1JCHB

Crystal structure of colicin e3 in complex with its immunity protein
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
84
structure length
84
Chain Sequence
GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-10)TII'1 (25-28)TIV2 (11-14)TIV1 (10-13)EMPTYS2 (16-25)S4 (71-79)O1 (62-64)AH1 (29-35)TIV3 (39-42)S3 (48-49)3H1 (52-54)AH2 (55-58)3H2 (59-61)O2 (65-67)TIV5 (67-70)TII1 (42-45)Updating...
connected with : NaN
molecule tags Ribosome inhibitor, hydrolase
source organism Escherichia coli str. k12 substr.
publication title Crystal structure of colicin E3: implications for cell entry and ribosome inactivation.
pubmed doi rcsb
molecule keywords COLICIN E3
total genus 19
structure length 84
sequence length 84
chains with identical sequence D
ec nomenclature
pdb deposition date 2001-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 1jchB00
1E44A 2B5UB 4UDMA 3EIPA 1JCHB
chains in the Genus database with same CATH superfamily
3WD2A 1JNEA 3O5KA 4TYOA 1ROUA 1HKIA 4WKAA 2IF4A 1QPFA 1LL6A 1D7HA 4FN2A 3B9DA 3WD3A 1R9HA 1OWQA 3WIJA 3PRDA 4MTVA 1E15A 2DT1A 3AS0A 1JNSA 3RM8A 2G41A 1OGGA 3ARPA 3FXYA 1HKKA 2YBTA 3RM4A 3ARYA 4W9PA 1JCHB 1NMVA 2WLYA 1T11A 5HWBA 4MAVA 2ZQUA 2L2SA 2LPVA 4NSBA 1FKBA 1XRVA 2RURA 4ODRA 2B5UB 1ZK6A 3O5QA 1BL4A 4DRHA 4U86A 3FY1A 4QT3A 3O5JA 4DRIA 2OFNA 1FKFA 3RGCA 3RFWA 1W9VA 4HBOA 1PINA 4JFLA 2QF8A 4IPXA 3GPKA 1TFVA 1FKRA 1FFQA 1C9HA 1ZBCA 3TDBA 2ZQVA 2UZ5A 1J4HA 4LGXA 1FKGA 1E6PA 2DSWA 3UQIA 1FD9A 1D7JA 4ITZA 2WLZA 2KR7A 4P8UA 4BF8A 1ZCNA 4W9OA 1ROTA 5DITA 4DWSD 3QOKA 2RUCA 2N87A 1ITXA 3UI5A 1N1AA 3O5GA 1KT1A 2AWGA 3ALFA 4ZPTR 1FKKA 3UF8A 4DWSA 2LKNA 3KAIA 3CHEA 2PPNA 1KT0A 1QZ2A 2EULA 4Q22A 4JFMA 5I98A 5HWCA 1E6RA 2F23A 4IT4A 3EY6A 2O9OA 4MNMA 3G6LA 4ODKA 1FKDA 3JYMA 5GPRA 3TC5A 2MLYA 4U84A 5JH8A 2JZVA 2KO7A 2DG3A 1ZB5A 3TCZA 1EQ3A 3ARXA 2FDMA 4Z2JA 5DO2A 3W4RA 3O5LA 4L72B 4Z2KA 1Q6IA 1W1PA 2XP3A 3KCEA 2G8ZA 2DG9A 2M08A 4G50A 1HJVA 1P5QA 4LAXA 4R5EA 3IK8A 1NWTA 1FKSA 3ARRA 3IKGA 4J4NA 1EYMA 3CGMA 2O92A 2PPOA 3B8SA 2ZR5A 2A3AA 3B7XA 4IQ2A 2DSVA 3O5EA 1J6YA 4MNJA 4DRJA 1F40A 2DT2A 4O2TA 1SR0A 1RD6A 2RUQA 3EIPA 3WL1A 3RM9A 2MLXA 3O5IA 3UI4A 1FFRA 4JFKA 1HJWA 4DIPA 4DH0A 2LJ4A 4WK9A 2ZQTA 1IX5A 1NWSA 3JXVA 4ODOA 1EDQA 3KACA 3KABA 4DZ3A 1BKFA 3BXWA 1FKIA 3UQAA 2VN1A 4N19A 3ODKA 3AROA 4ZPWR 3ARWA 2ZR4A 4DRKA 3WD1A 3WKZA 2MPHA 1GPFA 3GTYX 3CH9A 2VCDA 1E6ZA 2DSZA 2PV1A 4LAYA 1LQ0A 1LL4A 5HW6A 1NSGA 2ZR6A 5DF0A 2FAPA 3PR9A 2KGJA 4WKFA 1YW5A 2PV3A 3O5OA 3CHCA 2M2AA 1Y0OA 1Q1CA 4DROA 1HJXA 2XP6A 4JFIA 3WD4A 1OGBA 4JYSA 4P8VA 4Q7NA 3WD0A 2F4EA 1KFWA 4R0XA 3ARQA 2LGOA 3NI6A 4QIBA 1NH6A 3VAWA 5B8IC 1UR9A 4NZCA 1GOIA 4L3NA 4W5UA 4MNKA 1Q6UA 3UI6A 3RMEA 4TW8A 4QT2A 4ZPVR 1GRJA 1LG1A 1ZBKA 2F2DA 3ARSA 3KAHA 1F8AB 1SYTA 2M1IA 2A3EA 4P8XA 3I6CA 4WJXA 3IHZA 4ODLA 1M5YA 4WIWA 3O5DA 3AS1A 1EIBA 1W26A 4TX0A 5DIVA 3OOBA 1TCOC 4Z2LA 1X6NA 3ALGA 4FAPA 4LAVA 2XP9A 2DG4A 4DRQA 1JVWA 4DRNA 4NNRA 2DSUA 4GGQA 2MF9A 1QPLA 4WKHA 4MSPA 4ZS6A 4C02B 4W9QA 1GUVA 1NWRA 4TW7A 2F21A 4DZ2A 4ODPA 2WK2A 1D7IA 4ML4A 1E9LA 3KAGA 3ARUA 4P8WA 1PBKA 1O6IA 2ZQSA 3O5RA 2ITKA 1JNDA 3ARTA 1L1PA 3IKDA 3MDYB 3B9EA 2OLHA 5HW8A 5DIUA 4JFJA 1WAWA 5D75A 1X6LA 3GU0A 1Q6HA 4IQCA 2AOSA 2Y78A 1FJDA 4ODMA 3NRKA 3NTPA 4XAKA 4DWSC 1J4RA 3LUOA 1HKJA 1E44A 2XP8A 3O5FA 2RUDA 4MPKA 4U85A 2DT3A 5HW7A 1NMWA 1H0IA 5J6EA 3WH0A 1W9UA 3CHFA 1J4IA 2B31A 5HTGA 1E6NA 1JNTA 1ZBWA 1LJYA 2PV2A 4URIA 3CGNA 1UR8A 3ARZA 3H9RB 2XP7A 3PA7A 4KQZA 2XPAA 3FAPA 4J4OA 1EHNA 1XHGA 1W9PA 2RSEA 2KI3A 3AS3A 1NWUA 3PRBA 3CZ8A 2DPEA 1CTNA 4AY1A 4ODQA 3JYJA 4TNSA 5HUAA 2KE0A 2D9FA 5GQBA 4TW6A 2FKEA 3WQWA 1ZL1A 4S3KA 5HKGA 4Z2IA 1ZU8A 5DEZA 4Z2GA 1FKJA 1LL7A 3WQVA 2WM0A 4GIVA 1W1TA 4QZVB 4DRMA 4DT4A 5GPGA 1D2KA 1B6CA 4HARA 1HXVA 3WL0A 1D6OA 2PI6A 1WB0A 4G2PA 2DT0A 3AQUA 1FKTA 2A3BA 1W1VA 3AS2A 2XPBA 3O5PA 1YATA 1FKLA 1A7XA 3OA5A 1K9TA 5HT1A 3G6MA 2KFWA 2PPPA 2RQSA 4PTMA 3KAFA 4MGVA 4LAWA 1HKMA 3BMBA 4Z2HA 2MLZA 3O5MA 1FAPA 1LG2A 2IUZA 2K8IA 4MNLA 1VF8A 2Q5AA 4HBEA 2MNTA 1FKHA 2XP4A 1ZBVA 1U79A 2P4VA 4DWSB 2PN0A 4DRPA 3CHDA 4ODNA 4UDMA 1W1YA 5HBFA 2ETNA 4IT6A 2XP5A 2ESCA 4S3JA 5BXJA 3PRAA 2PBCA 4KR0B 2A3CA 3UQBA 3B9AA 3KADA 3ARVA 1WNOA 1H0GA 3KZ7A 2YBUA
chains in the Genus database with same CATH topology
1E44A 2B5UB 4UDMA 3EIPA 1JCHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E44 A;  2B5U B;  4UDM A;  3EIP A;  1JCH B; 
#chains in the Genus database with same CATH topology
 3WD2 A;  1JNE A;  3O5K A;  4TYO A;  1ROU A;  1HKI A;  4WKA A;  2IF4 A;  1QPF A;  1LL6 A;  1D7H A;  4FN2 A;  3B9D A;  3WD3 A;  1R9H A;  1OWQ A;  3WIJ A;  3PRD A;  4MTV A;  1E15 A;  2DT1 A;  3AS0 A;  1JNS A;  3RM8 A;  2G41 A;  1OGG A;  3ARP A;  3FXY A;  1HKK A;  2YBT A;  3RM4 A;  3ARY A;  4W9P A;  1JCH B;  1NMV A;  2WLY A;  1T11 A;  5HWB A;  4MAV A;  2ZQU A;  2L2S A;  2LPV A;  4NSB A;  1FKB A;  1XRV A;  2RUR A;  4ODR A;  2B5U B;  1ZK6 A;  3O5Q A;  1BL4 A;  4DRH A;  4U86 A;  3FY1 A;  4QT3 A;  3O5J A;  4DRI A;  2OFN A;  1FKF A;  3RGC A;  3RFW A;  1W9V A;  4HBO A;  1PIN A;  4JFL A;  2QF8 A;  4IPX A;  3GPK A;  1TFV A;  1FKR A;  1FFQ A;  1C9H A;  1ZBC A;  3TDB A;  2ZQV A;  2UZ5 A;  1J4H A;  4LGX A;  1FKG A;  1E6P A;  2DSW A;  3UQI A;  1FD9 A;  1D7J A;  4ITZ A;  2WLZ A;  2KR7 A;  4P8U A;  4BF8 A;  1ZCN A;  4W9O A;  1ROT A;  5DIT A;  4DWS D;  3QOK A;  2RUC A;  2N87 A;  1ITX A;  3UI5 A;  1N1A A;  3O5G A;  1KT1 A;  2AWG A;  3ALF A;  4ZPT R;  1FKK A;  3UF8 A;  4DWS A;  2LKN A;  3KAI A;  3CHE A;  2PPN A;  1KT0 A;  1QZ2 A;  2EUL A;  4Q22 A;  4JFM A;  5I98 A;  5HWC A;  1E6R A;  2F23 A;  4IT4 A;  3EY6 A;  2O9O A;  4MNM A;  3G6L A;  4ODK A;  1FKD A;  3JYM A;  5GPR A;  3TC5 A;  2MLY A;  4U84 A;  5JH8 A;  2JZV A;  2KO7 A;  2DG3 A;  1ZB5 A;  3TCZ A;  1EQ3 A;  3ARX A;  2FDM A;  4Z2J A;  5DO2 A;  3W4R A;  3O5L A;  4L72 B;  4Z2K A;  1Q6I A;  1W1P A;  2XP3 A;  3KCE A;  2G8Z A;  2DG9 A;  2M08 A;  4G50 A;  1HJV A;  1P5Q A;  4LAX A;  4R5E A;  3IK8 A;  1NWT A;  1FKS A;  3ARR A;  3IKG A;  4J4N A;  1EYM A;  3CGM A;  2O92 A;  2PPO A;  3B8S A;  2ZR5 A;  2A3A A;  3B7X A;  4IQ2 A;  2DSV A;  3O5E A;  1J6Y A;  4MNJ A;  4DRJ A;  1F40 A;  2DT2 A;  4O2T A;  1SR0 A;  1RD6 A;  2RUQ A;  3EIP A;  3WL1 A;  3RM9 A;  2MLX A;  3O5I A;  3UI4 A;  1FFR A;  4JFK A;  1HJW A;  4DIP A;  4DH0 A;  2LJ4 A;  4WK9 A;  2ZQT A;  1IX5 A;  1NWS A;  3JXV A;  4ODO A;  1EDQ A;  3KAC A;  3KAB A;  4DZ3 A;  1BKF A;  3BXW A;  1FKI A;  3UQA A;  2VN1 A;  4N19 A;  3ODK A;  3ARO A;  4ZPW R;  3ARW A;  2ZR4 A;  4DRK A;  3WD1 A;  3WKZ A;  2MPH A;  1GPF A;  3GTY X;  3CH9 A;  2VCD A;  1E6Z A;  2DSZ A;  2PV1 A;  4LAY A;  1LQ0 A;  1LL4 A;  5HW6 A;  1NSG A;  2ZR6 A;  5DF0 A;  2FAP A;  3PR9 A;  2KGJ A;  4WKF A;  1YW5 A;  2PV3 A;  3O5O A;  3CHC A;  2M2A A;  1Y0O A;  1Q1C A;  4DRO A;  1HJX A;  2XP6 A;  4JFI A;  3WD4 A;  1OGB A;  4JYS A;  4P8V A;  4Q7N A;  3WD0 A;  2F4E A;  1KFW A;  4R0X A;  3ARQ A;  2LGO A;  3NI6 A;  4QIB A;  1NH6 A;  3VAW A;  5B8I C;  1UR9 A;  4NZC A;  1GOI A;  4L3N A;  4W5U A;  4MNK A;  1Q6U A;  3UI6 A;  3RME A;  4TW8 A;  4QT2 A;  4ZPV R;  1GRJ A;  1LG1 A;  1ZBK A;  2F2D A;  3ARS A;  3KAH A;  1F8A B;  1SYT A;  2M1I A;  2A3E A;  4P8X A;  3I6C A;  4WJX A;  3IHZ A;  4ODL A;  1M5Y A;  4WIW A;  3O5D A;  3AS1 A;  1EIB A;  1W26 A;  4TX0 A;  5DIV A;  3OOB A;  1TCO C;  4Z2L A;  1X6N A;  3ALG A;  4FAP A;  4LAV A;  2XP9 A;  2DG4 A;  4DRQ A;  1JVW A;  4DRN A;  4NNR A;  2DSU A;  4GGQ A;  2MF9 A;  1QPL A;  4WKH A;  4MSP A;  4ZS6 A;  4C02 B;  4W9Q A;  1GUV A;  1NWR A;  4TW7 A;  2F21 A;  4DZ2 A;  4ODP A;  2WK2 A;  1D7I A;  4ML4 A;  1E9L A;  3KAG A;  3ARU A;  4P8W A;  1PBK A;  1O6I A;  2ZQS A;  3O5R A;  2ITK A;  1JND A;  3ART A;  1L1P A;  3IKD A;  3MDY B;  3B9E A;  2OLH A;  5HW8 A;  5DIU A;  4JFJ A;  1WAW A;  5D75 A;  1X6L A;  3GU0 A;  1Q6H A;  4IQC A;  2AOS A;  2Y78 A;  1FJD A;  4ODM A;  3NRK A;  3NTP A;  4XAK A;  4DWS C;  1J4R A;  3LUO A;  1HKJ A;  1E44 A;  2XP8 A;  3O5F A;  2RUD A;  4MPK A;  4U85 A;  2DT3 A;  5HW7 A;  1NMW A;  1H0I A;  5J6E A;  3WH0 A;  1W9U A;  3CHF A;  1J4I A;  2B31 A;  5HTG A;  1E6N A;  1JNT A;  1ZBW A;  1LJY A;  2PV2 A;  4URI A;  3CGN A;  1UR8 A;  3ARZ A;  3H9R B;  2XP7 A;  3PA7 A;  4KQZ A;  2XPA A;  3FAP A;  4J4O A;  1EHN A;  1XHG A;  1W9P A;  2RSE A;  2KI3 A;  3AS3 A;  1NWU A;  3PRB A;  3CZ8 A;  2DPE A;  1CTN A;  4AY1 A;  4ODQ A;  3JYJ A;  4TNS A;  5HUA A;  2KE0 A;  2D9F A;  5GQB A;  4TW6 A;  2FKE A;  3WQW A;  1ZL1 A;  4S3K A;  5HKG A;  4Z2I A;  1ZU8 A;  5DEZ A;  4Z2G A;  1FKJ A;  1LL7 A;  3WQV A;  2WM0 A;  4GIV A;  1W1T A;  4QZV B;  4DRM A;  4DT4 A;  5GPG A;  1D2K A;  1B6C A;  4HAR A;  1HXV A;  3WL0 A;  1D6O A;  2PI6 A;  1WB0 A;  4G2P A;  2DT0 A;  3AQU A;  1FKT A;  2A3B A;  1W1V A;  3AS2 A;  2XPB A;  3O5P A;  1YAT A;  1FKL A;  1A7X A;  3OA5 A;  1K9T A;  5HT1 A;  3G6M A;  2KFW A;  2PPP A;  2RQS A;  4PTM A;  3KAF A;  4MGV A;  4LAW A;  1HKM A;  3BMB A;  4Z2H A;  2MLZ A;  3O5M A;  1FAP A;  1LG2 A;  2IUZ A;  2K8I A;  4MNL A;  1VF8 A;  2Q5A A;  4HBE A;  2MNT A;  1FKH A;  2XP4 A;  1ZBV A;  1U79 A;  2P4V A;  4DWS B;  2PN0 A;  4DRP A;  3CHD A;  4ODN A;  4UDM A;  1W1Y A;  5HBF A;  2ETN A;  4IT6 A;  2XP5 A;  2ESC A;  4S3J A;  5BXJ A;  3PRA A;  2PBC A;  4KR0 B;  2A3C A;  3UQB A;  3B9A A;  3KAD A;  3ARV A;  1WNO A;  1H0G A;  3KZ7 A;  2YBU A; 
#chains in the Genus database with same CATH homology
 1E44 A;  2B5U B;  4UDM A;  3EIP A;  1JCH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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