;  4NZC A;  3B7X A;  2DT1 A;  1W1V A;  1BKF A;  2KI3 A;  2D9F A;  1J4I A;  4DRH A;  2ESC A;  2PV2 A;  3CGM A;  4MPK A;  3CHE A;  4IPX A;  2N87 A;  2F4E A;  2Y78 A;  1NMW A;  4GIV A;  1J4H A;  1WB0 A;  1HJW A;  1FKI A;  5DIU A;  1FKJ A;  4MSP A;  4XAK A;  1NWT A;  2KE0 A;  4W5U A;  4JFK A;  1EDQ A;  4MNM A;  3NI6 A;  2YBU A;  3JYM A;  1W9V A;  4TW8 A;  4DIP A;  1ZBW A;  4MNK A;  1GRJ A;  3O5Q A;  1W9P A;  3O5E A;  4TW7 A;  2RUR A;  3WD3 A;  4P8W A;  1EIB A;  3O5J A;  4URI A;  2RQS A;  1QZ2 A;  3WIJ A;  4WIW A;  3O5I A;  4L3N A;  3WD0 A;  5HKG A;  1D6O A;  3CHD A;  4PTM A;  4HAR A;  2LGO A;  2UZ5 A;  4JFI A;  3KAB A;  1EQ3 A;  4S3K A;  3WQV A;  1FKT A;  3ARX A;  3UQA A;  1LG1 A;  2EUL A;  1E6Z A;  2ZR6 A;  3PA7 A;  3ARS A;  1NWU A;  1M5Y A;  4JFJ A;  1HJX A;  1N1A A;  2ZQU A;  4HBO A;  1D7H A;  1E6R A;  4U84 A;  3KAC A;  3RM9 A;  1TFV A;  3GPK A;  4G50 A;  1FJD A;  3PRB A;  3IK8 A;  2K8I A;  3O5K A;  3IKG A;  1FKL A;  3WQW A;  2RUQ A;  4DRJ A;  2LKN A;  4J4O A;  1NMV A;  1O6I A;  4WKH A;  1ZBC A;  2XP6 A;  1Y0O A;  4Z2K A;  1ZB5 A;  1H0I A;  4FN2 A;  4WJX A;  1GUV A;  4Z2G A;  2QF8 A;  4LAX A;  1K9T A;  3UI4 A;  1HKM A;  3KAF A;  4HBE A;  4KR0 B;  2XPA A;  2O92 A;  5HT1 A;  3RME A;  4Z2H A;  3O5D A;  2P4V A;  1T11 A;  2PPP A;  4MAV A;  3G6M A;  5HWB A;  4DT4 A;  3ODK A;  1HJV A;  2A3A A;  2KR7 A;  2M08 A;  2F2D A;  2VCD A;  3O5G A;  2DSW A;  4DWS C;  3RGC A;  2M1I A;  2WK2 A;  2DG4 A;  1B6C A;  4ZPV R;  1ZL1 A;  1OWQ A;  2KFW A;  2YBT A;  2XP7 A;  5DIT A;  3AS1 A;  2PI6 A;  4DWS D;  1CTN A;  2IUZ A;  1LG2 A;  2G41 A;  4U86 A;  5GPR A;  1UR8 A;  1X6N A;  3CH9 A;  4WKA A;  1FKR A;  5HWC A;  3GTY X;  4MGV A;  4ZPW R;  2DSV A;  2DPE A;  2OFN A;  3ALF A;  5DO2 A;  4ML4 A;  2O9O A;  1F40 A;  2MLY A;  2Q5A A;  4ODP A;  4ODN A;  3ARU A;  3KAD A;  4ODR A;  1FAP A;  3ARW A;  3H9R B;  2PPO A;  2RUD A;  2AWG A;  1ZBK A;  5B8I C;  3B8S A;  4DRP A;  3QOK A;  4IT4 A;  3G6L A;  4J4N A;  1TCO C;  1E6N A;  1D2K A;  1JND A;  2AOS A;  2PN0 A;  1C9H A;  2A3C A;  3EIP A;  4DZ3 A;  1FKH A;  2WLZ A;  4U85 A;  3UI6 A;  2XP5 A;  4JFL A;  3AQU A;  4GGQ A;  4MNJ A;  3NRK A;  2MF9 A;  1KT1 A;  4FAP A;  4QIB A;  1H0G A;  3ARQ A;  3PRD A;  2F21 A;  4DRQ A;  2JZV A;  1LQ0 A;  1NH6 A;  4JYS A;  4Z2I A;  3RM8 A;  3ARP A;  3FY1 A;  4Q7N A;  3WL1 A;  2ETN A;  2VN1 A;  3BXW A;  2DT0 A;  1J4R A;  3OA5 A;  4BF8 A;  1FKG A;  4ODQ A;  3O5F A;  1W1P A;  3KZ7 A;  3JXV A;  3ARR A;  5HTG A;  1NSG A;  1YW5 A;  4DWS B;  4MNL A;  4QZV B;  1R9H A;  3UQB A;  2ZR5 A;  3KCE A;  5D75 A;  4Z2L A;  1Q1C A;  5DF0 A;  1ZU8 A;  3FAP A;  4P8X A;  1GPF A;  1XRV A;  4ZS6 A;  2RUC A;  1IX5 A;  3VAW A;  2MNT A;  2DG3 A;  3WH0 A;  3UI5 A;  3O5P A;  2DSZ A;  3CHC A;  4S3J A;  2PV1 A;  1UR9 A;  1JNE A;  1P5Q A;  1L1P A;  2A3E A;  4O2T A;  3UQI A;  4G2P A;  3PRA A;  1FKF A;  4DZ2 A;  2XP8 A;  1OGG A;  2XPB A;  4ITZ A;  1HXV A;  4UDM A;  4QT3 A;  2F23 A;  3O5L A;  4AY1 A;  1ROT A;  4ODK A;  2B5U B;  4NSB A;  3OOB A;  4LAW A;  5I98 A;  5HUA A;  5HBF A;  2XP3 A;  4IT6 A;  4DRI A;  1E44 A;  1JVW A;  1E6P A;  1ZK6 A;  3FXY A;  4W9O A;  1FKK A;  1WNO A;  2MPH A;  4W9Q A;  2OLH A;  1NWR A;  1ROU A;  2G8Z A;  3WD4 A;  4NNR A;  2B31 A;  2LJ4 A;  2L2S A;  4P8V A;  1ITX A;  2DG9 A;  4TX0 A;  2MLX A;  4R0X A;  4DWS A;  4WK9 A;  1QPF A;  4DRO A;  1ZCN A;  2PBC A;  4TYO A;  2ZQT A;  4MTV A;  1E15 A;  3PR9 A;  1JCH B;  1W26 A;  1PBK A;  3O5R A;  3JYJ A;  2IF4 A;  3WD2 A;  3AS3 A;  4LGX A;  3ARV A;  4Z2J A;  1YAT A;  1Q6I A;  1FFQ A;  4IQ2 A;  3IHZ A;  4KQZ A;  5GPG A;  1BL4 A;  1D7I A;  2WLY A;  1W9U A;  1SR0 A;  1XHG A;  3B9A A;  4ZPT R;  1A7X A;  1JNT A;  3TDB A;  4ODO A;  2M2A A;  3ART A;  1JNS A;  1NWS A;  3CZ8 A;  2MLZ A;  4Q22 A;  5DEZ A;  1D7J A;  2RSE A;  3RM4 A;  3AS2 A;  3B9E A;  2FAP A;  1HKI A;  1RD6 A;  1SYT A;  3B9D A;  3ALG A;  4W9P A;  1LJY A;  1VF8 A;  4DRN A;  2DT2 A;  3O5O A;  3GU0 A;  1X6L A;  4C02 B;  3WD1 A;  1Q6H A;  4TNS A;  1ZBV A;  1FKS A;  2FDM A;  3CHF A;  2DT3 A;  3WKZ A;  1OGB A;  1EHN A;  3KAG A;  3CGN A;  3ARY A;  2XP4 A;  4TW6 A;  4ODL A;  2A3B A;  2ZQS A;  3KAH A;  2KGJ A;  1W1Y A;  5J6E A;  2PPN A;  3O5M A;  5DIV A;  1LL6 A;  4LAV A;  5HW6 A;  5GQB A;  4R5E A;  2XP9 A;  3KAI A;  3LUO A;  1J6Y A;  1F8A B;  1EYM A;  1KFW A;  3ARO A;  1U79 A;  4LAY A;  4DH0 A;  2ZR4 A;  1W1T A;  1HKJ A;  4L72 B;  1FFR A;  5HW7 A;  1GOI A;  4WKF A;  1QPL A;  3AS0 A;  3MDY B;  4N19 A;  2ZQV A;  2KO7 A;  1FKB A;  3I6C A;  1PIN A;  3TC5 A;  5BXJ A;  2ITK A;  4IQC A;  3NTP A;  3EY6 A;  3WL0 A;  5HW8 A;  2PV3 A;  3BMB A;  1E9L A;  2LPV A;  3RFW A;  4QT2 A;  2DSU A;  3TCZ A;  4DRK A;  1LL7 A;  5JH8 A; 
#chains in the Genus database with same CATH homology
 4UDM A;  1JCH B;  3EIP A;  2B5U B;  1E44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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