1E44A

Ribonuclease domain of colicin e3 in complex with its immunity protein
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
84
structure length
84
Chain Sequence
b'GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Inhibition of a Ribosome Inactivating Ribonuclease: The Crystal Structure of the Cytotoxic Domain of Colicin E3 in Complex with its Immunity Protein
pubmed doi rcsb
molecule keywords IMMUNITY PROTEIN
source organism Escherichia coli
molecule tags Ribonuclease
total genus 20
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2000-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 1e44A00
2B5UB 1JCHB 4UDMA 3EIPA 1E44A
chains in the Genus database with same CATH superfamily
4JFJA 3IHZA 4L72B 4DRPA 4DH0A 1YW5A 1QZ2A 3KAHA 4DWSC 5HW6A 1IX5A 3RM9A 2KE0A 3WD2A 4Z2HA 5HUAA 1ZU8A 1L1PA 4J4NA 3G6LA 3OOBA 1ZBKA 2M1IA 2FDMA 3H9RB 1EIBA 1CTNA 1ITXA 1NWRA 4JFIA 4FN2A 4MNJA 4W9OA 4GGQA 4WKFA 2VCDA 3UI6A 4DRJA 3JYMA 4ODRA 1K9TA 4P8XA 3AQUA 5JH8A 1OWQA 2RSEA 2LGOA 2MNTA 3MDYB 2DT3A 1EQ3A 1FFRA 1FKSA 1JNDA 1JNSA 5I98A 2A3BA 4AY1A 1JCHB 1FKJA 1W1VA 2MLYA 1J4IA 2G41A 4UDMA 1HJVA 2A3CA 2PV1A 4ODNA 1BKFA 4IQ2A 4MGVA 4DIPA 2RUQA 1OGGA 1W9PA 3KABA 1W1PA 2K8IA 1GOIA 1C9HA 1OGBA 1X6NA 1E15A 5DEZA 3ARVA 5HT1A 5HWCA 3JYJA 3WL0A 2PN0A 1JVWA 3B7XA 3EY6A 3ARUA 1WAWA 3AS0A 4IT6A 1R9HA 3WH0A 1FKBA 3O5GA 4Z2IA 4ZS6A 1EHNA 3ALGA 2F21A 3FY1A 1W9VA 1E6RA 3KADA 4Q7NA 4Q22A 3IKDA 1D6OA 3EIPA 5DITA 2A3AA 3ALFA 3ARQA 4KR0B 4TX0A 4P8UA 4LAVA 4S3JA 3RFWA 3CGMA 3RM4A 2JZVA 3ARZA 5HWBA 1D7IA 1HXVA 3O5MA 4U84A 3PRDA 5DO2A 1FKLA 1A7XA 3B9AA 3O5QA 2XP6A 4J4OA 4WJXA 3O5IA 4DZ3A 1ZK6A 2VN1A 3B9EA 4WK9A 2IUZA 4MAVA 3KCEA 1NH6A 3UI5A 1H0GA 1NMVA 4R5EA 3NRKA 3NTPA 2F4EA 1HKKA 1UR9A 2M08A 2O9OA 3WQWA 1HKJA 2Y78A 2PV2A 1NSGA 1Y0OA 4HBOA 4Z2JA 1YATA 4TNSA 1FKRA 3AS3A 1SYTA 1Q1CA 3ARRA 4N19A 3FAPA 2LKNA 2O92A 3UQAA 3O5FA 1N1AA 1ZL1A 1NWTA 5GQBA 3ARYA 4JFLA 3CH9A 1JNTA 3LUOA 2WLYA 2KGJA 1HKIA 1FJDA 2ITKA 1XRVA 2KI3A 2WLZA 3PA7A 1E6PA 4W9PA 2KO7A 2DT1A 2XPBA 2OFNA 1LG1A 1BL4A 3O5DA 3WD1A 1X6LA 3ARWA 4NSBA 1VF8A 1HJWA 4MSPA 3WQVA 5B8IC 2DPEA 1GRJA 2B5UB 1F8AB 4DWSB 2ZQUA 3GU0A 2G8ZA 2MF9A 1U79A 4TW7A 4ML4A 3RGCA 4ZPWR 5DIVA 4QIBA 1E6NA 3WL1A 4MNKA 3KAFA 3O5JA 4LAYA 2DT0A 2UZ5A 4R0XA 4HBEA 1HKMA 4NNRA 3TC5A 2LPVA 2YBUA 1M5YA 3ODKA 1EDQA 2MLZA 4TW6A 2ZQVA 5GPGA 4ZPTR 4MNLA 4DRIA 1FKHA 1TFVA 1SR0A 2RURA 3CHFA 5J6EA 1ZCNA 1D7HA 4Z2KA 1FAPA 2PI6A 2D9FA 2ZR5A 3ARTA 2IF4A 1JNEA 2M2AA 3ARPA 3G6MA 4WKHA 1D7JA 1FKTA 2DSWA 4ODQA 3NI6A 2B31A 2F23A 1Q6UA 3O5EA 1FKDA 4IT4A 4ITZA 5HBFA 4QT2A 4DRQA 4MNMA 3BMBA 4TYOA 3WD3A 2RQSA 3CHCA 2EULA 2Q5AA 5DF0A 1W26A 2DSUA 2KR7A 1FD9A 4DZ2A 2DSZA 2N87A 4URIA 1E44A 2XP5A 1ZBWA 1ZBCA 4DWSD 4DRNA 3ARXA 3AS1A 1FKIA 3CGNA 4P8WA 1LQ0A 1E9LA 4O2TA 2ZR4A 2A3EA 1ZB5A 2WK2A 5GPRA 3IKGA 4PTMA 2XP4A 1RD6A 4DROA 1PBKA 1QPLA 3AS2A 2XP3A 3JXVA 2FAPA 1UR8A 1W9UA 3CHEA 3WD4A 3CZ8A 2DG3A 2YBTA 2ZR6A 2DG9A 1Q6HA 2DT2A 4C02B 5D75A 1T11A 3KAIA 4JYSA 3UQIA 3WIJA 2FKEA 4W9QA 3AROA 3UI4A 2LJ4A 2ZQTA 2ESCA 1H0IA 1LG2A 5DIUA 4GIVA 1P5QA 4DRKA 4TW8A 3GTYX 4LAWA 1PINA 1GPFA 1NMWA 3B8SA 2L2SA 4ODLA 1QPFA 3RMEA 4DRHA 2XP7A 4G2PA 4P8VA 4JFKA 2AWGA 2OLHA 4NZCA 2P4VA 2PPPA 3B9DA 2XP9A 3WD0A 5HTGA 4Z2LA 2PV3A 4MPKA 1WNOA 1F40A 1WB0A 1FKKA 1J4RA 1D2KA 3RM8A 4MTVA 3KACA 1NWSA 1KT1A 4FAPA 3W4RA 4DRMA 4DWSA 4U85A 2PPNA 3TCZA 1W1YA 4ODPA 4IPXA 5HW8A 2QF8A 1Q6IA 1KFWA 4Z2GA 1XHGA 2WM0A 2XPAA 4QZVB 4ODOA 1NWUA 1ZBVA 1LJYA 3PR9A 4HARA 1FFQA 3O5OA 2ETNA 2MLXA 3UF8A 5HKGA 3BXWA 2DG4A 4JFMA 5BXJA 4W5UA 2DSVA 1LL6A 3WKZA 4G50A 3CHDA 3O5PA 4WKAA 4ODMA 3O5KA 5HW7A 2F2DA 4DT4A 2MPHA 3KAGA 1FKFA 1J4HA 1E6ZA 4L3NA 3ARSA 4QT3A 2PPOA 3PRBA 1EYMA 3QOKA 1ROTA 4XAKA 2XP8A 3OA5A 2AOSA 3PRAA 3UQBA 3GPKA 3O5RA 2RUCA 3IK8A 2PBCA 3O5LA 2ZQSA 3I6CA 1FKGA 2RUDA 3KZ7A 1B6CA 4ZPVR 1J6YA 4ODKA 3VAWA 1GUVA 4KQZA 1W1TA 2KFWA 1O6IA 4WIWA 1ROUA 1LL4A 4U86A 1TCOC 1HJXA 3FXYA 4IQCA 4LAXA 1LL7A 1KT0A 4S3KA 4LGXA 3TDBA 4BF8A
chains in the Genus database with same CATH topology
2B5UB 1JCHB 4UDMA 3EIPA 1E44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B5U B;  1JCH B;  4UDM A;  3EIP A;  1E44 A; 
#chains in the Genus database with same CATH topology
 4JFJ A;  3IHZ A;  4L72 B;  4DRP A;  4DH0 A;  1YW5 A;  1QZ2 A;  3KAH A;  4DWS C;  5HW6 A;  1IX5 A;  3RM9 A;  2KE0 A;  3WD2 A;  4Z2H A;  5HUA A;  1ZU8 A;  1L1P A;  4J4N A;  3G6L A;  3OOB A;  1ZBK A;  2M1I A;  2FDM A;  3H9R B;  1EIB A;  1CTN A;  1ITX A;  1NWR A;  4JFI A;  4FN2 A;  4MNJ A;  4W9O A;  4GGQ A;  4WKF A;  2VCD A;  3UI6 A;  4DRJ A;  3JYM A;  4ODR A;  1K9T A;  4P8X A;  3AQU A;  5JH8 A;  1OWQ A;  2RSE A;  2LGO A;  2MNT A;  3MDY B;  2DT3 A;  1EQ3 A;  1FFR A;  1FKS A;  1JND A;  1JNS A;  5I98 A;  2A3B A;  4AY1 A;  1JCH B;  1FKJ A;  1W1V A;  2MLY A;  1J4I A;  2G41 A;  4UDM A;  1HJV A;  2A3C A;  2PV1 A;  4ODN A;  1BKF A;  4IQ2 A;  4MGV A;  4DIP A;  2RUQ A;  1OGG A;  1W9P A;  3KAB A;  1W1P A;  2K8I A;  1GOI A;  1C9H A;  1OGB A;  1X6N A;  1E15 A;  5DEZ A;  3ARV A;  5HT1 A;  5HWC A;  3JYJ A;  3WL0 A;  2PN0 A;  1JVW A;  3B7X A;  3EY6 A;  3ARU A;  1WAW A;  3AS0 A;  4IT6 A;  1R9H A;  3WH0 A;  1FKB A;  3O5G A;  4Z2I A;  4ZS6 A;  1EHN A;  3ALG A;  2F21 A;  3FY1 A;  1W9V A;  1E6R A;  3KAD A;  4Q7N A;  4Q22 A;  3IKD A;  1D6O A;  3EIP A;  5DIT A;  2A3A A;  3ALF A;  3ARQ A;  4KR0 B;  4TX0 A;  4P8U A;  4LAV A;  4S3J A;  3RFW A;  3CGM A;  3RM4 A;  2JZV A;  3ARZ A;  5HWB A;  1D7I A;  1HXV A;  3O5M A;  4U84 A;  3PRD A;  5DO2 A;  1FKL A;  1A7X A;  3B9A A;  3O5Q A;  2XP6 A;  4J4O A;  4WJX A;  3O5I A;  4DZ3 A;  1ZK6 A;  2VN1 A;  3B9E A;  4WK9 A;  2IUZ A;  4MAV A;  3KCE A;  1NH6 A;  3UI5 A;  1H0G A;  1NMV A;  4R5E A;  3NRK A;  3NTP A;  2F4E A;  1HKK A;  1UR9 A;  2M08 A;  2O9O A;  3WQW A;  1HKJ A;  2Y78 A;  2PV2 A;  1NSG A;  1Y0O A;  4HBO A;  4Z2J A;  1YAT A;  4TNS A;  1FKR A;  3AS3 A;  1SYT A;  1Q1C A;  3ARR A;  4N19 A;  3FAP A;  2LKN A;  2O92 A;  3UQA A;  3O5F A;  1N1A A;  1ZL1 A;  1NWT A;  5GQB A;  3ARY A;  4JFL A;  3CH9 A;  1JNT A;  3LUO A;  2WLY A;  2KGJ A;  1HKI A;  1FJD A;  2ITK A;  1XRV A;  2KI3 A;  2WLZ A;  3PA7 A;  1E6P A;  4W9P A;  2KO7 A;  2DT1 A;  2XPB A;  2OFN A;  1LG1 A;  1BL4 A;  3O5D A;  3WD1 A;  1X6L A;  3ARW A;  4NSB A;  1VF8 A;  1HJW A;  4MSP A;  3WQV A;  5B8I C;  2DPE A;  1GRJ A;  2B5U B;  1F8A B;  4DWS B;  2ZQU A;  3GU0 A;  2G8Z A;  2MF9 A;  1U79 A;  4TW7 A;  4ML4 A;  3RGC A;  4ZPW R;  5DIV A;  4QIB A;  1E6N A;  3WL1 A;  4MNK A;  3KAF A;  3O5J A;  4LAY A;  2DT0 A;  2UZ5 A;  4R0X A;  4HBE A;  1HKM A;  4NNR A;  3TC5 A;  2LPV A;  2YBU A;  1M5Y A;  3ODK A;  1EDQ A;  2MLZ A;  4TW6 A;  2ZQV A;  5GPG A;  4ZPT R;  4MNL A;  4DRI A;  1FKH A;  1TFV A;  1SR0 A;  2RUR A;  3CHF A;  5J6E A;  1ZCN A;  1D7H A;  4Z2K A;  1FAP A;  2PI6 A;  2D9F A;  2ZR5 A;  3ART A;  2IF4 A;  1JNE A;  2M2A A;  3ARP A;  3G6M A;  4WKH A;  1D7J A;  1FKT A;  2DSW A;  4ODQ A;  3NI6 A;  2B31 A;  2F23 A;  1Q6U A;  3O5E A;  1FKD A;  4IT4 A;  4ITZ A;  5HBF A;  4QT2 A;  4DRQ A;  4MNM A;  3BMB A;  4TYO A;  3WD3 A;  2RQS A;  3CHC A;  2EUL A;  2Q5A A;  5DF0 A;  1W26 A;  2DSU A;  2KR7 A;  1FD9 A;  4DZ2 A;  2DSZ A;  2N87 A;  4URI A;  1E44 A;  2XP5 A;  1ZBW A;  1ZBC A;  4DWS D;  4DRN A;  3ARX A;  3AS1 A;  1FKI A;  3CGN A;  4P8W A;  1LQ0 A;  1E9L A;  4O2T A;  2ZR4 A;  2A3E A;  1ZB5 A;  2WK2 A;  5GPR A;  3IKG A;  4PTM A;  2XP4 A;  1RD6 A;  4DRO A;  1PBK A;  1QPL A;  3AS2 A;  2XP3 A;  3JXV A;  2FAP A;  1UR8 A;  1W9U A;  3CHE A;  3WD4 A;  3CZ8 A;  2DG3 A;  2YBT A;  2ZR6 A;  2DG9 A;  1Q6H A;  2DT2 A;  4C02 B;  5D75 A;  1T11 A;  3KAI A;  4JYS A;  3UQI A;  3WIJ A;  2FKE A;  4W9Q A;  3ARO A;  3UI4 A;  2LJ4 A;  2ZQT A;  2ESC A;  1H0I A;  1LG2 A;  5DIU A;  4GIV A;  1P5Q A;  4DRK A;  4TW8 A;  3GTY X;  4LAW A;  1PIN A;  1GPF A;  1NMW A;  3B8S A;  2L2S A;  4ODL A;  1QPF A;  3RME A;  4DRH A;  2XP7 A;  4G2P A;  4P8V A;  4JFK A;  2AWG A;  2OLH A;  4NZC A;  2P4V A;  2PPP A;  3B9D A;  2XP9 A;  3WD0 A;  5HTG A;  4Z2L A;  2PV3 A;  4MPK A;  1WNO A;  1F40 A;  1WB0 A;  1FKK A;  1J4R A;  1D2K A;  3RM8 A;  4MTV A;  3KAC A;  1NWS A;  1KT1 A;  4FAP A;  3W4R A;  4DRM A;  4DWS A;  4U85 A;  2PPN A;  3TCZ A;  1W1Y A;  4ODP A;  4IPX A;  5HW8 A;  2QF8 A;  1Q6I A;  1KFW A;  4Z2G A;  1XHG A;  2WM0 A;  2XPA A;  4QZV B;  4ODO A;  1NWU A;  1ZBV A;  1LJY A;  3PR9 A;  4HAR A;  1FFQ A;  3O5O A;  2ETN A;  2MLX A;  3UF8 A;  5HKG A;  3BXW A;  2DG4 A;  4JFM A;  5BXJ A;  4W5U A;  2DSV A;  1LL6 A;  3WKZ A;  4G50 A;  3CHD A;  3O5P A;  4WKA A;  4ODM A;  3O5K A;  5HW7 A;  2F2D A;  4DT4 A;  2MPH A;  3KAG A;  1FKF A;  1J4H A;  1E6Z A;  4L3N A;  3ARS A;  4QT3 A;  2PPO A;  3PRB A;  1EYM A;  3QOK A;  1ROT A;  4XAK A;  2XP8 A;  3OA5 A;  2AOS A;  3PRA A;  3UQB A;  3GPK A;  3O5R A;  2RUC A;  3IK8 A;  2PBC A;  3O5L A;  2ZQS A;  3I6C A;  1FKG A;  2RUD A;  3KZ7 A;  1B6C A;  4ZPV R;  1J6Y A;  4ODK A;  3VAW A;  1GUV A;  4KQZ A;  1W1T A;  2KFW A;  1O6I A;  4WIW A;  1ROU A;  1LL4 A;  4U86 A;  1TCO C;  1HJX A;  3FXY A;  4IQC A;  4LAX A;  1LL7 A;  1KT0 A;  4S3K A;  4LGX A;  3TDB A;  4BF8 A; 
#chains in the Genus database with same CATH homology
 2B5U B;  1JCH B;  4UDM A;  3EIP A;  1E44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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