3EIP | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	84
structure length	84
Chain Sequence	GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Escherichia coli str. k12 substr.
publication title	Crystal structure of colicin E3 immunity protein: an inhibitor of a ribosome-inactivating RNase. pubmed doi rcsb
molecule keywords	PROTEIN (COLICIN E3 IMMUNITY PROTEIN)
total genus	18
structure length	84
sequence length	84
chains with identical sequence	B
ec nomenclature
pdb deposition date	1999-03-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03513	Cloacin_immun	Cloacin immunity protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.50.20	Alpha Beta	Roll	Chitinase A; domain 3	Cloacin immunity protein	3eipA00

4UDMA 3EIPA 2B5UB 1E44A 1JCHB
chains in the Genus database with same CATH superfamily

1FKSA 2XP6A 5DITA 5D75A 2O9OA 3JXVA 3LUOA 5J6EA 3CZ8A 4LAVA 3ARUA 4WKAA 1ITXA 2ZR5A 1X6LA 1M5YA 1B6CA 1QPFA 4Z2JA 2KO7A 3IKGA 1UR9A 2MLYA 3KCEA 2PPPA 2K8IA 2XP3A 1NWTA 3WIJA 3PRBA 4TX0A 4DT4A 3ARXA 1NSGA 3CH9A 5HUAA 3GU0A 5DIVA 3VAWA 1HJXA 1LQ0A 1W1YA 3IKDA 1E6PA 1ZBCA 3KZ7A 4DRQA 4URIA 2A3CA 2MPHA 5BXJA 5HTGA 5B8IC 1ROUA 1FKRA 2LGOA 2ITKA 2KGJA 1J4RA 2G8ZA 4Z2GA 4DH0A 3UQIA 1JNDA 1OWQA 1ZCNA 3CGNA 1NMWA 3WH0A 3BXWA 3NRKA 1GRJA 1RD6A 2O92A 3RM9A 1EDQA 2F4EA 4G2PA 3TC5A 2M08A 1ZB5A 2MF9A 4UDMA 2ZR4A 3PR9A 3O5EA 1T11A 1BKFA 1ZK6A 1O6IA 3CHEA 4W9OA 1EIBA 4P8WA 2PI6A 1H0IA 3JYMA 3ARYA 4JFJA 2XP4A 3KAGA 4WK9A 4BF8A 3O5JA 4P8VA 1LJYA 4DZ2A 4WIWA 4ITZA 4U86A 1P5QA 3O5PA 1FFQA 1C9HA 3AROA 4FN2A 4FAPA 1ZL1A 1XHGA 2PV1A 3OOBA 4ML4A 3WD3A 1D7HA 2A3EA 3UI5A 2YBTA 2P4VA 1FKGA 1HJVA 2IUZA 3RGCA 1JVWA 4DWSD 1HKIA 4DRMA 1E15A 2KE0A 1KFWA 3B9AA 5JH8A 2UZ5A 4QT3A 3UQAA 4JYSA 2RUDA 3B9EA 2MLXA 3FAPA 1N1AA 4WKFA 3NI6A 4LAWA 1FJDA 4DRKA 4R5EA 3O5RA 4DRIA 3ARSA 1W9UA 3AS1A 4WKHA 5GPGA 4ODMA 1JNEA 2DT3A 1ZBKA 4XAKA 1ZBWA 5GPRA 3WL0A 1J4HA 5DO2A 2DT1A 2KFWA 4ZS6A 2IF4A 3B9DA 3MDYB 4L3NA 3UI4A 1J6YA 4JFIA 2LPVA 4IPXA 1OGBA 3IHZA 4DWSC 4W9QA 3FXYA 1FKDA 1ROTA 4IQCA 5HWCA 4DIPA 3ARZA 4DWSB 4O2TA 1KT0A 1E44A 4Z2LA 1OGGA 1E6RA 1FKKA 3AS2A 4GIVA 3NTPA 1D7IA 4TNSA 2PPOA 5DF0A 3RFWA 1W9VA 4JFMA 3ARPA 2RUQA 2DG3A 2D9FA 4R0XA 2ZR6A 2M1IA 1JNSA 2DT0A 3CHDA 3QOKA 4DRHA 1LG2A 3IK8A 1YW5A 2XP8A 1TCOC 1SR0A 3ODKA 4LAXA 1H0GA 1FFRA 2KR7A 4ODKA 4MTVA 2XPBA 4ZPVR 1IX5A 1XRVA 1HKJA 3RM8A 2F2DA 4DRPA 4WJXA 1ZBVA 1Q6UA 3ARVA 4KQZA 4HBEA 4DRJA 3PRDA 1QZ2A 2RSEA 2WLZA 1WAWA 4QT2A 2DSZA 2LJ4A 2Y78A 3O5LA 1GUVA 3KABA 3O5OA 4MNJA 2AWGA 4TYOA 1FKHA 5HWBA 4S3KA 2PV2A 4TW8A 2M2AA 5DEZA 4IT4A 1FD9A 1FKJA 3OA5A 3GPKA 1F40A 1W1PA 3B8SA 3CHCA 4C02B 3O5QA 3WD0A 2DG9A 2DG4A 2DSUA 1NH6A 3WL1A 2A3AA 1FKBA 3KAFA 4TW7A 1LL6A 5HW6A 3EY6A 3O5IA 1Q6IA 2XP7A 4MPKA 3ALFA 1CTNA 3PA7A 1PINA 4HBOA 1W26A 1HKKA 3ARQA 1HKMA 2XP9A 1E9LA 3JYJA 2QF8A 2F21A 3WQVA 3UF8A 3CGMA 2ZQSA 3H9RB 1GOIA 4NZCA 4ODQA 5HKGA 3AS0A 4N19A 2OFNA 3O5FA 1LL7A 4G50A 3RMEA 1D6OA 1EHNA 1JNTA 3ALGA 5I98A 1GPFA 5HT1A 5HW8A 3WKZA 2JZVA 1HXVA 3AQUA 1YATA 2DPEA 2FAPA 2ZQVA 3O5MA 4KR0B 5HW7A 4S3JA 2RQSA 4HARA 5GQBA 1ZU8A 1WNOA 4P8XA 2VN1A 1JCHB 4LAYA 4IT6A 2XPAA 1R9HA 1QPLA 4GGQA 4ODRA 3KACA 4NNRA 3AS3A 4QZVB 1E6ZA 4Z2HA 3ARWA 1FKFA 2ESCA 2OLHA 2A3BA 2WLYA 3B7XA 2XP5A 2RUCA 4MNMA 1FKLA 1L1PA 4Z2IA 2ETNA 4MAVA 4Z2KA 2F23A 2AOSA 4MGVA 1BL4A 1NWUA 2Q5AA 1LG1A 2B31A 3W4RA 3WD4A 4ODLA 4ZPWR 4DRNA 1D7JA 3O5GA 3KAHA 3GTYX 3UQBA 4PTMA 1W9PA 2YBUA 5DIUA 4ODNA 2EULA 3PRAA 3EIPA 1W1TA 1Q6HA 1W1VA 2ZQTA 4JFKA 3UI6A 4NSBA 3TDBA 4ODOA 3G6LA 1SYTA 1EYMA 2WK2A 2FKEA 1PBKA 2DSWA 3KADA 4W9PA 4J4OA 5HBFA 1FKTA 4U85A 4ODPA 1A7XA 2PN0A 1EQ3A 4J4NA 1U79A 1NWRA 4LGXA 1LL4A 1F8AB 2WM0A 4MSPA 4Q22A 4DZ3A 1VF8A 4U84A 2DT2A 3O5KA 4DWSA 4P8UA 4Q7NA 3WQWA 1E6NA 3I6CA 4MNLA 4JFLA 2LKNA 1Q1CA 1UR8A 1NMVA 3FY1A 1HJWA 1FAPA 1NWSA 3RM4A 3ARTA 4TW6A 2RURA 3BMBA 4W5UA 4MNKA 4L72B 3CHFA 2MLZA 4ZPTR 1D2KA 2KI3A 2DSVA 2VCDA 2B5UB 3KAIA 4DROA 1K9TA 3WD1A 3G6MA 1TFVA 4QIBA 2MNTA 2PV3A 2N87A 3O5DA 2L2SA 3TCZA 3WD2A 2PBCA 3ARRA 2FDMA 4IQ2A 1WB0A 2PPNA 1Y0OA 1X6NA 1KT1A 4AY1A 1J4IA 2ZQUA 1FKIA 2G41A
chains in the Genus database with same CATH topology

4UDMA 3EIPA 2B5UB 1E44A 1JCHB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4UDM A;  3EIP A;  2B5U B;  1E44 A;  1JCH B; 
#chains in the Genus database with same CATH topology
 1FKS A;  2XP6 A;  5DIT A;  5D75 A;  2O9O A;  3JXV A;  3LUO A;  5J6E A;  3CZ8 A;  4LAV A;  3ARU A;  4WKA A;  1ITX A;  2ZR5 A;  1X6L A;  1M5Y A;  1B6C A;  1QPF A;  4Z2J A;  2KO7 A;  3IKG A;  1UR9 A;  2MLY A;  3KCE A;  2PPP A;  2K8I A;  2XP3 A;  1NWT A;  3WIJ A;  3PRB A;  4TX0 A;  4DT4 A;  3ARX A;  1NSG A;  3CH9 A;  5HUA A;  3GU0 A;  5DIV A;  3VAW A;  1HJX A;  1LQ0 A;  1W1Y A;  3IKD A;  1E6P A;  1ZBC A;  3KZ7 A;  4DRQ A;  4URI A;  2A3C A;  2MPH A;  5BXJ A;  5HTG A;  5B8I C;  1ROU A;  1FKR A;  2LGO A;  2ITK A;  2KGJ A;  1J4R A;  2G8Z A;  4Z2G A;  4DH0 A;  3UQI A;  1JND A;  1OWQ A;  1ZCN A;  3CGN A;  1NMW A;  3WH0 A;  3BXW A;  3NRK A;  1GRJ A;  1RD6 A;  2O92 A;  3RM9 A;  1EDQ A;  2F4E A;  4G2P A;  3TC5 A;  2M08 A;  1ZB5 A;  2MF9 A;  4UDM A;  2ZR4 A;  3PR9 A;  3O5E A;  1T11 A;  1BKF A;  1ZK6 A;  1O6I A;  3CHE A;  4W9O A;  1EIB A;  4P8W A;  2PI6 A;  1H0I A;  3JYM A;  3ARY A;  4JFJ A;  2XP4 A;  3KAG A;  4WK9 A;  4BF8 A;  3O5J A;  4P8V A;  1LJY A;  4DZ2 A;  4WIW A;  4ITZ A;  4U86 A;  1P5Q A;  3O5P A;  1FFQ A;  1C9H A;  3ARO A;  4FN2 A;  4FAP A;  1ZL1 A;  1XHG A;  2PV1 A;  3OOB A;  4ML4 A;  3WD3 A;  1D7H A;  2A3E A;  3UI5 A;  2YBT A;  2P4V A;  1FKG A;  1HJV A;  2IUZ A;  3RGC A;  1JVW A;  4DWS D;  1HKI A;  4DRM A;  1E15 A;  2KE0 A;  1KFW A;  3B9A A;  5JH8 A;  2UZ5 A;  4QT3 A;  3UQA A;  4JYS A;  2RUD A;  3B9E A;  2MLX A;  3FAP A;  1N1A A;  4WKF A;  3NI6 A;  4LAW A;  1FJD A;  4DRK A;  4R5E A;  3O5R A;  4DRI A;  3ARS A;  1W9U A;  3AS1 A;  4WKH A;  5GPG A;  4ODM A;  1JNE A;  2DT3 A;  1ZBK A;  4XAK A;  1ZBW A;  5GPR A;  3WL0 A;  1J4H A;  5DO2 A;  2DT1 A;  2KFW A;  4ZS6 A;  2IF4 A;  3B9D A;  3MDY B;  4L3N A;  3UI4 A;  1J6Y A;  4JFI A;  2LPV A;  4IPX A;  1OGB A;  3IHZ A;  4DWS C;  4W9Q A;  3FXY A;  1FKD A;  1ROT A;  4IQC A;  5HWC A;  4DIP A;  3ARZ A;  4DWS B;  4O2T A;  1KT0 A;  1E44 A;  4Z2L A;  1OGG A;  1E6R A;  1FKK A;  3AS2 A;  4GIV A;  3NTP A;  1D7I A;  4TNS A;  2PPO A;  5DF0 A;  3RFW A;  1W9V A;  4JFM A;  3ARP A;  2RUQ A;  2DG3 A;  2D9F A;  4R0X A;  2ZR6 A;  2M1I A;  1JNS A;  2DT0 A;  3CHD A;  3QOK A;  4DRH A;  1LG2 A;  3IK8 A;  1YW5 A;  2XP8 A;  1TCO C;  1SR0 A;  3ODK A;  4LAX A;  1H0G A;  1FFR A;  2KR7 A;  4ODK A;  4MTV A;  2XPB A;  4ZPV R;  1IX5 A;  1XRV A;  1HKJ A;  3RM8 A;  2F2D A;  4DRP A;  4WJX A;  1ZBV A;  1Q6U A;  3ARV A;  4KQZ A;  4HBE A;  4DRJ A;  3PRD A;  1QZ2 A;  2RSE A;  2WLZ A;  1WAW A;  4QT2 A;  2DSZ A;  2LJ4 A;  2Y78 A;  3O5L A;  1GUV A;  3KAB A;  3O5O A;  4MNJ A;  2AWG A;  4TYO A;  1FKH A;  5HWB A;  4S3K A;  2PV2 A;  4TW8 A;  2M2A A;  5DEZ A;  4IT4 A;  1FD9 A;  1FKJ A;  3OA5 A;  3GPK A;  1F40 A;  1W1P A;  3B8S A;  3CHC A;  4C02 B;  3O5Q A;  3WD0 A;  2DG9 A;  2DG4 A;  2DSU A;  1NH6 A;  3WL1 A;  2A3A A;  1FKB A;  3KAF A;  4TW7 A;  1LL6 A;  5HW6 A;  3EY6 A;  3O5I A;  1Q6I A;  2XP7 A;  4MPK A;  3ALF A;  1CTN A;  3PA7 A;  1PIN A;  4HBO A;  1W26 A;  1HKK A;  3ARQ A;  1HKM A;  2XP9 A;  1E9L A;  3JYJ A;  2QF8 A;  2F21 A;  3WQV A;  3UF8 A;  3CGM A;  2ZQS A;  3H9R B;  1GOI A;  4NZC A;  4ODQ A;  5HKG A;  3AS0 A;  4N19 A;  2OFN A;  3O5F A;  1LL7 A;  4G50 A;  3RME A;  1D6O A;  1EHN A;  1JNT A;  3ALG A;  5I98 A;  1GPF A;  5HT1 A;  5HW8 A;  3WKZ A;  2JZV A;  1HXV A;  3AQU A;  1YAT A;  2DPE A;  2FAP A;  2ZQV A;  3O5M A;  4KR0 B;  5HW7 A;  4S3J A;  2RQS A;  4HAR A;  5GQB A;  1ZU8 A;  1WNO A;  4P8X A;  2VN1 A;  1JCH B;  4LAY A;  4IT6 A;  2XPA A;  1R9H A;  1QPL A;  4GGQ A;  4ODR A;  3KAC A;  4NNR A;  3AS3 A;  4QZV B;  1E6Z A;  4Z2H A;  3ARW A;  1FKF A;  2ESC A;  2OLH A;  2A3B A;  2WLY A;  3B7X A;  2XP5 A;  2RUC A;  4MNM A;  1FKL A;  1L1P A;  4Z2I A;  2ETN A;  4MAV A;  4Z2K A;  2F23 A;  2AOS A;  4MGV A;  1BL4 A;  1NWU A;  2Q5A A;  1LG1 A;  2B31 A;  3W4R A;  3WD4 A;  4ODL A;  4ZPW R;  4DRN A;  1D7J A;  3O5G A;  3KAH A;  3GTY X;  3UQB A;  4PTM A;  1W9P A;  2YBU A;  5DIU A;  4ODN A;  2EUL A;  3PRA A;  3EIP A;  1W1T A;  1Q6H A;  1W1V A;  2ZQT A;  4JFK A;  3UI6 A;  4NSB A;  3TDB A;  4ODO A;  3G6L A;  1SYT A;  1EYM A;  2WK2 A;  2FKE A;  1PBK A;  2DSW A;  3KAD A;  4W9P A;  4J4O A;  5HBF A;  1FKT A;  4U85 A;  4ODP A;  1A7X A;  2PN0 A;  1EQ3 A;  4J4N A;  1U79 A;  1NWR A;  4LGX A;  1LL4 A;  1F8A B;  2WM0 A;  4MSP A;  4Q22 A;  4DZ3 A;  1VF8 A;  4U84 A;  2DT2 A;  3O5K A;  4DWS A;  4P8U A;  4Q7N A;  3WQW A;  1E6N A;  3I6C A;  4MNL A;  4JFL A;  2LKN A;  1Q1C A;  1UR8 A;  1NMV A;  3FY1 A;  1HJW A;  1FAP A;  1NWS A;  3RM4 A;  3ART A;  4TW6 A;  2RUR A;  3BMB A;  4W5U A;  4MNK A;  4L72 B;  3CHF A;  2MLZ A;  4ZPT R;  1D2K A;  2KI3 A;  2DSV A;  2VCD A;  2B5U B;  3KAI A;  4DRO A;  1K9T A;  3WD1 A;  3G6M A;  1TFV A;  4QIB A;  2MNT A;  2PV3 A;  2N87 A;  3O5D A;  2L2S A;  3TCZ A;  3WD2 A;  2PBC A;  3ARR A;  2FDM A;  4IQ2 A;  1WB0 A;  2PPN A;  1Y0O A;  1X6N A;  1KT1 A;  4AY1 A;  1J4I A;  2ZQU A;  1FKI A;  2G41 A; 
#chains in the Genus database with same CATH homology
 4UDM A;  3EIP A;  2B5U B;  1E44 A;  1JCH B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EIPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations