2O5JD

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 275
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
275
sequence length
1504
structure length
1264
Chain Sequence
KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
molecule tags Transferase/dna-rna hybrid
total genus 275
structure length 1264
sequence length 1504
chains with identical sequence N
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00623 RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
D PF04983 RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3
D PF04997 RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
D PF04998 RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5
D PF05000 RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.30 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 2o5jD05
1.10.274.100 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2o5jD04
2.20.28.170 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2o5jD07
2.40.40.70 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2o5jD03
2NVXA 2VUMA 3HKZA 3H0GA 1Y1VA 2A6ED 4QIWA 2A6HD 3GTKA 4AYBA 2E2IA 2WAQA 4C2MA 1YNJD 1YNND 2BE5D 1R9TA 3GTJA 2YU9A 3GTMA 3FKIA 1TWGA 1WCMA 3CQZA 1TWHA 1K83A 3GTLA 2R93A 2A68D 2WB1A 3GTQA 1HQMD 3GTPA 1I50A 1I6VD 2A69D 2O5JD 1TWFA 1ZYRD 2PMZA 2Y0SA 2NVYA 2E2HA 1TWAA 1I3QA 2CW0D 3GTGA 2R92A 2R7ZA 2JA6A 1SFOA 2JA7A 1SMYD 3GTOA 1Y1WA 2B63A 1TWCA 1IW7D 2JA5A
chains in the Genus database with same CATH superfamily
3KYYA 5GAEc 5M5YL 1DX8A 3SUKA 4CQ5A 4JADA 4GFQA 2N1DB 2NVXL 2BE5D 3X2IA 1PT0A 3S1RL 3MQKB 1SMWA 2E2IL 1R9TL 2R93A 1E60A 4KO8A 4C5RA 5B6CA 3FDJA 2MQAA 2VPYA 3O5AA 1K4TA 4ZN1B 4ENGA 2APOB 1TWFA 1WC2A 4A3LL 1OWBA 4U671 1T8IA 5AN9H 2R92A 4AHXA 1SFOA 2QL0A 5DYGA 5GM9A 1OWCA 3EZEA 1E61A 1PPYA 3DU6A 4JCWA 1RWDA 5M5WL 3X2MA 4O26A 2MX8A 4C3JL 4JS7A 1YNND 2EZBA 5MLC9 1PFYA 3X2NA 2K3QA 4A3JL 1SC7A 3HJWB 3H3VM 3H99A 5H1Sc 2XJQA 5C9HA 2N3EA 2FIPA 3GTLL 3GTPL 1BW4A 1ZYRD 2PMZA 4D3ZA 3K57A 4C3IL 1Y5IA 3SULA 2XJTA 3H9CA 4V196 1QQTA 4A3ML 3IAYA 2F5JA 1T9PA 4A3DL 2GAEA 4C5SA 2Y0NA 2B5ID 5GADc 1IW7D 3HOYL 3DU5A 4CRYG 3HOVL 1NNQA 1Q8IA 4FFTA 4Q5VA 2NVQL 1CADA 3K5MA 1WLFA 1S24A 1ODHA 5M3ML 1H5NA 1QCSA 1I50A 3S2HL 1F4LA 2IV2X 2X0PA 2M6OA 1P7PA 2PNWA 4A3FL 1Q16A 4AHYA 5C44L 4L8IA 1CZ5A 2NYDA 1RYQA 4A3BL 3IU3I 3WWNB 1DMRA 3S16L 1TGOA 1PFWA 4XXBB 4AI0A 3GTOA 1Y1WA 1TWCA 2VL6A 2PYAA 4AOKB 1IU6A 4BAAA 4BBSL 2HCZX 5FTKA 4YWMA 1R0IA 2E7ZA 1ZC1A 3EZAA 2YU9A 1DMSA 3H0GL 2FIOA 1Y1VL 4JP6A 2M6PA 3CQZA 1K83A 2JIOA 4C5UA 4A3EL 3FKIL 2GMGA 2JIPA 2C6AA 2XJRA 3IR6A 1RYTA 2RFKB 4IP8A 3PKJA 3K35A 2E2JL 3P9AA 2JA7A 2MS3A 2JA6L 1TWAL 1ZRPA 5GLFA 4KB2A 3H9BA 3KYUA 4AAYA 2A6HD 4Y7NL 3QVDA 4F3EA 5C18A 2G6GA 4V2QA 1BQ8A 1KQGA 2JIQA 1TWGA 1YK4A 1LPQA 1DD5A 5IZ2A 1AA6A 4WFN1 1UHDA 5DM71 5IYDL 2M4VA 1RRJA 5DM61 1I3QA 2CW0D 1NXGA 1R27A 4AI3A 4NOKA 2B63A 3TIWA 2JA5A 2MP0A 2H12A 3SUMA 1K4SA 3GTKA 1E32A 1OGYA 3PKIA 2WAQA 2NVYL 2PSMC 4AI1A 2JA8L 8RXNA 3U4QA 3S2DL 1QYBA 1CAAA 1WCMA 1TWHA 3RZDL 1R5ZA 5FTMA 4AHWA 4ME3A 2R93L 3ZG6A 2ERJA 3PIP1 3X2LA 1FDOA 1LKPA 3DMRA 1BE7A 1PYQA 2EY4E 2PICA 4V2RA 4CEJA 3CF2A 1EJ9A 1C09A 1T6PA 5JVG1 3S1ML 1SMYD 3KYLA 5JVH1 3PWFA 5MFZA 2E2HL 3GTGL 1WQGA 2KQAA 2NVXA 3S14L 3HKZP 1WJVA 3WVOA 3NFPI 4ZM7A 4POGA 3QQ8A 4A3IL 5EPPA 2E2IA 3X2KA 3KYWA 1EH1A 2VUML 3GTMA 1G8KA 2JI3A 4JAEA 3X2OA 5FJ8L 2A68D 3JR7A 1Y2MA 4A93L 2A69D 2AUSB 5IYBL 5C3EL 3X2HA 1OA9A 4LMOA 1WQHA 2HWGA 2Y0SP 2LPIA 1EZAA 1IS1A 1SMMA 4FBSA 5DYIA 1TMOA 4Y52L 2L0ZA 2A6ED 5JSBB 3PO3L 4BY1L 2DMRA 5C1BA 1Z92B 4L48A 3QWZA 5T5MD 2AE0X 3GTLA 4FG2A 2AQCA 2NAPA 3M4AA 3QC8A 5C4JL 4IP9A 2V0EA 3J7Y1 3PO2L 4AONB 3RYGA 1VZGA 3A44A 1YK5A 4EJ3A 2VK9A 1H0HA 5AI2A 3SUJA 1EU1A 2JIMA 3EZBA 4E6YA 2NYAA 2CR8A 2V45A 3SJRA 2V3BB 4AN8A 1NXEA 2C45A 2AYJA 1PQFA 1B2JA 3LHPS 1YV1A 1RR8C 1BRFA 4KODA 4LHLA 4GA5A 1TL8A 1Y698 1G8JA 1L8FA 5M5XL 2YU9L 1I6HL 5EINC 1FHHA 1T9OA 1WQFA 1PYUB 3CQZL 1AW8B 2XJUA 3X2GA 3LWPB 2K3NA 2KI8A 3PL5A 2Y0SA 3LNLA 3HOXL 4BBRL 1VZIA 5K2ME 5GLXA 3IR5A 3S15L 2X0QA 5IP9L 3RZTA 3B08B 1PFVA 2PPTA 2XJSA 1LKMA 2PVEA 3RZOL 2ENGA 4KAWX 2R7ZL 2JA7L 4A3GL 2LYIA 3H0GA 1Y1VA 4BABA 2J9UB 4CEHA 3LWVB 4C2MA 4QCLA 1PT1A 2X0OA 3HU2A 3U44A 4KLNA 2R4GA 2EZAA 3VPBE 1SEUA 3K58A 2MX9A 1UHEA 4NOHA 3K7AL 1OA7A 1B13A 1TWGL 4CEIA 2WB1P 4B8CD 5RXNA 1B71A 2LCQA 2C6BA 1A36A 3GTQL 3P2AA 3MSUA 3HAXC 1PFUA 4XGHA 2B9SB 4KB4A 4FXDA 1YUXA 2VPWA 3S1QL 3M4OL 1TWAA 4CRZA 4GA6A 1QCVA 1I3QL 1PZXA 1R7RA 1FDIA 4FGUA 2B63L 4FG4A 4QIWP 3LR2A 5IP7L 1YNJD 3GTJA 4AYBP 3LWOB 1DVBA 5IY0A 1BQ9A 3HU1A 2PVXA 1ISEA 4AI2A 4RXNA 1R0HA 4ZN3B 3LWRB 3KYVA 1A35A 4DMRA 2O5JD 2G5DA 2ZIXA 1V9MA 1RDGA 3ML1A 1E8JA 1IRNA 1T9QA 1TWFL 5MF6A 1QDNA 1BFYA 4KDDA 3HOUL 2BH0A 1Y4ZA 5GLYA 4POFA 1GE9A 3KYXA 3M3YL 7RXNA 2KKDA 2NVYA 2R92L 1PQEA 1SFOL 3PIO1 2LKMB 3QQ7A 4NOLA 3PLXB 4KDLA 4G6BA 1R9TA 4TPUA 4AR3A 4JAFA 3GTML 2WB1A 2ERSA 2V3VA 3H97A 1MIUA 5FTJA 2XJPA 3P8BA 3D30A 1R0JA 2PJHB 5JSNB 5FTLA 1S30A 5T5ID 2KN9A 2E2HA 3K5NA 4RV0A 3GTGA 4AHCA 4AVRA 1W27A 2K2DA 5GAHc 1H7VA 5MGNA 4KC6A 2VUMA 3I4ML 4QIWA 2Z3RB 2YIIA 4AYBA 1CR5A 4FERA 1E5VA 3LF9A 1KQFA 3PZAA 4C3HL 2JIRA 4JJOA 4D3YA 2CKCA 1HQMD 3GTPA 1YLEA 3K5OA 3CZBA 1IU5A 1LTLA 2LTHA 3HU3A 1I50L 4AR4A 1JYBA 3LWQB 3HOWL 3QQCE 3LR8A 4BXXL 3M3GA 4JLRC 1RB9A 3K5LA 3HKZA 2PI8A 2EZCA 3GTOL 1Y1WL 3K59A 1TWCL 3WWLA 2HR5A 3HJYB 3RZ6A 1PQHA 4JAGA 5FLML 2JI1A 4FYDA 5M3FL 2HROA 4AHZA 2LPJA 3HOZL 1K83L 1EZBA 4AR5A 4D7ZB 4C6GA 3TM7B 2YUJA 2K3OA 2JI2A 1A31A 1YUZA 5H4UA 3S1NL 3LPEB 2F4QA 2M4YA 4K9FA 3IR7A 4KDIA 3SS2A 3LRDA 2V0FA 1T6JA 3OUGA 1R0GA 1EK8A 3MAQA 5GAGc 3ENGA 4JP7A 2WAQP 6RXNA 3B0AB 2HVYC 5C4XL 1R0FA 4UY81 4AZDA 3FKIA 5AI3A 1FHMA 4YWLA 1ZYMA 2VPXA 2Z3QB 1R49A 1HD5A 4GS7D 3X2PA 3J7Z1 1VC3B 2CKAA 5FTNA 2AQLA 5EIOC 3X2JA 1LKOA 3I4NL 1N10A 4AR6A 3LR6A 4NOMA 1E18A 2R7ZA 2JA6A 1SIWA 1VZHA 1SMUA 2EEOB 2NVTL 3NZ4A 1NH3A 4Q5GA 2DSXA 2JA5L 4BY7L 3GTKL 5CQGA 4A3CL 3GTJL 4TVMA 3S17L 3GTQA 1RDVA 1VCXA 1I6VD 4LHNA 2RDVA 4A3KL 1WCML 5IYCL 1B2OA 1TWHL 4H3TA 1S2ZA 2VPZA 2PMZP 4X6AL 3MPSA 2XJVA 4CS0A 5MLC3 4C2M1 5MFPA 2PJJA 1BW3A 1IROA 1S3SA 1CZ4A 4OYDB
chains in the Genus database with same CATH topology
3KYYA 5GAEc 1DX8A 4JADA 4GFQA 2N1DB 2BE5D 1PT0A 1SMWA 1E60A 4KO8A 2R93A 5B6CA 2MQAA 2VPYA 3O5AA 1K4TA 4ZN1B 1TWFA 1OWBA 4U671 1T8IA 5AN9H 2R92A 4AHXA 1SFOA 2QL0A 5DYGA 1OWCA 1E61A 1PPYA 3DU6A 1RWDA 4O26A 2MX8A 1YNND 5MLC9 2K3QA 1SC7A 5H1Sc 2XJQA 5C9HA 2N3EA 2FIPA 1ZYRD 2PMZA 4D3ZA 3K57A 1Y5IA 2XJTA 4V196 3IAYA 2F5JA 1T9PA 2GAEA 2Y0NA 2B5ID 5GADc 1IW7D 3DU5A 4CRYG 1NNQA 1Q8IA 4Q5VA 1CADA 3K5MA 1WLFA 1S24A 1ODHA 1H5NA 1QCSA 1I50A 2IV2X 2X0PA 2M6OA 2PNWA 1Q16A 4AHYA 4L8IA 1CZ5A 2NYDA 1RYQA 3IU3I 3WWNB 1DMRA 1TGOA 4XXBB 4AI0A 3GTOA 1Y1WA 1TWCA 2VL6A 2PYAA 4AOKB 1IU6A 5FTKA 4YWMA 1R0IA 2E7ZA 1ZC1A 1DMSA 2YU9A 2FIOA 2M6PA 3CQZA 1K83A 2JIOA 2GMGA 2JIPA 2C6AA 2XJRA 3IR6A 1RYTA 4IP8A 3PKJA 3K35A 3P9AA 2JA7A 2MS3A 1ZRPA 5GLFA 4KB2A 3KYUA 4AAYA 2A6HD 3QVDA 4F3EA 5C18A 2G6GA 1BQ8A 1KQGA 2JIQA 1TWGA 1YK4A 1LPQA 1DD5A 5IZ2A 1AA6A 4WFN1 1UHDA 5DM71 2M4VA 1RRJA 5DM61 1I3QA 2CW0D 1NXGA 1R27A 4AI3A 4NOKA 2B63A 3TIWA 2JA5A 2H12A 1K4SA 3GTKA 1E32A 1OGYA 3PKIA 2WAQA 2PSMC 4AI1A 8RXNA 3U4QA 1QYBA 1CAAA 1WCMA 1TWHA 1R5ZA 5FTMA 4AHWA 4ME3A 3ZG6A 2ERJA 3PIP1 1FDOA 1LKPA 3DMRA 1BE7A 1PYQA 2PICA 4CEJA 3CF2A 1EJ9A 1C09A 5JVG1 1SMYD 3KYLA 5JVH1 3PWFA 5MFZA 1WQGA 2NVXA 1WJVA 3WVOA 3NFPI 4POGA 3QQ8A 5EPPA 2E2IA 3KYWA 1EH1A 3GTMA 1G8KA 2JI3A 4JAEA 2A68D 2A69D 4LMOA 1WQHA 2LPIA 1IS1A 1SMMA 4FBSA 5DYIA 1TMOA 2L0ZA 2A6ED 5JSBB 2DMRA 5C1BA 1Z92B 3QWZA 5T5MD 2AE0X 3GTLA 2NAPA 3M4AA 3QC8A 4IP9A 2V0EA 3J7Y1 4AONB 3RYGA 1VZGA 3A44A 1YK5A 4EJ3A 2VK9A 1H0HA 5AI2A 1EU1A 2JIMA 4E6YA 2NYAA 2CR8A 2V45A 3SJRA 2V3BB 4AN8A 1NXEA 2C45A 2AYJA 1PQFA 1B2JA 3LHPS 1YV1A 1RR8C 1BRFA 4KODA 4LHLA 4GA5A 1TL8A 1Y698 1G8JA 5EINC 1FHHA 1T9OA 1WQFA 1PYUB 1AW8B 2XJUA 2KI8A 2K3NA 2Y0SA 3LNLA 5K2ME 1VZIA 3IR5A 2X0QA 3RZTA 3B08B 2PPTA 2XJSA 1LKMA 2PVEA 4KAWX 2LYIA 3H0GA 1Y1VA 2J9UB 4CEHA 4C2MA 4QCLA 1PT1A 2X0OA 3HU2A 3U44A 4KLNA 2R4GA 3VPBE 1SEUA 3K58A 2MX9A 1UHEA 4NOHA 1B13A 4CEIA 4B8CD 5RXNA 1B71A 2LCQA 2C6BA 1A36A 3P2AA 3MSUA 4XGHA 2B9SB 4KB4A 4FXDA 1YUXA 2VPWA 4CRZA 1TWAA 4GA6A 1QCVA 1R7RA 1FDIA 4FGUA 3LR2A 1YNJD 3GTJA 1DVBA 5IY0A 1BQ9A 3HU1A 2PVXA 1ISEA 4AI2A 4RXNA 1R0HA 4ZN3B 3KYVA 1A35A 4DMRA 2O5JD 2G5DA 2ZIXA 1V9MA 1RDGA 3ML1A 1E8JA 1IRNA 1T9QA 5MF6A 1QDNA 1BFYA 4KDDA 1Y4ZA 4POFA 1GE9A 3KYXA 7RXNA 2KKDA 2NVYA 1PQEA 3PIO1 2LKMB 3QQ7A 4NOLA 3PLXB 4KDLA 4G6BA 1R9TA 4TPUA 4AR3A 4JAFA 2WB1A 2ERSA 2V3VA 1MIUA 5FTJA 2XJPA 3P8BA 1R0JA 2PJHB 5JSNB 5FTLA 1S30A 5T5ID 2KN9A 2E2HA 3K5NA 4RV0A 3GTGA 4AHCA 1H7VA 2K2DA 5GAHc 5MGNA 4KC6A 2VUMA 4QIWA 2Z3RB 4AYBA 1CR5A 1E5VA 3LF9A 1KQFA 3PZAA 2JIRA 4D3YA 2CKCA 1HQMD 3GTPA 1YLEA 3K5OA 3CZBA 1IU5A 1LTLA 2LTHA 3HU3A 4AR4A 1JYBA 3QQCE 3LR8A 4JLRC 1RB9A 3K5LA 3HKZA 2PI8A 3K59A 3WWLA 2HR5A 3RZ6A 1PQHA 4JAGA 2JI1A 4FYDA 4AHZA 2LPJA 4AR5A 4D7ZB 3TM7B 2YUJA 2K3OA 2JI2A 1A31A 1YUZA 3LPEB 2F4QA 2M4YA 4K9FA 3IR7A 4KDIA 3SS2A 3LRDA 2V0FA 3OUGA 1R0GA 1EK8A 3MAQA 5GAGc 6RXNA 3B0AB 1R0FA 4UY81 4AZDA 3FKIA 5AI3A 1FHMA 4YWLA 2VPXA 2Z3QB 1R49A 4GS7D 3J7Z1 1VC3B 2CKAA 5FTNA 2AQLA 5EIOC 1LKOA 4AR6A 3LR6A 4NOMA 1E18A 2R7ZA 2JA6A 1SIWA 1VZHA 1SMUA 2EEOB 1NH3A 4Q5GA 2DSXA 5CQGA 4TVMA 3GTQA 1RDVA 1VCXA 1I6VD 4LHNA 2RDVA 1B2OA 4H3TA 1S2ZA 2VPZA 3MPSA 2XJVA 4CS0A 5MLC3 5MFPA 2PJJA 1IROA 1S3SA 1CZ4A 4OYDB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVX A;  2VUM A;  3HKZ A;  3H0G A;  1Y1V A;  2A6E D;  4QIW A;  2A6H D;  3GTK A;  4AYB A;  2E2I A;  2WAQ A;  4C2M A;  1YNJ D;  1YNN D;  2BE5 D;  1R9T A;  3GTJ A;  2YU9 A;  3GTM A;  3FKI A;  1TWG A;  1WCM A;  3CQZ A;  1TWH A;  1K83 A;  3GTL A;  2R93 A;  2A68 D;  2WB1 A;  3GTQ A;  1HQM D;  3GTP A;  1I50 A;  1I6V D;  2A69 D;  2O5J D;  1TWF A;  1ZYR D;  2PMZ A;  2Y0S A;  2NVY A;  2E2H A;  1TWA A;  1I3Q A;  2CW0 D;  3GTG A;  2R92 A;  2R7Z A;  2JA6 A;  1SFO A;  2JA7 A;  1SMY D;  3GTO A;  1Y1W A;  2B63 A;  1TWC A;  1IW7 D;  2JA5 A; 
#chains in the Genus database with same CATH topology
 3KYY A;  5GAE c;  5M5Y L;  1DX8 A;  3SUK A;  4CQ5 A;  4JAD A;  4GFQ A;  2N1D B;  2NVX L;  2BE5 D;  3X2I A;  1PT0 A;  3S1R L;  3MQK B;  1SMW A;  2E2I L;  1R9T L;  2R93 A;  1E60 A;  4KO8 A;  4C5R A;  5B6C A;  3FDJ A;  2MQA A;  2VPY A;  3O5A A;  1K4T A;  4ZN1 B;  4ENG A;  2APO B;  1TWF A;  1WC2 A;  4A3L L;  1OWB A;  4U67 1;  1T8I A;  5AN9 H;  2R92 A;  4AHX A;  1SFO A;  2QL0 A;  5DYG A;  5GM9 A;  1OWC A;  3EZE A;  1E61 A;  1PPY A;  3DU6 A;  4JCW A;  1RWD A;  5M5W L;  3X2M A;  4O26 A;  2MX8 A;  4C3J L;  4JS7 A;  1YNN D;  2EZB A;  5MLC 9;  1PFY A;  3X2N A;  2K3Q A;  4A3J L;  1SC7 A;  3HJW B;  3H3V M;  3H99 A;  5H1S c;  2XJQ A;  5C9H A;  2N3E A;  2FIP A;  3GTL L;  3GTP L;  1BW4 A;  1ZYR D;  2PMZ A;  4D3Z A;  3K57 A;  4C3I L;  1Y5I A;  3SUL A;  2XJT A;  3H9C A;  4V19 6;  1QQT A;  4A3M L;  3IAY A;  2F5J A;  1T9P A;  4A3D L;  2GAE A;  4C5S A;  2Y0N A;  2B5I D;  5GAD c;  1IW7 D;  3HOY L;  3DU5 A;  4CRY G;  3HOV L;  1NNQ A;  1Q8I A;  4FFT A;  4Q5V A;  2NVQ L;  1CAD A;  3K5M A;  1WLF A;  1S24 A;  1ODH A;  5M3M L;  1H5N A;  1QCS A;  1I50 A;  3S2H L;  1F4L A;  2IV2 X;  2X0P A;  2M6O A;  1P7P A;  2PNW A;  4A3F L;  1Q16 A;  4AHY A;  5C44 L;  4L8I A;  1CZ5 A;  2NYD A;  1RYQ A;  4A3B L;  3IU3 I;  3WWN B;  1DMR A;  3S16 L;  1TGO A;  1PFW A;  4XXB B;  4AI0 A;  3GTO A;  1Y1W A;  1TWC A;  2VL6 A;  2PYA A;  4AOK B;  1IU6 A;  4BAA A;  4BBS L;  2HCZ X;  5FTK A;  4YWM A;  1R0I A;  2E7Z A;  1ZC1 A;  3EZA A;  2YU9 A;  1DMS A;  3H0G L;  2FIO A;  1Y1V L;  4JP6 A;  2M6P A;  3CQZ A;  1K83 A;  2JIO A;  4C5U A;  4A3E L;  3FKI L;  2GMG A;  2JIP A;  2C6A A;  2XJR A;  3IR6 A;  1RYT A;  2RFK B;  4IP8 A;  3PKJ A;  3K35 A;  2E2J L;  3P9A A;  2JA7 A;  2MS3 A;  2JA6 L;  1TWA L;  1ZRP A;  5GLF A;  4KB2 A;  3H9B A;  3KYU A;  4AAY A;  2A6H D;  4Y7N L;  3QVD A;  4F3E A;  5C18 A;  2G6G A;  4V2Q A;  1BQ8 A;  1KQG A;  2JIQ A;  1TWG A;  1YK4 A;  1LPQ A;  1DD5 A;  5IZ2 A;  1AA6 A;  4WFN 1;  1UHD A;  5DM7 1;  5IYD L;  2M4V A;  1RRJ A;  5DM6 1;  1I3Q A;  2CW0 D;  1NXG A;  1R27 A;  4AI3 A;  4NOK A;  2B63 A;  3TIW A;  2JA5 A;  2MP0 A;  2H12 A;  3SUM A;  1K4S A;  3GTK A;  1E32 A;  1OGY A;  3PKI A;  2WAQ A;  2NVY L;  2PSM C;  4AI1 A;  2JA8 L;  8RXN A;  3U4Q A;  3S2D L;  1QYB A;  1CAA A;  1WCM A;  1TWH A;  3RZD L;  1R5Z A;  5FTM A;  4AHW A;  4ME3 A;  2R93 L;  3ZG6 A;  2ERJ A;  3PIP 1;  3X2L A;  1FDO A;  1LKP A;  3DMR A;  1BE7 A;  1PYQ A;  2EY4 E;  2PIC A;  4V2R A;  4CEJ A;  3CF2 A;  1EJ9 A;  1C09 A;  1T6P A;  5JVG 1;  3S1M L;  1SMY D;  3KYL A;  5JVH 1;  3PWF A;  5MFZ A;  2E2H L;  3GTG L;  1WQG A;  2KQA A;  2NVX A;  3S14 L;  3HKZ P;  1WJV A;  3WVO A;  3NFP I;  4ZM7 A;  4POG A;  3QQ8 A;  4A3I L;  5EPP A;  2E2I A;  3X2K A;  3KYW A;  1EH1 A;  2VUM L;  3GTM A;  1G8K A;  2JI3 A;  4JAE A;  3X2O A;  5FJ8 L;  2A68 D;  3JR7 A;  1Y2M A;  4A93 L;  2A69 D;  2AUS B;  5IYB L;  5C3E L;  3X2H A;  1OA9 A;  4LMO A;  1WQH A;  2HWG A;  2Y0S P;  2LPI A;  1EZA A;  1IS1 A;  1SMM A;  4FBS A;  5DYI A;  1TMO A;  4Y52 L;  2L0Z A;  2A6E D;  5JSB B;  3PO3 L;  4BY1 L;  2DMR A;  5C1B A;  1Z92 B;  4L48 A;  3QWZ A;  5T5M D;  2AE0 X;  3GTL A;  4FG2 A;  2AQC A;  2NAP A;  3M4A A;  3QC8 A;  5C4J L;  4IP9 A;  2V0E A;  3J7Y 1;  3PO2 L;  4AON B;  3RYG A;  1VZG A;  3A44 A;  1YK5 A;  4EJ3 A;  2VK9 A;  1H0H A;  5AI2 A;  3SUJ A;  1EU1 A;  2JIM A;  3EZB A;  4E6Y A;  2NYA A;  2CR8 A;  2V45 A;  3SJR A;  2V3B B;  4AN8 A;  1NXE A;  2C45 A;  2AYJ A;  1PQF A;  1B2J A;  3LHP S;  1YV1 A;  1RR8 C;  1BRF A;  4KOD A;  4LHL A;  4GA5 A;  1TL8 A;  1Y69 8;  1G8J A;  1L8F A;  5M5X L;  2YU9 L;  1I6H L;  5EIN C;  1FHH A;  1T9O A;  1WQF A;  1PYU B;  3CQZ L;  1AW8 B;  2XJU A;  3X2G A;  3LWP B;  2K3N A;  2KI8 A;  3PL5 A;  2Y0S A;  3LNL A;  3HOX L;  4BBR L;  1VZI A;  5K2M E;  5GLX A;  3IR5 A;  3S15 L;  2X0Q A;  5IP9 L;  3RZT A;  3B08 B;  1PFV A;  2PPT A;  2XJS A;  1LKM A;  2PVE A;  3RZO L;  2ENG A;  4KAW X;  2R7Z L;  2JA7 L;  4A3G L;  2LYI A;  3H0G A;  1Y1V A;  4BAB A;  2J9U B;  4CEH A;  3LWV B;  4C2M A;  4QCL A;  1PT1 A;  2X0O A;  3HU2 A;  3U44 A;  4KLN A;  2R4G A;  2EZA A;  3VPB E;  1SEU A;  3K58 A;  2MX9 A;  1UHE A;  4NOH A;  3K7A L;  1OA7 A;  1B13 A;  1TWG L;  4CEI A;  2WB1 P;  4B8C D;  5RXN A;  1B71 A;  2LCQ A;  2C6B A;  1A36 A;  3GTQ L;  3P2A A;  3MSU A;  3HAX C;  1PFU A;  4XGH A;  2B9S B;  4KB4 A;  4FXD A;  1YUX A;  2VPW A;  3S1Q L;  3M4O L;  1TWA A;  4CRZ A;  4GA6 A;  1QCV A;  1I3Q L;  1PZX A;  1R7R A;  1FDI A;  4FGU A;  2B63 L;  4FG4 A;  4QIW P;  3LR2 A;  5IP7 L;  1YNJ D;  3GTJ A;  4AYB P;  3LWO B;  1DVB A;  5IY0 A;  1BQ9 A;  3HU1 A;  2PVX A;  1ISE A;  4AI2 A;  4RXN A;  1R0H A;  4ZN3 B;  3LWR B;  3KYV A;  1A35 A;  4DMR A;  2O5J D;  2G5D A;  2ZIX A;  1V9M A;  1RDG A;  3ML1 A;  1E8J A;  1IRN A;  1T9Q A;  1TWF L;  5MF6 A;  1QDN A;  1BFY A;  4KDD A;  3HOU L;  2BH0 A;  1Y4Z A;  5GLY A;  4POF A;  1GE9 A;  3KYX A;  3M3Y L;  7RXN A;  2KKD A;  2NVY A;  2R92 L;  1PQE A;  1SFO L;  3PIO 1;  2LKM B;  3QQ7 A;  4NOL A;  3PLX B;  4KDL A;  4G6B A;  1R9T A;  4TPU A;  4AR3 A;  4JAF A;  3GTM L;  2WB1 A;  2ERS A;  2V3V A;  3H97 A;  1MIU A;  5FTJ A;  2XJP A;  3P8B A;  3D30 A;  1R0J A;  2PJH B;  5JSN B;  5FTL A;  1S30 A;  5T5I D;  2KN9 A;  2E2H A;  3K5N A;  4RV0 A;  3GTG A;  4AHC A;  4AVR A;  1W27 A;  2K2D A;  5GAH c;  1H7V A;  5MGN A;  4KC6 A;  2VUM A;  3I4M L;  4QIW A;  2Z3R B;  2YII A;  4AYB A;  1CR5 A;  4FER A;  1E5V A;  3LF9 A;  1KQF A;  3PZA A;  4C3H L;  2JIR A;  4JJO A;  4D3Y A;  2CKC A;  1HQM D;  3GTP A;  1YLE A;  3K5O A;  3CZB A;  1IU5 A;  1LTL A;  2LTH A;  3HU3 A;  1I50 L;  4AR4 A;  1JYB A;  3LWQ B;  3HOW L;  3QQC E;  3LR8 A;  4BXX L;  3M3G A;  4JLR C;  1RB9 A;  3K5L A;  3HKZ A;  2PI8 A;  2EZC A;  3GTO L;  1Y1W L;  3K59 A;  1TWC L;  3WWL A;  2HR5 A;  3HJY B;  3RZ6 A;  1PQH A;  4JAG A;  5FLM L;  2JI1 A;  4FYD A;  5M3F L;  2HRO A;  4AHZ A;  2LPJ A;  3HOZ L;  1K83 L;  1EZB A;  4AR5 A;  4D7Z B;  4C6G A;  3TM7 B;  2YUJ A;  2K3O A;  2JI2 A;  1A31 A;  1YUZ A;  5H4U A;  3S1N L;  3LPE B;  2F4Q A;  2M4Y A;  4K9F A;  3IR7 A;  4KDI A;  3SS2 A;  3LRD A;  2V0F A;  1T6J A;  3OUG A;  1R0G A;  1EK8 A;  3MAQ A;  5GAG c;  3ENG A;  4JP7 A;  2WAQ P;  6RXN A;  3B0A B;  2HVY C;  5C4X L;  1R0F A;  4UY8 1;  4AZD A;  3FKI A;  5AI3 A;  1FHM A;  4YWL A;  1ZYM A;  2VPX A;  2Z3Q B;  1R49 A;  1HD5 A;  4GS7 D;  3X2P A;  3J7Z 1;  1VC3 B;  2CKA A;  5FTN A;  2AQL A;  5EIO C;  3X2J A;  1LKO A;  3I4N L;  1N10 A;  4AR6 A;  3LR6 A;  4NOM A;  1E18 A;  2R7Z A;  2JA6 A;  1SIW A;  1VZH A;  1SMU A;  2EEO B;  2NVT L;  3NZ4 A;  1NH3 A;  4Q5G A;  2DSX A;  2JA5 L;  4BY7 L;  3GTK L;  5CQG A;  4A3C L;  3GTJ L;  4TVM A;  3S17 L;  3GTQ A;  1RDV A;  1VCX A;  1I6V D;  4LHN A;  2RDV A;  4A3K L;  1WCM L;  5IYC L;  1B2O A;  1TWH L;  4H3T A;  1S2Z A;  2VPZ A;  2PMZ P;  4X6A L;  3MPS A;  2XJV A;  4CS0 A;  5MLC 3;  4C2M 1;  5MFP A;  2PJJ A;  1BW3 A;  1IRO A;  1S3S A;  1CZ4 A;  4OYD B; 
#chains in the Genus database with same CATH homology
 3KYY A;  5GAE c;  1DX8 A;  4JAD A;  4GFQ A;  2N1D B;  2BE5 D;  1PT0 A;  1SMW A;  1E60 A;  4KO8 A;  2R93 A;  5B6C A;  2MQA A;  2VPY A;  3O5A A;  1K4T A;  4ZN1 B;  1TWF A;  1OWB A;  4U67 1;  1T8I A;  5AN9 H;  2R92 A;  4AHX A;  1SFO A;  2QL0 A;  5DYG A;  1OWC A;  1E61 A;  1PPY A;  3DU6 A;  1RWD A;  4O26 A;  2MX8 A;  1YNN D;  5MLC 9;  2K3Q A;  1SC7 A;  5H1S c;  2XJQ A;  5C9H A;  2N3E A;  2FIP A;  1ZYR D;  2PMZ A;  4D3Z A;  3K57 A;  1Y5I A;  2XJT A;  4V19 6;  3IAY A;  2F5J A;  1T9P A;  2GAE A;  2Y0N A;  2B5I D;  5GAD c;  1IW7 D;  3DU5 A;  4CRY G;  1NNQ A;  1Q8I A;  4Q5V A;  1CAD A;  3K5M A;  1WLF A;  1S24 A;  1ODH A;  1H5N A;  1QCS A;  1I50 A;  2IV2 X;  2X0P A;  2M6O A;  2PNW A;  1Q16 A;  4AHY A;  4L8I A;  1CZ5 A;  2NYD A;  1RYQ A;  3IU3 I;  3WWN B;  1DMR A;  1TGO A;  4XXB B;  4AI0 A;  3GTO A;  1Y1W A;  1TWC A;  2VL6 A;  2PYA A;  4AOK B;  1IU6 A;  5FTK A;  4YWM A;  1R0I A;  2E7Z A;  1ZC1 A;  1DMS A;  2YU9 A;  2FIO A;  2M6P A;  3CQZ A;  1K83 A;  2JIO A;  2GMG A;  2JIP A;  2C6A A;  2XJR A;  3IR6 A;  1RYT A;  4IP8 A;  3PKJ A;  3K35 A;  3P9A A;  2JA7 A;  2MS3 A;  1ZRP A;  5GLF A;  4KB2 A;  3KYU A;  4AAY A;  2A6H D;  3QVD A;  4F3E A;  5C18 A;  2G6G A;  1BQ8 A;  1KQG A;  2JIQ A;  1TWG A;  1YK4 A;  1LPQ A;  1DD5 A;  5IZ2 A;  1AA6 A;  4WFN 1;  1UHD A;  5DM7 1;  2M4V A;  1RRJ A;  5DM6 1;  1I3Q A;  2CW0 D;  1NXG A;  1R27 A;  4AI3 A;  4NOK A;  2B63 A;  3TIW A;  2JA5 A;  2H12 A;  1K4S A;  3GTK A;  1E32 A;  1OGY A;  3PKI A;  2WAQ A;  2PSM C;  4AI1 A;  8RXN A;  3U4Q A;  1QYB A;  1CAA A;  1WCM A;  1TWH A;  1R5Z A;  5FTM A;  4AHW A;  4ME3 A;  3ZG6 A;  2ERJ A;  3PIP 1;  1FDO A;  1LKP A;  3DMR A;  1BE7 A;  1PYQ A;  2PIC A;  4CEJ A;  3CF2 A;  1EJ9 A;  1C09 A;  5JVG 1;  1SMY D;  3KYL A;  5JVH 1;  3PWF A;  5MFZ A;  1WQG A;  2NVX A;  1WJV A;  3WVO A;  3NFP I;  4POG A;  3QQ8 A;  5EPP A;  2E2I A;  3KYW A;  1EH1 A;  3GTM A;  1G8K A;  2JI3 A;  4JAE A;  2A68 D;  2A69 D;  4LMO A;  1WQH A;  2LPI A;  1IS1 A;  1SMM A;  4FBS A;  5DYI A;  1TMO A;  2L0Z A;  2A6E D;  5JSB B;  2DMR A;  5C1B A;  1Z92 B;  3QWZ A;  5T5M D;  2AE0 X;  3GTL A;  2NAP A;  3M4A A;  3QC8 A;  4IP9 A;  2V0E A;  3J7Y 1;  4AON B;  3RYG A;  1VZG A;  3A44 A;  1YK5 A;  4EJ3 A;  2VK9 A;  1H0H A;  5AI2 A;  1EU1 A;  2JIM A;  4E6Y A;  2NYA A;  2CR8 A;  2V45 A;  3SJR A;  2V3B B;  4AN8 A;  1NXE A;  2C45 A;  2AYJ A;  1PQF A;  1B2J A;  3LHP S;  1YV1 A;  1RR8 C;  1BRF A;  4KOD A;  4LHL A;  4GA5 A;  1TL8 A;  1Y69 8;  1G8J A;  5EIN C;  1FHH A;  1T9O A;  1WQF A;  1PYU B;  1AW8 B;  2XJU A;  2KI8 A;  2K3N A;  2Y0S A;  3LNL A;  5K2M E;  1VZI A;  3IR5 A;  2X0Q A;  3RZT A;  3B08 B;  2PPT A;  2XJS A;  1LKM A;  2PVE A;  4KAW X;  2LYI A;  3H0G A;  1Y1V A;  2J9U B;  4CEH A;  4C2M A;  4QCL A;  1PT1 A;  2X0O A;  3HU2 A;  3U44 A;  4KLN A;  2R4G A;  3VPB E;  1SEU A;  3K58 A;  2MX9 A;  1UHE A;  4NOH A;  1B13 A;  4CEI A;  4B8C D;  5RXN A;  1B71 A;  2LCQ A;  2C6B A;  1A36 A;  3P2A A;  3MSU A;  4XGH A;  2B9S B;  4KB4 A;  4FXD A;  1YUX A;  2VPW A;  4CRZ A;  1TWA A;  4GA6 A;  1QCV A;  1R7R A;  1FDI A;  4FGU A;  3LR2 A;  1YNJ D;  3GTJ A;  1DVB A;  5IY0 A;  1BQ9 A;  3HU1 A;  2PVX A;  1ISE A;  4AI2 A;  4RXN A;  1R0H A;  4ZN3 B;  3KYV A;  1A35 A;  4DMR A;  2O5J D;  2G5D A;  2ZIX A;  1V9M A;  1RDG A;  3ML1 A;  1E8J A;  1IRN A;  1T9Q A;  5MF6 A;  1QDN A;  1BFY A;  4KDD A;  1Y4Z A;  4POF A;  1GE9 A;  3KYX A;  7RXN A;  2KKD A;  2NVY A;  1PQE A;  3PIO 1;  2LKM B;  3QQ7 A;  4NOL A;  3PLX B;  4KDL A;  4G6B A;  1R9T A;  4TPU A;  4AR3 A;  4JAF A;  2WB1 A;  2ERS A;  2V3V A;  1MIU A;  5FTJ A;  2XJP A;  3P8B A;  1R0J A;  2PJH B;  5JSN B;  5FTL A;  1S30 A;  5T5I D;  2KN9 A;  2E2H A;  3K5N A;  4RV0 A;  3GTG A;  4AHC A;  1H7V A;  2K2D A;  5GAH c;  5MGN A;  4KC6 A;  2VUM A;  4QIW A;  2Z3R B;  4AYB A;  1CR5 A;  1E5V A;  3LF9 A;  1KQF A;  3PZA A;  2JIR A;  4D3Y A;  2CKC A;  1HQM D;  3GTP A;  1YLE A;  3K5O A;  3CZB A;  1IU5 A;  1LTL A;  2LTH A;  3HU3 A;  4AR4 A;  1JYB A;  3QQC E;  3LR8 A;  4JLR C;  1RB9 A;  3K5L A;  3HKZ A;  2PI8 A;  3K59 A;  3WWL A;  2HR5 A;  3RZ6 A;  1PQH A;  4JAG A;  2JI1 A;  4FYD A;  4AHZ A;  2LPJ A;  4AR5 A;  4D7Z B;  3TM7 B;  2YUJ A;  2K3O A;  2JI2 A;  1A31 A;  1YUZ A;  3LPE B;  2F4Q A;  2M4Y A;  4K9F A;  3IR7 A;  4KDI A;  3SS2 A;  3LRD A;  2V0F A;  3OUG A;  1R0G A;  1EK8 A;  3MAQ A;  5GAG c;  6RXN A;  3B0A B;  1R0F A;  4UY8 1;  4AZD A;  3FKI A;  5AI3 A;  1FHM A;  4YWL A;  2VPX A;  2Z3Q B;  1R49 A;  4GS7 D;  3J7Z 1;  1VC3 B;  2CKA A;  5FTN A;  2AQL A;  5EIO C;  1LKO A;  4AR6 A;  3LR6 A;  4NOM A;  1E18 A;  2R7Z A;  2JA6 A;  1SIW A;  1VZH A;  1SMU A;  2EEO B;  1NH3 A;  4Q5G A;  2DSX A;  5CQG A;  4TVM A;  3GTQ A;  1RDV A;  1VCX A;  1I6V D;  4LHN A;  2RDV A;  1B2O A;  4H3T A;  1S2Z A;  2VPZ A;  3MPS A;  2XJV A;  4CS0 A;  5MLC 3;  5MFP A;  2PJJ A;  1IRO A;  1S3S A;  1CZ4 A;  4OYD B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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