2O5JD

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 275
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
275
sequence length
1504
structure length
1264
Chain Sequence
KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
molecule tags Transferase/dna-rna hybrid
total genus 275
structure length 1264
sequence length 1504
chains with identical sequence N
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00623 RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
D PF04983 RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3
D PF04997 RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
D PF04998 RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5
D PF05000 RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.30 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 2o5jD05
1.10.274.100 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2o5jD04
2.20.28.170 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2o5jD07
2.40.40.70 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2o5jD03
3H0GA 1ZYRD 2JA6A 1IW7D 1I3QA 3GTMA 1TWAA 2PMZA 2JA7A 4QIWA 1K83A 2R93A 3HKZA 3GTLA 1TWGA 2NVXA 1I50A 2VUMA 2Y0SA 2A6ED 2R92A 4AYBA 2O5JD 3GTOA 2NVYA 3GTGA 1I6VD 2WAQA 1Y1WA 2E2IA 3GTPA 1HQMD 2E2HA 1YNND 2WB1A 1TWHA 2JA5A 1TWFA 2A69D 3GTQA 2B63A 2YU9A 1Y1VA 3GTKA 2R7ZA 1YNJD 1SMYD 1WCMA 1TWCA 2A68D 3CQZA 1SFOA 1R9TA 2A6HD 3GTJA 2CW0D 2BE5D 4C2MA 3FKIA
chains in the Genus database with same CATH superfamily
2VPXA 3X2JA 3NFPI 2JA7A 5JSBB 1IROA 2HVYC 1SMWA 3LR2A 1VZHA 5M3ML 4BY7L 3P2AA 4X6AL 1K4TA 3HOZL 1QCSA 1R27A 1Y4ZA 5JVH1 3VPBE 2XJPA 1S30A 1SIWA 4A3FL 4JAEA 2JA5A 2NAPA 2B5ID 3IU3I 2HROA 4JAGA 2A68D 5FTNA 1SFOA 4FXDA 3FKIL 3PKIA 4KDDA 5FTKA 2LPJA 2AYJA 1EH1A 1NNQA 4UY81 1A35A 3EZEA 3MSUA 1YK5A 5IYCL 1GE9A 2M6PA 3M4OL 3U44A 1PFYA 3H99A 3S1NL 1WLFA 3IR6A 5GM9A 1KQFA 3CF2A 1V9MA 2B63A 4AR4A 1PFUA 3PZAA 4D3ZA 2V0FA 3PWFA 3MQKB 3TIWA 1R9TA 3GTJL 2AQCA 4C2MA 2R4GA 5K2ME 1CADA 5FTMA 2JI1A 3QC8A 4C3HL 2XJQA 4ZN1B 1T6JA 1OA9A 4AYBA 3GTOL 3S16L 3RZOL 1T9QA 3DU6A 3I4NL 1NXGA 4A3JL 4AVRA 1CR5A 2N1DB 1WQGA 5GAEc 3HU3A 2FIOA 3PO3L 1Y1VL 4AONB 1YNJD 1TWCL 5DYIA 2PMZP 1LKMA 4QIWP 2ENGA 4KDLA 3X2HA 4ME3A 4TVMA 1H0HA 1I6HL 3HOUL 4NOKA 1SC7A 1DX8A 3ZG6A 4Q5VA 4GA6A 3GTMA 2WAQP 5M5YL 4LHLA 4XXBB 5IYDL 1L8FA 4CRYG 1ODHA 1I50L 2NVXA 3B0AB 2Z3RB 3LHPS 1BQ9A 5FTLA 2K3NA 2DMRA 4BBRL 2NVYA 2X0OA 1Y1WA 2E2IA 1S24A 2E2HL 1IRNA 3S1ML 2V3BB 2X0QA 2PPTA 4D3YA 2C6AA 2R7ZL 3DMRA 1F4LA 2KQAA 4JADA 1YUXA 2PI8A 3IR7A 1K83L 3M3GA 3WVOA 2PVEA 3LF9A 2VL6A 1PZXA 2JA6L 4FERA 2PYAA 2E2JL 4AHZA 1KQGA 1LTLA 4A3GL 4AI2A 4B8CD 2Y0SA 2A6ED 2R92A 1UHDA 3NZ4A 4YWMA 5GLXA 3K5NA 1RR8C 3HJWB 1PT1A 4V196 1YUZA 2MX8A 2ZIXA 3K7AL 5GLFA 1VZGA 4GS7D 1TWFL 1DMRA 1BQ8A 5C4JL 1SMUA 3GTKL 1Y5IA 1S3SA 1WCMA 3CQZA 1FHMA 1YK4A 4A3KL 3J7Z1 2PICA 3HKZP 2ERSA 1PYQA 1ZYMA 1ZC1A 4JP6A 1ISEA 2HWGA 3S17L 2AE0X 4A3EL 3RZ6A 4AI3A 3K35A 1TWAL 4A3LL 4KLNA 2Y0NA 4LHNA 4AHCA 4C5RA 4JJOA 2AQLA 2K3QA 4NOHA 2PJHB 3OUGA 1RB9A 4F3EA 5B6CA 2MX9A 1Y698 1NH3A 1T9PA 2V0EA 4KDIA 3QVDA 4BXXL 4FG4A 4KB2A 1DVBA 4ZN3B 2WB1A 1LPQA 2VPWA 4AZDA 4OYDB 3S1QL 2Z3QB 4Y7NL 4KODA 2LCQA 1EJ9A 3HJYB 4C2M1 1LKOA 3GTQL 1G8KA 1IU5A 2CW0D 2GAEA 4CEIA 3KYUA 1S2ZA 5EIOC 1H7VA 1E18A 2C45A 3H0GA 4KAWX 4AHWA 4GA5A 3U4QA 1PQHA 2R93L 4D7ZB 1TWGA 2VUMA 1OWBA 2LTHA 1E8JA 4CS0A 3SUMA 1PFWA 1R0FA 3X2LA 4QCLA 3KYXA 3HAXC 1T6PA 7RXNA 3HOWL 2IV2X 3KYLA 2PVXA 4L48A 2RDVA 4IP9A 1A31A 1E5VA 4ENGA 4FBSA 3RYGA 4NOMA 4A3ML 1WJVA 5T5MD 2J9UB 2QL0A 2G6GA 3P9AA 1FDIA 2M4YA 2Y0SP 3M3YL 1RWDA 3LRDA 2L0ZA 1IS1A 1YV1A 3MPSA 2JA7L 3LR6A 2H12A 1WQHA 3H9BA 3H9CA 4A93L 5AI2A 3S14L 4AR3A 5EINC 4BY1L 1OWCA 5JSNB 2JA5L 1RRJA 4Q5GA 2KI8A 1VC3B 2XJSA 1YLEA 4TPUA 1SFOL 2JIMA 5MF6A 2CR8A 4AHXA 1T9OA 5RXNA 5C18A 1VCXA 3M4AA 1R0GA 1FHHA 3H0GL 2DSXA 1TWGL 5FTJA 4AN8A 2EZAA 5C44L 4AI0A 1FDOA 4C3IL 2PJJA 3IR5A 1QCVA 2NYDA 4FYDA 1JYBA 3WWLA 1TWHA 2B63L 2M6OA 5M3FL 3S2HL 2JIPA 2VPZA 5DYGA 3FDJA 4A3IL 3LPEB 4AI1A 1R9TL 2A6HD 2BE5D 3GTPA 3P8BA 1PYUB 5GAGc 1B71A 3HOVL 3PIO1 3PO2L 4A3CL 1AA6A 4CQ5A 4AOKB 1H5NA 3GTLA 2FIPA 3RZTA 3LR8A 3EZBA 2O5JD 6RXNA 4KO8A 2RFKB 3PL5A 4KB4A 4U671 5FLML 1HQMD 4NOLA 2B9SB 4C5SA 1QYBA 2MQAA 1P7PA 2AUSB 3J7Y1 4JS7A 3HU2A 1E61A 1IU6A 3X2MA 3KYWA 3SULA 3FKIA 5T5ID 5IZ2A 5JVG1 5AN9H 4C5UA 4AYBP 1OA7A 2EZCA 3GTML 1I3QA 3SJRA 2K2DA 4IP8A 4FGUA 2NVXL 1R0IA 3O5AA 1B2OA 2ERJA 1EZAA 2NVYL 3DU5A 1QDNA 1I6VD 1Y1WL 5MLC9 2E2IL 2JIRA 3X2NA 2EEOB 4L8IA 4V2RA 4CEJA 2YUJA 1VZIA 1TMOA 3KYYA 3ML1A 5GADc 1MIUA 4RXNA 3ENGA 2LPIA 4E6YA 3GTJA 4C3JL 1QQTA 2EY4E 1AW8B 2JI2A 5MGNA 3SUKA 2CKAA 1R49A 4AHYA 3GTLL 2PMZA 2APOB 4QIWA 4ZM7A 2V45A 4POFA 2JIOA 5IY0A 3K5LA 1DMSA 4V2QA 4A3DL 2R92L 3GTOA 5EPPA 4H3TA 2WAQA 5MFZA 3SS2A 2HCZX 3QQ8A 3X2KA 2KN9A 3MAQA 2YU9A 3B08B 2NVTL 1Y1VA 3LWPB 4Y52L 1WCML 2C6BA 3CQZL 4AR5A 1TWCA 1B2JA 5H4UA 3IAYA 1EZBA 4BBSL 2G5DA 8RXNA 3QQCE 3RZDL 1I3QL 1E60A 1TGOA 1R0HA 4G6BA 4BABA 3K58A 2PNWA 5C4XL 2MP0A 2XJTA 1I50A 1W27A 1RYTA 5DM71 2JI3A 3SUJA 2YIIA 2E2HA 1Y2MA 2M4VA 5M5XL 4C6GA 4EJ3A 4JAFA 4WFN1 3PIP1 5DM61 1R7RA 2R7ZA 1PQEA 3X2IA 4JCWA 5IYBL 2XJRA 2LYIA 3QQ7A 4KC6A 3PKJA 4BAAA 1RDVA 4O26A 1K83A 1BRFA 2V3VA 5FJ8L 2JA6A 1CZ4A 1BW4A 3H3VM 3LWRB 3K5MA 3JR7A 3HKZA 2VK9A 3WWNB 2VUML 4AAYA 2WB1P 2JIQA 1T8IA 3GTGA 1R0JA 3S15L 3D30A 1YNND 1RYQA 1SEUA 2VPYA 1DD5A 2YU9L 1BW3A 5C9HA 1TWFA 2A69D 3LWVB 3GTKA 1PQFA 3HOXL 3TM7B 4CEHA 3KYVA 1SMYD 5CQGA 3HU1A 1Z92B 2XJVA 1SMMA 3PLXB 2NVQL 3LNLA 2NYAA 1K4SA 5H1Sc 1ZYRD 1RDGA 4AR6A 1TWAA 4JLRC 5MLC3 4XGHA 1PT0A 1OGYA 2E7ZA 1NXEA 1TL8A 4FFTA 3S2DL 2K3OA 2HR5A 2F5JA 2GMGA 4JP7A 3A44A 5GLYA 1C09A 4YWLA 1Q16A 5GAHc 3K57A 5MFPA 1WC2A 5IP9L 4K9FA 5AI3A 3CZBA 3HOYL 3LWOB 2PSMC 1G8JA 1N10A 1PPYA 3EZAA 2F4QA 2XJUA 3H97A 3GTQA 1BE7A 4DMRA 2MS3A 2JA8L 3S1RL 1HD5A 3X2GA 4LMOA 1PFVA 1IW7D 1EK8A 1Q8IA 1BFYA 1E32A 1A36A 3K5OA 2R93A 5IP7L 4FG2A 2N3EA 3X2OA 4A3BL 2BH0A 3GTGL 5C1BA 1R5ZA 1CAAA 1ZRPA 1B13A 1LKPA 3I4ML 3K59A 5M5WL 4RV0A 2X0PA 1TWHL 5C3EL 4GFQA 3LWQB 2KKDA 3QWZA 1CZ5A 4POGA 1EU1A 4CRZA 1UHEA 1WQFA 2LKMB 2EZBA 3GTPL 3X2PA 2CKCA
chains in the Genus database with same CATH topology
2VPXA 3NFPI 2JA7A 5JSBB 1IROA 1SMWA 3LR2A 1VZHA 3P2AA 1K4TA 1QCSA 1R27A 1Y4ZA 5JVH1 3VPBE 2XJPA 1S30A 1SIWA 4JAEA 2JA5A 2NAPA 2B5ID 3IU3I 4JAGA 2A68D 5FTNA 1SFOA 4FXDA 3PKIA 4KDDA 5FTKA 2LPJA 2AYJA 1EH1A 1NNQA 4UY81 1A35A 3MSUA 1YK5A 1GE9A 2M6PA 3U44A 1WLFA 3IR6A 1KQFA 3CF2A 1V9MA 2B63A 4AR4A 3PZAA 4D3ZA 2V0FA 3PWFA 3TIWA 1R9TA 4C2MA 2R4GA 5K2ME 1CADA 5FTMA 2JI1A 3QC8A 2XJQA 4ZN1B 4AYBA 1T9QA 3DU6A 1NXGA 1CR5A 2N1DB 1WQGA 5GAEc 3HU3A 2FIOA 4AONB 1YNJD 5DYIA 1LKMA 4KDLA 4ME3A 4TVMA 1H0HA 4NOKA 1SC7A 1DX8A 3ZG6A 4Q5VA 4GA6A 3GTMA 4LHLA 4XXBB 4CRYG 1ODHA 2NVXA 3B0AB 2Z3RB 3LHPS 1BQ9A 5FTLA 2K3NA 2DMRA 2NVYA 2X0OA 1Y1WA 2E2IA 1S24A 1IRNA 2V3BB 2X0QA 2PPTA 4D3YA 2C6AA 3DMRA 4JADA 1YUXA 2PI8A 3IR7A 3WVOA 2PVEA 3LF9A 2VL6A 2PYAA 4AHZA 1KQGA 1LTLA 4AI2A 4B8CD 2Y0SA 2A6ED 2R92A 1UHDA 4YWMA 3K5NA 1RR8C 1PT1A 4V196 1YUZA 2MX8A 2ZIXA 5GLFA 1VZGA 4GS7D 1DMRA 1BQ8A 1SMUA 1Y5IA 1S3SA 1WCMA 3CQZA 1FHMA 1YK4A 3J7Z1 2PICA 1PYQA 2ERSA 1ZC1A 1ISEA 2AE0X 3RZ6A 4AI3A 3K35A 4KLNA 2Y0NA 4LHNA 4AHCA 2AQLA 2K3QA 4NOHA 2PJHB 3OUGA 1RB9A 4F3EA 5B6CA 2MX9A 1Y698 1NH3A 1T9PA 2V0EA 4KDIA 3QVDA 4KB2A 1DVBA 4ZN3B 2WB1A 1LPQA 2VPWA 4AZDA 4OYDB 2Z3QB 4KODA 2LCQA 1EJ9A 1LKOA 1G8KA 1IU5A 2CW0D 2GAEA 4CEIA 3KYUA 1S2ZA 5EIOC 1H7VA 1E18A 2C45A 3H0GA 4KAWX 4AHWA 4GA5A 3U4QA 1PQHA 4D7ZB 1TWGA 2VUMA 1OWBA 2LTHA 1E8JA 4CS0A 1R0FA 4QCLA 3KYXA 7RXNA 2IV2X 3KYLA 2PVXA 2RDVA 4IP9A 1A31A 1E5VA 4FBSA 3RYGA 4NOMA 1WJVA 5T5MD 2J9UB 2QL0A 2G6GA 3P9AA 1FDIA 2M4YA 1RWDA 3LRDA 2L0ZA 1IS1A 1YV1A 3MPSA 3LR6A 2H12A 1WQHA 5AI2A 4AR3A 5EINC 1OWCA 5JSNB 1RRJA 4Q5GA 2KI8A 1VC3B 2XJSA 1YLEA 4TPUA 2JIMA 5MF6A 2CR8A 4AHXA 1T9OA 5RXNA 5C18A 1VCXA 3M4AA 1R0GA 1FHHA 2DSXA 5FTJA 4AN8A 4AI0A 1FDOA 2PJJA 3IR5A 1QCVA 2NYDA 4FYDA 1JYBA 3WWLA 1TWHA 2M6OA 2JIPA 2VPZA 5DYGA 3LPEB 4AI1A 2A6HD 2BE5D 3GTPA 3P8BA 1PYUB 5GAGc 1B71A 3PIO1 1AA6A 4AOKB 1H5NA 3GTLA 2FIPA 3RZTA 3LR8A 2O5JD 6RXNA 4KO8A 4KB4A 4U671 1HQMD 4NOLA 2B9SB 1QYBA 2MQAA 3J7Y1 3HU2A 1E61A 1IU6A 3KYWA 3FKIA 5T5ID 5IZ2A 5JVG1 5AN9H 1I3QA 3SJRA 2K2DA 4IP8A 4FGUA 1R0IA 3O5AA 1B2OA 2ERJA 3DU5A 1QDNA 1I6VD 5MLC9 2JIRA 2EEOB 4L8IA 4CEJA 2YUJA 1VZIA 1TMOA 3KYYA 3ML1A 5GADc 1MIUA 4RXNA 2LPIA 4E6YA 3GTJA 1AW8B 2JI2A 5MGNA 2CKAA 1R49A 4AHYA 2PMZA 4QIWA 2V45A 4POFA 2JIOA 5IY0A 3K5LA 1DMSA 3GTOA 5EPPA 4H3TA 2WAQA 5MFZA 3SS2A 3QQ8A 2KN9A 3MAQA 2YU9A 3B08B 1Y1VA 4AR5A 2C6BA 1TWCA 1B2JA 3IAYA 2G5DA 8RXNA 3QQCE 1E60A 1TGOA 1R0HA 4G6BA 3K58A 2PNWA 2XJTA 1I50A 1RYTA 5DM71 2JI3A 2E2HA 2M4VA 4EJ3A 4JAFA 4WFN1 3PIP1 5DM61 1R7RA 2R7ZA 1PQEA 2XJRA 2LYIA 3QQ7A 4KC6A 3PKJA 1RDVA 4O26A 1K83A 1BRFA 2V3VA 2JA6A 1CZ4A 3K5MA 3HKZA 2VK9A 3WWNB 4AAYA 2JIQA 1T8IA 3GTGA 1R0JA 1YNND 1RYQA 1SEUA 2VPYA 1DD5A 5C9HA 1TWFA 2A69D 3GTKA 1PQFA 3TM7B 4CEHA 3KYVA 1SMYD 5CQGA 3HU1A 1Z92B 2XJVA 1SMMA 3PLXB 3LNLA 2NYAA 1K4SA 5H1Sc 1ZYRD 1RDGA 4AR6A 1TWAA 4JLRC 5MLC3 4XGHA 1PT0A 1OGYA 2E7ZA 1NXEA 1TL8A 2K3OA 2HR5A 2F5JA 2GMGA 3A44A 1C09A 4YWLA 1Q16A 5GAHc 3K57A 5MFPA 4K9FA 5AI3A 3CZBA 2PSMC 1G8JA 1PPYA 2XJUA 2F4QA 3GTQA 1BE7A 4DMRA 2MS3A 4LMOA 1BFYA 1IW7D 1EK8A 1Q8IA 1E32A 1A36A 3K5OA 2R93A 2N3EA 5C1BA 1R5ZA 1CAAA 1ZRPA 1B13A 1LKPA 3K59A 4RV0A 2X0PA 1CZ5A 4GFQA 2KKDA 3QWZA 4POGA 1EU1A 4CRZA 1UHEA 1WQFA 2LKMB 2CKCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H0G A;  1ZYR D;  2JA6 A;  1IW7 D;  1I3Q A;  3GTM A;  1TWA A;  2PMZ A;  2JA7 A;  4QIW A;  1K83 A;  2R93 A;  3HKZ A;  3GTL A;  1TWG A;  2NVX A;  1I50 A;  2VUM A;  2Y0S A;  2A6E D;  2R92 A;  4AYB A;  2O5J D;  3GTO A;  2NVY A;  3GTG A;  1I6V D;  2WAQ A;  1Y1W A;  2E2I A;  3GTP A;  1HQM D;  2E2H A;  1YNN D;  2WB1 A;  1TWH A;  2JA5 A;  1TWF A;  2A69 D;  3GTQ A;  2B63 A;  2YU9 A;  1Y1V A;  3GTK A;  2R7Z A;  1YNJ D;  1SMY D;  1WCM A;  1TWC A;  2A68 D;  3CQZ A;  1SFO A;  1R9T A;  2A6H D;  3GTJ A;  2CW0 D;  2BE5 D;  4C2M A;  3FKI A; 
#chains in the Genus database with same CATH topology
 2VPX A;  3X2J A;  3NFP I;  2JA7 A;  5JSB B;  1IRO A;  2HVY C;  1SMW A;  3LR2 A;  1VZH A;  5M3M L;  4BY7 L;  3P2A A;  4X6A L;  1K4T A;  3HOZ L;  1QCS A;  1R27 A;  1Y4Z A;  5JVH 1;  3VPB E;  2XJP A;  1S30 A;  1SIW A;  4A3F L;  4JAE A;  2JA5 A;  2NAP A;  2B5I D;  3IU3 I;  2HRO A;  4JAG A;  2A68 D;  5FTN A;  1SFO A;  4FXD A;  3FKI L;  3PKI A;  4KDD A;  5FTK A;  2LPJ A;  2AYJ A;  1EH1 A;  1NNQ A;  4UY8 1;  1A35 A;  3EZE A;  3MSU A;  1YK5 A;  5IYC L;  1GE9 A;  2M6P A;  3M4O L;  3U44 A;  1PFY A;  3H99 A;  3S1N L;  1WLF A;  3IR6 A;  5GM9 A;  1KQF A;  3CF2 A;  1V9M A;  2B63 A;  4AR4 A;  1PFU A;  3PZA A;  4D3Z A;  2V0F A;  3PWF A;  3MQK B;  3TIW A;  1R9T A;  3GTJ L;  2AQC A;  4C2M A;  2R4G A;  5K2M E;  1CAD A;  5FTM A;  2JI1 A;  3QC8 A;  4C3H L;  2XJQ A;  4ZN1 B;  1T6J A;  1OA9 A;  4AYB A;  3GTO L;  3S16 L;  3RZO L;  1T9Q A;  3DU6 A;  3I4N L;  1NXG A;  4A3J L;  4AVR A;  1CR5 A;  2N1D B;  1WQG A;  5GAE c;  3HU3 A;  2FIO A;  3PO3 L;  1Y1V L;  4AON B;  1YNJ D;  1TWC L;  5DYI A;  2PMZ P;  1LKM A;  4QIW P;  2ENG A;  4KDL A;  3X2H A;  4ME3 A;  4TVM A;  1H0H A;  1I6H L;  3HOU L;  4NOK A;  1SC7 A;  1DX8 A;  3ZG6 A;  4Q5V A;  4GA6 A;  3GTM A;  2WAQ P;  5M5Y L;  4LHL A;  4XXB B;  5IYD L;  1L8F A;  4CRY G;  1ODH A;  1I50 L;  2NVX A;  3B0A B;  2Z3R B;  3LHP S;  1BQ9 A;  5FTL A;  2K3N A;  2DMR A;  4BBR L;  2NVY A;  2X0O A;  1Y1W A;  2E2I A;  1S24 A;  2E2H L;  1IRN A;  3S1M L;  2V3B B;  2X0Q A;  2PPT A;  4D3Y A;  2C6A A;  2R7Z L;  3DMR A;  1F4L A;  2KQA A;  4JAD A;  1YUX A;  2PI8 A;  3IR7 A;  1K83 L;  3M3G A;  3WVO A;  2PVE A;  3LF9 A;  2VL6 A;  1PZX A;  2JA6 L;  4FER A;  2PYA A;  2E2J L;  4AHZ A;  1KQG A;  1LTL A;  4A3G L;  4AI2 A;  4B8C D;  2Y0S A;  2A6E D;  2R92 A;  1UHD A;  3NZ4 A;  4YWM A;  5GLX A;  3K5N A;  1RR8 C;  3HJW B;  1PT1 A;  4V19 6;  1YUZ A;  2MX8 A;  2ZIX A;  3K7A L;  5GLF A;  1VZG A;  4GS7 D;  1TWF L;  1DMR A;  1BQ8 A;  5C4J L;  1SMU A;  3GTK L;  1Y5I A;  1S3S A;  1WCM A;  3CQZ A;  1FHM A;  1YK4 A;  4A3K L;  3J7Z 1;  2PIC A;  3HKZ P;  2ERS A;  1PYQ A;  1ZYM A;  1ZC1 A;  4JP6 A;  1ISE A;  2HWG A;  3S17 L;  2AE0 X;  4A3E L;  3RZ6 A;  4AI3 A;  3K35 A;  1TWA L;  4A3L L;  4KLN A;  2Y0N A;  4LHN A;  4AHC A;  4C5R A;  4JJO A;  2AQL A;  2K3Q A;  4NOH A;  2PJH B;  3OUG A;  1RB9 A;  4F3E A;  5B6C A;  2MX9 A;  1Y69 8;  1NH3 A;  1T9P A;  2V0E A;  4KDI A;  3QVD A;  4BXX L;  4FG4 A;  4KB2 A;  1DVB A;  4ZN3 B;  2WB1 A;  1LPQ A;  2VPW A;  4AZD A;  4OYD B;  3S1Q L;  2Z3Q B;  4Y7N L;  4KOD A;  2LCQ A;  1EJ9 A;  3HJY B;  4C2M 1;  1LKO A;  3GTQ L;  1G8K A;  1IU5 A;  2CW0 D;  2GAE A;  4CEI A;  3KYU A;  1S2Z A;  5EIO C;  1H7V A;  1E18 A;  2C45 A;  3H0G A;  4KAW X;  4AHW A;  4GA5 A;  3U4Q A;  1PQH A;  2R93 L;  4D7Z B;  1TWG A;  2VUM A;  1OWB A;  2LTH A;  1E8J A;  4CS0 A;  3SUM A;  1PFW A;  1R0F A;  3X2L A;  4QCL A;  3KYX A;  3HAX C;  1T6P A;  7RXN A;  3HOW L;  2IV2 X;  3KYL A;  2PVX A;  4L48 A;  2RDV A;  4IP9 A;  1A31 A;  1E5V A;  4ENG A;  4FBS A;  3RYG A;  4NOM A;  4A3M L;  1WJV A;  5T5M D;  2J9U B;  2QL0 A;  2G6G A;  3P9A A;  1FDI A;  2M4Y A;  2Y0S P;  3M3Y L;  1RWD A;  3LRD A;  2L0Z A;  1IS1 A;  1YV1 A;  3MPS A;  2JA7 L;  3LR6 A;  2H12 A;  1WQH A;  3H9B A;  3H9C A;  4A93 L;  5AI2 A;  3S14 L;  4AR3 A;  5EIN C;  4BY1 L;  1OWC A;  5JSN B;  2JA5 L;  1RRJ A;  4Q5G A;  2KI8 A;  1VC3 B;  2XJS A;  1YLE A;  4TPU A;  1SFO L;  2JIM A;  5MF6 A;  2CR8 A;  4AHX A;  1T9O A;  5RXN A;  5C18 A;  1VCX A;  3M4A A;  1R0G A;  1FHH A;  3H0G L;  2DSX A;  1TWG L;  5FTJ A;  4AN8 A;  2EZA A;  5C44 L;  4AI0 A;  1FDO A;  4C3I L;  2PJJ A;  3IR5 A;  1QCV A;  2NYD A;  4FYD A;  1JYB A;  3WWL A;  1TWH A;  2B63 L;  2M6O A;  5M3F L;  3S2H L;  2JIP A;  2VPZ A;  5DYG A;  3FDJ A;  4A3I L;  3LPE B;  4AI1 A;  1R9T L;  2A6H D;  2BE5 D;  3GTP A;  3P8B A;  1PYU B;  5GAG c;  1B71 A;  3HOV L;  3PIO 1;  3PO2 L;  4A3C L;  1AA6 A;  4CQ5 A;  4AOK B;  1H5N A;  3GTL A;  2FIP A;  3RZT A;  3LR8 A;  3EZB A;  2O5J D;  6RXN A;  4KO8 A;  2RFK B;  3PL5 A;  4KB4 A;  4U67 1;  5FLM L;  1HQM D;  4NOL A;  2B9S B;  4C5S A;  1QYB A;  2MQA A;  1P7P A;  2AUS B;  3J7Y 1;  4JS7 A;  3HU2 A;  1E61 A;  1IU6 A;  3X2M A;  3KYW A;  3SUL A;  3FKI A;  5T5I D;  5IZ2 A;  5JVG 1;  5AN9 H;  4C5U A;  4AYB P;  1OA7 A;  2EZC A;  3GTM L;  1I3Q A;  3SJR A;  2K2D A;  4IP8 A;  4FGU A;  2NVX L;  1R0I A;  3O5A A;  1B2O A;  2ERJ A;  1EZA A;  2NVY L;  3DU5 A;  1QDN A;  1I6V D;  1Y1W L;  5MLC 9;  2E2I L;  2JIR A;  3X2N A;  2EEO B;  4L8I A;  4V2R A;  4CEJ A;  2YUJ A;  1VZI A;  1TMO A;  3KYY A;  3ML1 A;  5GAD c;  1MIU A;  4RXN A;  3ENG A;  2LPI A;  4E6Y A;  3GTJ A;  4C3J L;  1QQT A;  2EY4 E;  1AW8 B;  2JI2 A;  5MGN A;  3SUK A;  2CKA A;  1R49 A;  4AHY A;  3GTL L;  2PMZ A;  2APO B;  4QIW A;  4ZM7 A;  2V45 A;  4POF A;  2JIO A;  5IY0 A;  3K5L A;  1DMS A;  4V2Q A;  4A3D L;  2R92 L;  3GTO A;  5EPP A;  4H3T A;  2WAQ A;  5MFZ A;  3SS2 A;  2HCZ X;  3QQ8 A;  3X2K A;  2KN9 A;  3MAQ A;  2YU9 A;  3B08 B;  2NVT L;  1Y1V A;  3LWP B;  4Y52 L;  1WCM L;  2C6B A;  3CQZ L;  4AR5 A;  1TWC A;  1B2J A;  5H4U A;  3IAY A;  1EZB A;  4BBS L;  2G5D A;  8RXN A;  3QQC E;  3RZD L;  1I3Q L;  1E60 A;  1TGO A;  1R0H A;  4G6B A;  4BAB A;  3K58 A;  2PNW A;  5C4X L;  2MP0 A;  2XJT A;  1I50 A;  1W27 A;  1RYT A;  5DM7 1;  2JI3 A;  3SUJ A;  2YII A;  2E2H A;  1Y2M A;  2M4V A;  5M5X L;  4C6G A;  4EJ3 A;  4JAF A;  4WFN 1;  3PIP 1;  5DM6 1;  1R7R A;  2R7Z A;  1PQE A;  3X2I A;  4JCW A;  5IYB L;  2XJR A;  2LYI A;  3QQ7 A;  4KC6 A;  3PKJ A;  4BAA A;  1RDV A;  4O26 A;  1K83 A;  1BRF A;  2V3V A;  5FJ8 L;  2JA6 A;  1CZ4 A;  1BW4 A;  3H3V M;  3LWR B;  3K5M A;  3JR7 A;  3HKZ A;  2VK9 A;  3WWN B;  2VUM L;  4AAY A;  2WB1 P;  2JIQ A;  1T8I A;  3GTG A;  1R0J A;  3S15 L;  3D30 A;  1YNN D;  1RYQ A;  1SEU A;  2VPY A;  1DD5 A;  2YU9 L;  1BW3 A;  5C9H A;  1TWF A;  2A69 D;  3LWV B;  3GTK A;  1PQF A;  3HOX L;  3TM7 B;  4CEH A;  3KYV A;  1SMY D;  5CQG A;  3HU1 A;  1Z92 B;  2XJV A;  1SMM A;  3PLX B;  2NVQ L;  3LNL A;  2NYA A;  1K4S A;  5H1S c;  1ZYR D;  1RDG A;  4AR6 A;  1TWA A;  4JLR C;  5MLC 3;  4XGH A;  1PT0 A;  1OGY A;  2E7Z A;  1NXE A;  1TL8 A;  4FFT A;  3S2D L;  2K3O A;  2HR5 A;  2F5J A;  2GMG A;  4JP7 A;  3A44 A;  5GLY A;  1C09 A;  4YWL A;  1Q16 A;  5GAH c;  3K57 A;  5MFP A;  1WC2 A;  5IP9 L;  4K9F A;  5AI3 A;  3CZB A;  3HOY L;  3LWO B;  2PSM C;  1G8J A;  1N10 A;  1PPY A;  3EZA A;  2F4Q A;  2XJU A;  3H97 A;  3GTQ A;  1BE7 A;  4DMR A;  2MS3 A;  2JA8 L;  3S1R L;  1HD5 A;  3X2G A;  4LMO A;  1PFV A;  1IW7 D;  1EK8 A;  1Q8I A;  1BFY A;  1E32 A;  1A36 A;  3K5O A;  2R93 A;  5IP7 L;  4FG2 A;  2N3E A;  3X2O A;  4A3B L;  2BH0 A;  3GTG L;  5C1B A;  1R5Z A;  1CAA A;  1ZRP A;  1B13 A;  1LKP A;  3I4M L;  3K59 A;  5M5W L;  4RV0 A;  2X0P A;  1TWH L;  5C3E L;  4GFQ A;  3LWQ B;  2KKD A;  3QWZ A;  1CZ5 A;  4POG A;  1EU1 A;  4CRZ A;  1UHE A;  1WQF A;  2LKM B;  2EZB A;  3GTP L;  3X2P A;  2CKC A; 
#chains in the Genus database with same CATH homology
 2VPX A;  3NFP I;  2JA7 A;  5JSB B;  1IRO A;  1SMW A;  3LR2 A;  1VZH A;  3P2A A;  1K4T A;  1QCS A;  1R27 A;  1Y4Z A;  5JVH 1;  3VPB E;  2XJP A;  1S30 A;  1SIW A;  4JAE A;  2JA5 A;  2NAP A;  2B5I D;  3IU3 I;  4JAG A;  2A68 D;  5FTN A;  1SFO A;  4FXD A;  3PKI A;  4KDD A;  5FTK A;  2LPJ A;  2AYJ A;  1EH1 A;  1NNQ A;  4UY8 1;  1A35 A;  3MSU A;  1YK5 A;  1GE9 A;  2M6P A;  3U44 A;  1WLF A;  3IR6 A;  1KQF A;  3CF2 A;  1V9M A;  2B63 A;  4AR4 A;  3PZA A;  4D3Z A;  2V0F A;  3PWF A;  3TIW A;  1R9T A;  4C2M A;  2R4G A;  5K2M E;  1CAD A;  5FTM A;  2JI1 A;  3QC8 A;  2XJQ A;  4ZN1 B;  4AYB A;  1T9Q A;  3DU6 A;  1NXG A;  1CR5 A;  2N1D B;  1WQG A;  5GAE c;  3HU3 A;  2FIO A;  4AON B;  1YNJ D;  5DYI A;  1LKM A;  4KDL A;  4ME3 A;  4TVM A;  1H0H A;  4NOK A;  1SC7 A;  1DX8 A;  3ZG6 A;  4Q5V A;  4GA6 A;  3GTM A;  4LHL A;  4XXB B;  4CRY G;  1ODH A;  2NVX A;  3B0A B;  2Z3R B;  3LHP S;  1BQ9 A;  5FTL A;  2K3N A;  2DMR A;  2NVY A;  2X0O A;  1Y1W A;  2E2I A;  1S24 A;  1IRN A;  2V3B B;  2X0Q A;  2PPT A;  4D3Y A;  2C6A A;  3DMR A;  4JAD A;  1YUX A;  2PI8 A;  3IR7 A;  3WVO A;  2PVE A;  3LF9 A;  2VL6 A;  2PYA A;  4AHZ A;  1KQG A;  1LTL A;  4AI2 A;  4B8C D;  2Y0S A;  2A6E D;  2R92 A;  1UHD A;  4YWM A;  3K5N A;  1RR8 C;  1PT1 A;  4V19 6;  1YUZ A;  2MX8 A;  2ZIX A;  5GLF A;  1VZG A;  4GS7 D;  1DMR A;  1BQ8 A;  1SMU A;  1Y5I A;  1S3S A;  1WCM A;  3CQZ A;  1FHM A;  1YK4 A;  3J7Z 1;  2PIC A;  1PYQ A;  2ERS A;  1ZC1 A;  1ISE A;  2AE0 X;  3RZ6 A;  4AI3 A;  3K35 A;  4KLN A;  2Y0N A;  4LHN A;  4AHC A;  2AQL A;  2K3Q A;  4NOH A;  2PJH B;  3OUG A;  1RB9 A;  4F3E A;  5B6C A;  2MX9 A;  1Y69 8;  1NH3 A;  1T9P A;  2V0E A;  4KDI A;  3QVD A;  4KB2 A;  1DVB A;  4ZN3 B;  2WB1 A;  1LPQ A;  2VPW A;  4AZD A;  4OYD B;  2Z3Q B;  4KOD A;  2LCQ A;  1EJ9 A;  1LKO A;  1G8K A;  1IU5 A;  2CW0 D;  2GAE A;  4CEI A;  3KYU A;  1S2Z A;  5EIO C;  1H7V A;  1E18 A;  2C45 A;  3H0G A;  4KAW X;  4AHW A;  4GA5 A;  3U4Q A;  1PQH A;  4D7Z B;  1TWG A;  2VUM A;  1OWB A;  2LTH A;  1E8J A;  4CS0 A;  1R0F A;  4QCL A;  3KYX A;  7RXN A;  2IV2 X;  3KYL A;  2PVX A;  2RDV A;  4IP9 A;  1A31 A;  1E5V A;  4FBS A;  3RYG A;  4NOM A;  1WJV A;  5T5M D;  2J9U B;  2QL0 A;  2G6G A;  3P9A A;  1FDI A;  2M4Y A;  1RWD A;  3LRD A;  2L0Z A;  1IS1 A;  1YV1 A;  3MPS A;  3LR6 A;  2H12 A;  1WQH A;  5AI2 A;  4AR3 A;  5EIN C;  1OWC A;  5JSN B;  1RRJ A;  4Q5G A;  2KI8 A;  1VC3 B;  2XJS A;  1YLE A;  4TPU A;  2JIM A;  5MF6 A;  2CR8 A;  4AHX A;  1T9O A;  5RXN A;  5C18 A;  1VCX A;  3M4A A;  1R0G A;  1FHH A;  2DSX A;  5FTJ A;  4AN8 A;  4AI0 A;  1FDO A;  2PJJ A;  3IR5 A;  1QCV A;  2NYD A;  4FYD A;  1JYB A;  3WWL A;  1TWH A;  2M6O A;  2JIP A;  2VPZ A;  5DYG A;  3LPE B;  4AI1 A;  2A6H D;  2BE5 D;  3GTP A;  3P8B A;  1PYU B;  5GAG c;  1B71 A;  3PIO 1;  1AA6 A;  4AOK B;  1H5N A;  3GTL A;  2FIP A;  3RZT A;  3LR8 A;  2O5J D;  6RXN A;  4KO8 A;  4KB4 A;  4U67 1;  1HQM D;  4NOL A;  2B9S B;  1QYB A;  2MQA A;  3J7Y 1;  3HU2 A;  1E61 A;  1IU6 A;  3KYW A;  3FKI A;  5T5I D;  5IZ2 A;  5JVG 1;  5AN9 H;  1I3Q A;  3SJR A;  2K2D A;  4IP8 A;  4FGU A;  1R0I A;  3O5A A;  1B2O A;  2ERJ A;  3DU5 A;  1QDN A;  1I6V D;  5MLC 9;  2JIR A;  2EEO B;  4L8I A;  4CEJ A;  2YUJ A;  1VZI A;  1TMO A;  3KYY A;  3ML1 A;  5GAD c;  1MIU A;  4RXN A;  2LPI A;  4E6Y A;  3GTJ A;  1AW8 B;  2JI2 A;  5MGN A;  2CKA A;  1R49 A;  4AHY A;  2PMZ A;  4QIW A;  2V45 A;  4POF A;  2JIO A;  5IY0 A;  3K5L A;  1DMS A;  3GTO A;  5EPP A;  4H3T A;  2WAQ A;  5MFZ A;  3SS2 A;  3QQ8 A;  2KN9 A;  3MAQ A;  2YU9 A;  3B08 B;  1Y1V A;  4AR5 A;  2C6B A;  1TWC A;  1B2J A;  3IAY A;  2G5D A;  8RXN A;  3QQC E;  1E60 A;  1TGO A;  1R0H A;  4G6B A;  3K58 A;  2PNW A;  2XJT A;  1I50 A;  1RYT A;  5DM7 1;  2JI3 A;  2E2H A;  2M4V A;  4EJ3 A;  4JAF A;  4WFN 1;  3PIP 1;  5DM6 1;  1R7R A;  2R7Z A;  1PQE A;  2XJR A;  2LYI A;  3QQ7 A;  4KC6 A;  3PKJ A;  1RDV A;  4O26 A;  1K83 A;  1BRF A;  2V3V A;  2JA6 A;  1CZ4 A;  3K5M A;  3HKZ A;  2VK9 A;  3WWN B;  4AAY A;  2JIQ A;  1T8I A;  3GTG A;  1R0J A;  1YNN D;  1RYQ A;  1SEU A;  2VPY A;  1DD5 A;  5C9H A;  1TWF A;  2A69 D;  3GTK A;  1PQF A;  3TM7 B;  4CEH A;  3KYV A;  1SMY D;  5CQG A;  3HU1 A;  1Z92 B;  2XJV A;  1SMM A;  3PLX B;  3LNL A;  2NYA A;  1K4S A;  5H1S c;  1ZYR D;  1RDG A;  4AR6 A;  1TWA A;  4JLR C;  5MLC 3;  4XGH A;  1PT0 A;  1OGY A;  2E7Z A;  1NXE A;  1TL8 A;  2K3O A;  2HR5 A;  2F5J A;  2GMG A;  3A44 A;  1C09 A;  4YWL A;  1Q16 A;  5GAH c;  3K57 A;  5MFP A;  4K9F A;  5AI3 A;  3CZB A;  2PSM C;  1G8J A;  1PPY A;  2XJU A;  2F4Q A;  3GTQ A;  1BE7 A;  4DMR A;  2MS3 A;  4LMO A;  1BFY A;  1IW7 D;  1EK8 A;  1Q8I A;  1E32 A;  1A36 A;  3K5O A;  2R93 A;  2N3E A;  5C1B A;  1R5Z A;  1CAA A;  1ZRP A;  1B13 A;  1LKP A;  3K59 A;  4RV0 A;  2X0P A;  1CZ5 A;  4GFQ A;  2KKD A;  3QWZ A;  4POG A;  1EU1 A;  4CRZ A;  1UHE A;  1WQF A;  2LKM B;  2CKC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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