2B5UB

Crystal structure of colicin e3 v206c mutant in complex with its immunity protein
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
84
structure length
84
Chain Sequence
GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-10)TII'1 (25-28)TI1 (11-14)EMPTYTIV1 (10-13)S2 (16-25)S4 (71-79)AH1 (29-35)TII1 (39-42)TIV2 (42-45)S3 (47-49)3H1 (52-54)AH2 (55-58)3H2 (59-61)TI2 (67-70)Updating...
connected with : NaN
molecule tags Ribosome inhibitor, hydrolase
source organism Escherichia coli
publication title Crystal Structure Of Colicin E3 In Complex With Its Immunity Protein
rcsb
molecule keywords Colicin E3
total genus 20
structure length 84
sequence length 84
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 2b5uB00
2B5UB 1JCHB 1E44A 4UDMA 3EIPA
chains in the Genus database with same CATH superfamily
3LUOA 4DRNA 5HKGA 4ODQA 2PBCA 4P8XA 1A7XA 2A3BA 4G50A 1E6PA 3O5EA 4WJXA 1ZU8A 1L1PA 5DITA 3NTPA 4IPXA 1WB0A 4O2TA 1ZB5A 2KE0A 1BL4A 1C9HA 3ARZA 2RUDA 1CTNA 4Z2GA 4G2PA 1QPLA 3KAIA 1LL7A 1ZBKA 2L2SA 2KR7A 2PV2A 1WAWA 1R9HA 4N19A 3IHZA 2B31A 4DRHA 2PI6A 3QOKA 2RUQA 2K8IA 4WK9A 3FAPA 3BXWA 1E6RA 3CH9A 2PPOA 3CGMA 2XP9A 1EIBA 3JXVA 2PPNA 2QF8A 1FKKA 2DPEA 4TX0A 1T11A 5HTGA 1E6NA 3WIJA 5HW8A 3GU0A 4KR0B 3UQBA 2AOSA 2DT2A 4GGQA 3AS0A 1XRVA 4ZS6A 4W5UA 1SYTA 1X6NA 4W9PA 3UQIA 5BXJA 2ZQVA 4DH0A 3RFWA 4JFLA 1FKIA 1FFQA 3G6LA 2F2DA 1Q6UA 3TC5A 1ROUA 4LAWA 2WK2A 1FKSA 3B9EA 2DG4A 1W1YA 3AQUA 1TCOC 2IF4A 3AROA 3RM9A 1JNTA 4AY1A 3ARVA 2DT0A 3IK8A 2ZQUA 4L3NA 4DRQA 3IKGA 3UF8A 1U79A 4ITZA 2M08A 5J6EA 1O6IA 4NSBA 3O5JA 4Z2JA 2ZQTA 3WKZA 1HKIA 4JFMA 3GTYX 1J4IA 2ITKA 1W1PA 3JYJA 2PV1A 2EULA 1NH6A 2A3AA 4IQ2A 2AWGA 3UI6A 3CHFA 4IQCA 1EDQA 4UDMA 1YW5A 5HT1A 3CZ8A 3NI6A 1EYMA 3CHCA 2DT3A 1Q6IA 2XP7A 3WD2A 4PTMA 1TFVA 4MNMA 1OGBA 3EY6A 4MPKA 1GUVA 4DIPA 3ARTA 3BMBA 1LJYA 4IT6A 4QZVB 2XP3A 4FAPA 1E44A 2PN0A 1WNOA 3O5KA 3FY1A 1F40A 4MNKA 1NWUA 2DT1A 3PA7A 2D9FA 2XP4A 3KAHA 1UR9A 4XAKA 4P8UA 1NSGA 2WLZA 3O5PA 1QPFA 1UR8A 3PRDA 4C02B 3ARPA 4U84A 3WL1A 1B6CA 1FKHA 4QIBA 4FN2A 1FAPA 1RD6A 2OFNA 4MNLA 2XPBA 1J4RA 3KCEA 4DZ3A 4ODPA 1GRJA 1FJDA 2ETNA 1ITXA 2RSEA 5HW7A 4ML4A 3PRBA 3PR9A 4DRKA 3UQAA 1LL4A 5GPGA 3W4RA 2G8ZA 5GQBA 4JFKA 2F21A 1PINA 3AS3A 4LAXA 3UI4A 1OWQA 1FKFA 1XHGA 3I6CA 1KT1A 3O5RA 3AS2A 1SR0A 3O5QA 1Y0OA 4P8VA 1ZBWA 1D6OA 3O5OA 3RMEA 4BF8A 1LQ0A 1E9LA 1D7IA 3O5GA 5HW6A 2M1IA 1N1AA 3ALGA 2ZR4A 4TW6A 5HUAA 1ZBVA 2F23A 2MPHA 4MNJA 1F8AB 4J4OA 1JNEA 1D2KA 5D75A 3WQWA 1E15A 3O5LA 1NWRA 2UZ5A 2LPVA 5JH8A 3ALFA 4U86A 4WIWA 4DWSD 2JZVA 3FXYA 4R5EA 3WD0A 1W1TA 1HKJA 5I98A 5HWCA 2PV3A 4W9QA 1HKMA 3O5IA 4ZPTR 1HJVA 3KAFA 4HBOA 4QT3A 2ZQSA 4WKFA 4WKHA 2XPAA 2OLHA 4W9OA 5DIUA 3B7XA 2G41A 2RQSA 3CHEA 1IX5A 4S3KA 4DRIA 4ODKA 1W9PA 4ODLA 1OGGA 4TW8A 4Z2IA 1NMWA 5DEZA 4P8WA 2ZR6A 4Z2KA 3GPKA 3G6MA 3ARXA 2YBUA 4QT2A 1W26A 1H0GA 3ARWA 4MTVA 1J4HA 1HJXA 1W9VA 4U85A 1FD9A 4ODRA 2KI3A 4DROA 3VAWA 1LL6A 4JYSA 4DT4A 1ZL1A 1FKTA 2MF9A 1FKDA 2XP5A 4LAVA 2PPPA 2RUCA 4MGVA 5GPRA 3WD4A 1JCHB 2IUZA 1LG1A 3O5DA 2A3CA 1D7JA 2XP8A 3CGNA 2B5UB 1P5QA 1FKLA 4WKAA 4Q22A 2DSZA 3CHDA 2DSWA 4HARA 3WH0A 2VN1A 1M5YA 4MAVA 1FKJA 1FKGA 3OOBA 3EIPA 1JNSA 1KFWA 2VCDA 4LAYA 4DWSB 5DIVA 2M2AA 3WD3A 1Q6HA 3WD1A 3TCZA 2DSUA 3KACA 1ZK6A 1QZ2A 1ZBCA 4GIVA 4TNSA 3B9DA 1KT0A 2YBTA 1NWTA 2LKNA 1FKRA 2FKEA 2LGOA 2Q5AA 5B8IC 1K9TA 1ZCNA 3AS1A 1Q1CA 2MLZA 2KO7A 1J6YA 1GOIA 4J4NA 1W9UA 1NWSA 2N87A 1FFRA 3B9AA 2RURA 1HJWA 3KABA 2DG3A 4IT4A 3B8SA 2KGJA 2MLYA 4DWSC 3NRKA 3ARSA 2FDMA 2LJ4A 1HKKA 3KZ7A 5DO2A 2MNTA 1PBKA 2MLXA 3RGCA 4Z2HA 1LG2A 4ZPWR 4DRMA 4DZ2A 4ZPVR 3ARUA 3IKDA 4JFIA 2A3EA 4TW7A 3H9RB 5HWBA 1X6LA 4JFJA 1EQ3A 1D7HA 2XP6A 3WL0A 4LGXA 1GPFA 1HXVA 3KAGA 2P4VA 2WM0A 4MSPA 2WLYA 2ZR5A 4ODNA 4Q7NA 3RM4A 4DWSA 4L72B 1JVWA 3JYMA 2O9OA 3O5FA 2FAPA 2Y78A 4KQZA 4NNRA 1H0IA 2F4EA 4URIA 3RM8A 4S3JA 4TYOA 4DRPA 3ARRA 3TDBA 1W1VA 3MDYB 1BKFA 4ODMA 4ODOA 3O5MA 3WQVA 3UI5A 4DRJA 3ARYA 2O92A 2KFWA 2DG9A 1VF8A 1E6ZA 5DF0A 2DSVA 2ESCA 4HBEA 1ROTA 1YATA 3OA5A 3ODKA 1FKBA 5HBFA 4R0XA 1EHNA 1JNDA 1NMVA 3ARQA 3PRAA 4NZCA 4Z2LA 3KADA
chains in the Genus database with same CATH topology
2B5UB 1JCHB 1E44A 4UDMA 3EIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B5U B;  1JCH B;  1E44 A;  4UDM A;  3EIP A; 
#chains in the Genus database with same CATH topology
 3LUO A;  4DRN A;  5HKG A;  4ODQ A;  2PBC A;  4P8X A;  1A7X A;  2A3B A;  4G50 A;  1E6P A;  3O5E A;  4WJX A;  1ZU8 A;  1L1P A;  5DIT A;  3NTP A;  4IPX A;  1WB0 A;  4O2T A;  1ZB5 A;  2KE0 A;  1BL4 A;  1C9H A;  3ARZ A;  2RUD A;  1CTN A;  4Z2G A;  4G2P A;  1QPL A;  3KAI A;  1LL7 A;  1ZBK A;  2L2S A;  2KR7 A;  2PV2 A;  1WAW A;  1R9H A;  4N19 A;  3IHZ A;  2B31 A;  4DRH A;  2PI6 A;  3QOK A;  2RUQ A;  2K8I A;  4WK9 A;  3FAP A;  3BXW A;  1E6R A;  3CH9 A;  2PPO A;  3CGM A;  2XP9 A;  1EIB A;  3JXV A;  2PPN A;  2QF8 A;  1FKK A;  2DPE A;  4TX0 A;  1T11 A;  5HTG A;  1E6N A;  3WIJ A;  5HW8 A;  3GU0 A;  4KR0 B;  3UQB A;  2AOS A;  2DT2 A;  4GGQ A;  3AS0 A;  1XRV A;  4ZS6 A;  4W5U A;  1SYT A;  1X6N A;  4W9P A;  3UQI A;  5BXJ A;  2ZQV A;  4DH0 A;  3RFW A;  4JFL A;  1FKI A;  1FFQ A;  3G6L A;  2F2D A;  1Q6U A;  3TC5 A;  1ROU A;  4LAW A;  2WK2 A;  1FKS A;  3B9E A;  2DG4 A;  1W1Y A;  3AQU A;  1TCO C;  2IF4 A;  3ARO A;  3RM9 A;  1JNT A;  4AY1 A;  3ARV A;  2DT0 A;  3IK8 A;  2ZQU A;  4L3N A;  4DRQ A;  3IKG A;  3UF8 A;  1U79 A;  4ITZ A;  2M08 A;  5J6E A;  1O6I A;  4NSB A;  3O5J A;  4Z2J A;  2ZQT A;  3WKZ A;  1HKI A;  4JFM A;  3GTY X;  1J4I A;  2ITK A;  1W1P A;  3JYJ A;  2PV1 A;  2EUL A;  1NH6 A;  2A3A A;  4IQ2 A;  2AWG A;  3UI6 A;  3CHF A;  4IQC A;  1EDQ A;  4UDM A;  1YW5 A;  5HT1 A;  3CZ8 A;  3NI6 A;  1EYM A;  3CHC A;  2DT3 A;  1Q6I A;  2XP7 A;  3WD2 A;  4PTM A;  1TFV A;  4MNM A;  1OGB A;  3EY6 A;  4MPK A;  1GUV A;  4DIP A;  3ART A;  3BMB A;  1LJY A;  4IT6 A;  4QZV B;  2XP3 A;  4FAP A;  1E44 A;  2PN0 A;  1WNO A;  3O5K A;  3FY1 A;  1F40 A;  4MNK A;  1NWU A;  2DT1 A;  3PA7 A;  2D9F A;  2XP4 A;  3KAH A;  1UR9 A;  4XAK A;  4P8U A;  1NSG A;  2WLZ A;  3O5P A;  1QPF A;  1UR8 A;  3PRD A;  4C02 B;  3ARP A;  4U84 A;  3WL1 A;  1B6C A;  1FKH A;  4QIB A;  4FN2 A;  1FAP A;  1RD6 A;  2OFN A;  4MNL A;  2XPB A;  1J4R A;  3KCE A;  4DZ3 A;  4ODP A;  1GRJ A;  1FJD A;  2ETN A;  1ITX A;  2RSE A;  5HW7 A;  4ML4 A;  3PRB A;  3PR9 A;  4DRK A;  3UQA A;  1LL4 A;  5GPG A;  3W4R A;  2G8Z A;  5GQB A;  4JFK A;  2F21 A;  1PIN A;  3AS3 A;  4LAX A;  3UI4 A;  1OWQ A;  1FKF A;  1XHG A;  3I6C A;  1KT1 A;  3O5R A;  3AS2 A;  1SR0 A;  3O5Q A;  1Y0O A;  4P8V A;  1ZBW A;  1D6O A;  3O5O A;  3RME A;  4BF8 A;  1LQ0 A;  1E9L A;  1D7I A;  3O5G A;  5HW6 A;  2M1I A;  1N1A A;  3ALG A;  2ZR4 A;  4TW6 A;  5HUA A;  1ZBV A;  2F23 A;  2MPH A;  4MNJ A;  1F8A B;  4J4O A;  1JNE A;  1D2K A;  5D75 A;  3WQW A;  1E15 A;  3O5L A;  1NWR A;  2UZ5 A;  2LPV A;  5JH8 A;  3ALF A;  4U86 A;  4WIW A;  4DWS D;  2JZV A;  3FXY A;  4R5E A;  3WD0 A;  1W1T A;  1HKJ A;  5I98 A;  5HWC A;  2PV3 A;  4W9Q A;  1HKM A;  3O5I A;  4ZPT R;  1HJV A;  3KAF A;  4HBO A;  4QT3 A;  2ZQS A;  4WKF A;  4WKH A;  2XPA A;  2OLH A;  4W9O A;  5DIU A;  3B7X A;  2G41 A;  2RQS A;  3CHE A;  1IX5 A;  4S3K A;  4DRI A;  4ODK A;  1W9P A;  4ODL A;  1OGG A;  4TW8 A;  4Z2I A;  1NMW A;  5DEZ A;  4P8W A;  2ZR6 A;  4Z2K A;  3GPK A;  3G6M A;  3ARX A;  2YBU A;  4QT2 A;  1W26 A;  1H0G A;  3ARW A;  4MTV A;  1J4H A;  1HJX A;  1W9V A;  4U85 A;  1FD9 A;  4ODR A;  2KI3 A;  4DRO A;  3VAW A;  1LL6 A;  4JYS A;  4DT4 A;  1ZL1 A;  1FKT A;  2MF9 A;  1FKD A;  2XP5 A;  4LAV A;  2PPP A;  2RUC A;  4MGV A;  5GPR A;  3WD4 A;  1JCH B;  2IUZ A;  1LG1 A;  3O5D A;  2A3C A;  1D7J A;  2XP8 A;  3CGN A;  2B5U B;  1P5Q A;  1FKL A;  4WKA A;  4Q22 A;  2DSZ A;  3CHD A;  2DSW A;  4HAR A;  3WH0 A;  2VN1 A;  1M5Y A;  4MAV A;  1FKJ A;  1FKG A;  3OOB A;  3EIP A;  1JNS A;  1KFW A;  2VCD A;  4LAY A;  4DWS B;  5DIV A;  2M2A A;  3WD3 A;  1Q6H A;  3WD1 A;  3TCZ A;  2DSU A;  3KAC A;  1ZK6 A;  1QZ2 A;  1ZBC A;  4GIV A;  4TNS A;  3B9D A;  1KT0 A;  2YBT A;  1NWT A;  2LKN A;  1FKR A;  2FKE A;  2LGO A;  2Q5A A;  5B8I C;  1K9T A;  1ZCN A;  3AS1 A;  1Q1C A;  2MLZ A;  2KO7 A;  1J6Y A;  1GOI A;  4J4N A;  1W9U A;  1NWS A;  2N87 A;  1FFR A;  3B9A A;  2RUR A;  1HJW A;  3KAB A;  2DG3 A;  4IT4 A;  3B8S A;  2KGJ A;  2MLY A;  4DWS C;  3NRK A;  3ARS A;  2FDM A;  2LJ4 A;  1HKK A;  3KZ7 A;  5DO2 A;  2MNT A;  1PBK A;  2MLX A;  3RGC A;  4Z2H A;  1LG2 A;  4ZPW R;  4DRM A;  4DZ2 A;  4ZPV R;  3ARU A;  3IKD A;  4JFI A;  2A3E A;  4TW7 A;  3H9R B;  5HWB A;  1X6L A;  4JFJ A;  1EQ3 A;  1D7H A;  2XP6 A;  3WL0 A;  4LGX A;  1GPF A;  1HXV A;  3KAG A;  2P4V A;  2WM0 A;  4MSP A;  2WLY A;  2ZR5 A;  4ODN A;  4Q7N A;  3RM4 A;  4DWS A;  4L72 B;  1JVW A;  3JYM A;  2O9O A;  3O5F A;  2FAP A;  2Y78 A;  4KQZ A;  4NNR A;  1H0I A;  2F4E A;  4URI A;  3RM8 A;  4S3J A;  4TYO A;  4DRP A;  3ARR A;  3TDB A;  1W1V A;  3MDY B;  1BKF A;  4ODM A;  4ODO A;  3O5M A;  3WQV A;  3UI5 A;  4DRJ A;  3ARY A;  2O92 A;  2KFW A;  2DG9 A;  1VF8 A;  1E6Z A;  5DF0 A;  2DSV A;  2ESC A;  4HBE A;  1ROT A;  1YAT A;  3OA5 A;  3ODK A;  1FKB A;  5HBF A;  4R0X A;  1EHN A;  1JND A;  1NMV A;  3ARQ A;  3PRA A;  4NZC A;  4Z2L A;  3KAD A; 
#chains in the Genus database with same CATH homology
 2B5U B;  1JCH B;  1E44 A;  4UDM A;  3EIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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