5C3EC

Crystal structure of a transcribing rna polymerase ii complex reveals a complete transcription bubble
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
265
structure length
265
Chain Sequence
EGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (8-12)TI9 (204-207)S2 (17-22)TI13 (220-223)AH1 (27-39)O1 (39-41)S10 (152-160)TI6 (164-167)EMPTYS3 (45-54)O2 (127-129)TI1 (74-77)S4 (72-73)TIV4 (124-127)3H1 (77-79)TIV3 (88-91)TI2 (92-95)S7 (119-120)TI3 (93-96)S5 (97-104)3H3 (115-117)TII'1 (148-151)S9 (145-148)S8 (131-132)S12 (228-233)TI4 (136-139)TI5 (163-166)3H4 (168-170)TIV6 (173-176)S11 (176-180)TI8 (184-187)TI7 (181-184)AH3 (197-200)TVIII1 (187-190)TIV7 (193-196)TIV1 (14-17)3H2 (83-85)S6 (110-113)TVIII2 (236-239)TIV2 (22-25)AH2 (60-69)AH4 (240-266)Updating...
connected with : NaN
molecule tags Transferase/dna/rna
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
publication title Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 52
structure length 265
sequence length 265
ec nomenclature
pdb deposition date 2015-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
C PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 DNA-directed RNA polymerase, insert domain 5c3eC02
3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 RNA polymerase, RBP11-like subunit 5c3eC01
2E2HC 2YU9C 5M5YK 3RZOK 4A3CK 3HOXC 5TMCA 2A6HA 4MQ9A 5C3EC 4BY1K 1TWFK 1TWHC 3I4NK 4Y7NK 3H3VL 2E2IK 3I4MC 2NVYK 4A3EK 1I6VA 3DXJA 4BXXC 1I50C 5IYBK 5C44C 4YG2A 3PO2K 4A3IC 3M4OC 4C3JC 3S14C 3S1RC 3H3VD 3GTOC 2CW0A 4Q5SA 3M3YK 4QJVB 2PA8L 4G7ZA 3PO3C 4A3JC 2R93C 2NVTK 3GTQK 4C3HC 2E2JK 4A3GC 3GTGK 2R92K 4LJZA 3FKIC 2WAQL 3K7AK 4YFXA 3CQZK 1WCMC 5M3FK 4A3FK 4A3MC 3S17C 4A3DC 4JK1A 5D4DA 1K83K 5IP9K 1SFOK 2B63C 4A3KK 1TWCC 1Y1VC 4X6AC 2NVQK 3HOZK 3S15K 3S16C 2A68A 5FLMK 4AYBL 4OIQA 4G7OA 4C3IC 4A93K 2JA8K 4OIOA 4OINA 2JA6C 1XPPA 1BDFA 2PPBA 2A6EA 2PA8D 5TMFA 4BBRK 4NOIA 4YFNA 2JA5K 4QIWL 3HOVK 1IW7A 3S2HC 2Y0SL 3H0GC 4A3CC 3GTJK 4BY1C 5C4JK 3HOUK 2NVXK 4Q4ZA 2O5IA 1TWFC 5IYCK 4Y7NC 4Y52C 4XSXA 2E2IC 4A3EC 4C2MK 4LK0A 5IYBC 3S1MK 4XSZA 1HQMA 1TWAK 2Y0SD 3PO2C 4ZH4A 1I3QK 3GTKK 1R9TC 4BBSC 3GTMK 3S1NK 5C44K 5FJ8K 5M5XK 5IP7K 4BY7K 4MEXA 2JA7K 1I6HK 3HOYK 3M3YC 5C4XK 2R7ZK 5IYDK 3WODA 3GTOK 2NVTC 2O5JA 3S1QC 3GTQC 3EQLA 2E2JC 2WAQD 1Y1WK 3GTGC 2R92C 3K7AC 1SMYA 3CQZC 3GTLC 4A3BK 3S2DK 3GTPK 4A3FC 3RZDK 4A3LK 4BY7C 2A69A 5IP9C 5M3MK 1SFOC 3S1NC 3S15C 4A3KC 2NVQC 4YFKA 3HOZC 1TWGK 1WCMK 3HOWK 4AYBD 3S1QK 5FLMC 3I4NC 2E2HK 2YU9K 5M5WK 4OIPA 4A93C 2NVYC 2JA8C 3HOXK 3RZOC 5C3EK 2JA5C 4QJVA 2VUMK 4QIWD 1TWHK 4KN4A 3I4MK 4XLPA 2PMZL 4BXXK 1I50K 5C4JC 3HOUC 2NVXC 1YNNA 5IYCC 2BE5A 3H0GK 4A3IK 4C2MC 3M4OK 4C3JK 3S1MC 3S14K 1TWAC 3S1RK 4KN7A 4LLGA 2WB1L 2PMZD 4Y52K 1I3QC 3GTKC 3GTMC 3PO3K 5IP7C 4A3JK 2JA7C 1I6HC 1R9TK 4BBSK 2R93K 3HKZL 3HOYC 4C3HK 2WB1D 5IYDC 2R7ZC 5C4XC 4A3GK 1K83C 3FKIK 1YNJA 4A3MK 4LK1A 3S17K 4A3DK 1Y1WC 2B63K 3HKZD 1TWCK 1Y1VK 4X6AK 4A3BC 4BBRC 3S2DC 4GZYA 3S16K 4XLNA 3GTPC 4A3LC 3RZDC 4MEYA 4G7HA 2VUMC 4C3IK 1ZYRA 3HOVC 2JA6K 1TWGC 3GTJC 3HOWC 3GTLK 4OIRA 4KMUA 3S2HK
chains in the Genus database with same CATH superfamily
5M5YK 4A3CK 1VGXA 3PIOS 2NVYK 3LAPA 3DXJA 3V4GA 5IYBK 4IOCS 1F9NA 2RGRA 5C44C 2JH3A 3BP8C 3GTGA 3T00A 1WQHA 1KQ4A 1XXCA 4KB4A 3S1RC 3H3VD 1XZPA 2CW0A 4Q5SA 2KPUA 2E2IA 3N0CA 2GSNA 1V5VA 4A3GC 1YCLA 1ZXOA 1K83K 5JVGS 3S1NK 3ADAC 3HOZK 1TWCC 4GTCA 2CFAA 4OIQA 1DD5A 4GTLA 4A93K 2JA8K 2JA6C 4OINA 3GTMA 2JA5K 1FEUA 5TMFA 2R92A 4A3CC 3GTJK 2ZJPS 2XCQA 2O5IA 1VRQC 5IYCK 4Y52C 5IYBC 1TWAK 4ZH4A 1I3QK 3GTKK 4BBSC 1YX2A 4P5AA 5M5XK 1USOA 1WORA 5EGHA 3HOYK 3AQPA 2R7ZK 1O28A 2ZUFA 2YU9A 2EBBA 3EQLA 2KXYA 2WAQD 1Y1WK 5DM7S 1SMYA 4A3BK 1WOSA 4KDDA 4KAWX 3GTPK 4A3LK 2VUMK 3S1NC 3HOVK 3HOZC 1GE9A 4AYBD 3TFIA 3IPJA 4IOAS 2E2HK 5M5WK 4OIPA 4A93C 1WSRA 2JA8C 4KM9A 3GTOA 1RU0A 2JA5C 1J6XA 2P5MA 3OEPA 3LAJA 4BXXK 2R93A 3SZZA 1YNNA 5IYCC 3H0GK 4A3IK 1IE0A 4C3JK 5CJ9A 1TWAC 1IQ0A 1I3QC 3GTKC 4LQYA 4GT9A 4KMDA 4GTDA 2XCRB 4A3JK 1EI6A 3CAGA 3HKZL 3HOYC 1X31C 1I50A 3FOFA 2R7ZC 1IL2A 3FKIK 1WQFA 4WFNS 1JOEA 4LK1A 1TWFA 1Y1WC 2B63K 1Y1VK 4A3BC 4GZYA 3GTPC 4A3LC 4G7HA 2VUMC 4C3IK 3HOVC 4BLBA 1JVIA 1J6WA 4KMUA 3S2HK 2E2HC 5L46A 4BY1K 4MQ9A 3L4KA 3GEIA 3I4NK 2E2IK 2GSUA 3BP3A 4BXXC 3GTQA 4A3IC 4C3JC 1SFOA 1O2FB 3M3YK 5DM6S 3FHZA 4LR2A 4A3JC 3DLLS 4J3NA 2R92K 2WAQL 3FKIC 3CQZK 1WCMC 4KARA 5M3FK 2NVXA 4A3FK 4WF9S 5D4DA 1DCPA 2B63C 2NVQK 1Y1VC 5IORA 2FQTA 4GTEA 3A8KA 5FLMK 4AYBL 5HQHA 4C3IC 3RZOK 4BBRK 4KASA 2PPBA 3S2HC 3T02A 3OPFA 1VLOA 3GEEA 4BY1C 4Q4ZA 4AH6A 4DDQA 2FQOA 2D6FC 2E2IC 2P8TA 4XSZA 2ZJQS 2Y0SD 1O27A 4P5BA 4KATA 4PAAA 1R9TC 1O25A 2JA7K 2ZFZA 3M3YC 5C4XK 4IO9S 3GTOK 1PJ6A 1J98A 2O5JA 3CF5S 1ZBSA 2R92C 5IOTA 3CQZC 3GTLC 4A3FC 3RZDK 1TWGK 2NVQC 4WILA 5FLMC 4WCES 2NVYC 3RZOC 1IBAA 5C3EK 4QIWD 1TWHK 4KN4A 1F7UA 2PMZL 1I50K 1INNA 1DCOA 2RH6A 3HXAA 2BE5A 1F93A 3S14K 4KN7A 2WB1L 3L4JA 1TWCA 4BLAA 3PO3K 1UV7A 2JA7C 2JA6A 5C4XC 1K83C 3ERED 1EQRA 5JFEA 1YNJA 3A8JA 4A3MK 1L0WA 4A3DK 2KWAA 1AB4A 3AD9C 4XLNA 4GFQA 3RZDC 2PHCB 1WOOA 2V6TA 1TWGC 3GTJC 2XCOA 1BGWA 1PJ7A 4P9SA 4G0WA 2A6HA 5C3EC 1TWHC 1HI9A 4Y7NK 3H3VL 1I50C 2W7VA 1O2BA 2KQ1A 3S14C 3GIRA 4QJVB 4G7ZA 3PO3C 2NVTK 2JA5A 3GTGK 4YFXA 1ISEA 1O29A 3SZYA 1ZVUA 4A3MC 4LOWA 4A3DC 4BY7K 3S15K 4A3KK 4C45A 1TWAA 4G7OA 1I3QA 3GTKA 5HL7S 2GAHC 2A6EA 2PA8D 4NOIA 4YFNA 3G4CA 4QIWL 1IW7A 3H0GC 3AH5A 3GSIA 2R7ZA 2ZJRS 4Y7NC 4XSXA 4C2MK 4LK0A 1Y1WA 3GTMK 3MMLB 4WJ4A 5C44K 5FJ8K 1J6VA 2VUMA 4MEXA 1B4BA 3GDZA 3AQOA 4FZBA 4GTAA 2L5NA 2E2HA 1IS1A 1WQGA 2NVTC 3GTGC 1BS2A 3S2DK 4BY7C 2A69A 5M3MK 3S15C 4A3KC 4YFKA 1DCHA 4O2DA 1F7VA 3I4NC 3FOEA 2YU9K 3QX3A 3HOXK 4QJVA 3I4MK 4XLPA 2V6SA 1PJ5A 4GTFA 3FKIA 3M4OK 4C2MC 1WCMA 4G0UA 2V6UA 3NUHA 4Y52K 2B63A 1Y1VA 3GTMC 3TFHA 1EFWA 4BBSK 2R93K 1O2AA 4C3HK 1WSVA 2GSOA 3AD7C 2ZUEA 3S17K 4RMFA 3HKZD 4X6AK 3S2DC 4BBRC 3S16K 4MEYA 1XZQB 4U67S 1ZYRA 3GEHA 4KB2A 1R9TA 4OIRA 2PA8L 4G0VA 4KM8A 3VA7A 2YU9C 3HOXC 5TMCA 1TWFK 3I4MC 4A3EK 1I6VA 1WOPA 4YG2A 3JSTA 3PO2K 1WIHA 3M4OC 3CQZA 3GTLA 3GTOC 1EH1A 2NVYA 2R93C 1XXAA 3GTQK 4C3HC 2E2JK 2L3UA 4LJZA 4KMAA 3K7AK 5EGEA 3N0BA 3S0XA 3S17C 5IP9K 4JK1A 1SFOK 3LYWA 4X6AC 3S16C 2A68A 4WFAS 5JVOA 4KMHA 1O24A 4BKWA 3TFJA 4OIOA 1XPPA 1BDFA 4FM9A 1XXBA 2Y0SL 2JA7A 5C4JK 4PABA 3HOUK 2NVXK 1TWFC 1K83A 4M1XA 4A3EC 3S1MK 1HQMA 3PO2C 3TTGA 3Q3QA 1XZQA 5JVHS 5IP7K 1I6HK 2GAGC 1TWGA 3BUEA 3GTJA 5IYDK 3LPXA 3WODA 1O26A 4KC6A 3N3YA 1EK8A 3GTQC 2E2JC 1TWHA 1USMA 3K7AC 1XZPB 5HL8A 5IP9C 1SFOC 3A8IA 4GTBA 3HOWK 1WCMK 3S1QK 1JQWA 3OREA 5CHPA 5E68A 5C4JC 3HOUC 4ILDA 2NVXC 3GTPA 4XCHA 1B4AA 3S1MC 1ZQ1C 3S1RK 2CFAB 3G4AA 4LLGA 2Y3PA 2PMZD 1VJEA 3AD8C 5IP7C 1BJTA 1I6HC 5TJ3A 1R9TK 1C0AA 2WB1D 5IYDC 5IOSA 4A3GK 5IOQA 3H0GA 3PIPS 1G51A 1VH2A 4WFBS 1TWCK 4WJ3M 3T01A 2JA6K 3HOWC 3GTLK 3S1QC
chains in the Genus database with same CATH topology
2E2HC 2YU9C 5M5YK 3RZOK 4A3CK 3HOXC 5TMCA 2A6HA 4MQ9A 5C3EC 4BY1K 1TWFK 1TWHC 3I4NK 4Y7NK 3H3VL 2E2IK 3I4MC 2NVYK 4A3EK 1I6VA 3DXJA 4BXXC 1I50C 5IYBK 5C44C 4YG2A 3PO2K 4A3IC 3M4OC 4C3JC 3S14C 3S1RC 3H3VD 3GTOC 2CW0A 4Q5SA 3M3YK 4QJVB 2PA8L 4G7ZA 3PO3C 4A3JC 2R93C 2NVTK 3GTQK 4C3HC 2E2JK 4A3GC 3GTGK 2R92K 4LJZA 3FKIC 2WAQL 3K7AK 4YFXA 3CQZK 1WCMC 5M3FK 4A3FK 4A3MC 3S17C 4A3DC 4JK1A 5D4DA 1K83K 5IP9K 1SFOK 2B63C 4A3KK 1TWCC 1Y1VC 4X6AC 2NVQK 3HOZK 3S15K 3S16C 2A68A 5FLMK 4AYBL 4OIQA 4G7OA 4C3IC 4A93K 2JA8K 4OIOA 4OINA 2JA6C 1XPPA 1BDFA 2PPBA 2A6EA 2PA8D 5TMFA 4BBRK 4NOIA 4YFNA 2JA5K 4QIWL 3HOVK 1IW7A 3S2HC 2Y0SL 3H0GC 4A3CC 3GTJK 4BY1C 5C4JK 3HOUK 2NVXK 4Q4ZA 2O5IA 1TWFC 5IYCK 4Y7NC 4Y52C 4XSXA 2E2IC 4A3EC 4C2MK 4LK0A 5IYBC 3S1MK 4XSZA 1HQMA 1TWAK 2Y0SD 3PO2C 4ZH4A 1I3QK 3GTKK 1R9TC 4BBSC 3GTMK 3S1NK 5C44K 5FJ8K 5M5XK 5IP7K 4BY7K 4MEXA 2JA7K 1I6HK 3HOYK 3M3YC 5C4XK 2R7ZK 5IYDK 3WODA 3GTOK 2NVTC 2O5JA 3S1QC 3GTQC 3EQLA 2E2JC 2WAQD 1Y1WK 3GTGC 2R92C 3K7AC 1SMYA 3CQZC 3GTLC 4A3BK 3S2DK 3GTPK 4A3FC 3RZDK 4A3LK 4BY7C 2A69A 5IP9C 5M3MK 1SFOC 3S1NC 3S15C 4A3KC 2NVQC 4YFKA 3HOZC 1TWGK 1WCMK 3HOWK 4AYBD 3S1QK 5FLMC 3I4NC 2E2HK 2YU9K 5M5WK 4OIPA 4A93C 2NVYC 2JA8C 3HOXK 3RZOC 5C3EK 2JA5C 4QJVA 2VUMK 4QIWD 1TWHK 4KN4A 3I4MK 4XLPA 2PMZL 4BXXK 1I50K 5C4JC 3HOUC 2NVXC 1YNNA 5IYCC 2BE5A 3H0GK 4A3IK 4C2MC 3M4OK 4C3JK 3S1MC 3S14K 1TWAC 3S1RK 4KN7A 4LLGA 2WB1L 2PMZD 4Y52K 1I3QC 3GTKC 3GTMC 3PO3K 5IP7C 4A3JK 2JA7C 1I6HC 1R9TK 4BBSK 2R93K 3HKZL 3HOYC 4C3HK 2WB1D 5IYDC 2R7ZC 5C4XC 4A3GK 1K83C 3FKIK 1YNJA 4A3MK 4LK1A 3S17K 4A3DK 1Y1WC 2B63K 3HKZD 1TWCK 1Y1VK 4X6AK 4A3BC 4BBRC 3S2DC 4GZYA 3S16K 4XLNA 3GTPC 4A3LC 3RZDC 4MEYA 4G7HA 2VUMC 4C3IK 1ZYRA 3HOVC 2JA6K 1TWGC 3GTJC 3HOWC 3GTLK 4OIRA 4KMUA 3S2HK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2H C;  2YU9 C;  5M5Y K;  3RZO K;  4A3C K;  3HOX C;  5TMC A;  2A6H A;  4MQ9 A;  5C3E C;  4BY1 K;  1TWF K;  1TWH C;  3I4N K;  4Y7N K;  3H3V L;  2E2I K;  3I4M C;  2NVY K;  4A3E K;  1I6V A;  3DXJ A;  4BXX C;  1I50 C;  5IYB K;  5C44 C;  4YG2 A;  3PO2 K;  4A3I C;  3M4O C;  4C3J C;  3S14 C;  3S1R C;  3H3V D;  3GTO C;  2CW0 A;  4Q5S A;  3M3Y K;  4QJV B;  2PA8 L;  4G7Z A;  3PO3 C;  4A3J C;  2R93 C;  2NVT K;  3GTQ K;  4C3H C;  2E2J K;  4A3G C;  3GTG K;  2R92 K;  4LJZ A;  3FKI C;  2WAQ L;  3K7A K;  4YFX A;  3CQZ K;  1WCM C;  5M3F K;  4A3F K;  4A3M C;  3S17 C;  4A3D C;  4JK1 A;  5D4D A;  1K83 K;  5IP9 K;  1SFO K;  2B63 C;  4A3K K;  1TWC C;  1Y1V C;  4X6A C;  2NVQ K;  3HOZ K;  3S15 K;  3S16 C;  2A68 A;  5FLM K;  4AYB L;  4OIQ A;  4G7O A;  4C3I C;  4A93 K;  2JA8 K;  4OIO A;  4OIN A;  2JA6 C;  1XPP A;  1BDF A;  2PPB A;  2A6E A;  2PA8 D;  5TMF A;  4BBR K;  4NOI A;  4YFN A;  2JA5 K;  4QIW L;  3HOV K;  1IW7 A;  3S2H C;  2Y0S L;  3H0G C;  4A3C C;  3GTJ K;  4BY1 C;  5C4J K;  3HOU K;  2NVX K;  4Q4Z A;  2O5I A;  1TWF C;  5IYC K;  4Y7N C;  4Y52 C;  4XSX A;  2E2I C;  4A3E C;  4C2M K;  4LK0 A;  5IYB C;  3S1M K;  4XSZ A;  1HQM A;  1TWA K;  2Y0S D;  3PO2 C;  4ZH4 A;  1I3Q K;  3GTK K;  1R9T C;  4BBS C;  3GTM K;  3S1N K;  5C44 K;  5FJ8 K;  5M5X K;  5IP7 K;  4BY7 K;  4MEX A;  2JA7 K;  1I6H K;  3HOY K;  3M3Y C;  5C4X K;  2R7Z K;  5IYD K;  3WOD A;  3GTO K;  2NVT C;  2O5J A;  3S1Q C;  3GTQ C;  3EQL A;  2E2J C;  2WAQ D;  1Y1W K;  3GTG C;  2R92 C;  3K7A C;  1SMY A;  3CQZ C;  3GTL C;  4A3B K;  3S2D K;  3GTP K;  4A3F C;  3RZD K;  4A3L K;  4BY7 C;  2A69 A;  5IP9 C;  5M3M K;  1SFO C;  3S1N C;  3S15 C;  4A3K C;  2NVQ C;  4YFK A;  3HOZ C;  1TWG K;  1WCM K;  3HOW K;  4AYB D;  3S1Q K;  5FLM C;  3I4N C;  2E2H K;  2YU9 K;  5M5W K;  4OIP A;  4A93 C;  2NVY C;  2JA8 C;  3HOX K;  3RZO C;  5C3E K;  2JA5 C;  4QJV A;  2VUM K;  4QIW D;  1TWH K;  4KN4 A;  3I4M K;  4XLP A;  2PMZ L;  4BXX K;  1I50 K;  5C4J C;  3HOU C;  2NVX C;  1YNN A;  5IYC C;  2BE5 A;  3H0G K;  4A3I K;  4C2M C;  3M4O K;  4C3J K;  3S1M C;  3S14 K;  1TWA C;  3S1R K;  4KN7 A;  4LLG A;  2WB1 L;  2PMZ D;  4Y52 K;  1I3Q C;  3GTK C;  3GTM C;  3PO3 K;  5IP7 C;  4A3J K;  2JA7 C;  1I6H C;  1R9T K;  4BBS K;  2R93 K;  3HKZ L;  3HOY C;  4C3H K;  2WB1 D;  5IYD C;  2R7Z C;  5C4X C;  4A3G K;  1K83 C;  3FKI K;  1YNJ A;  4A3M K;  4LK1 A;  3S17 K;  4A3D K;  1Y1W C;  2B63 K;  3HKZ D;  1TWC K;  1Y1V K;  4X6A K;  4A3B C;  4BBR C;  3S2D C;  4GZY A;  3S16 K;  4XLN A;  3GTP C;  4A3L C;  3RZD C;  4MEY A;  4G7H A;  2VUM C;  4C3I K;  1ZYR A;  3HOV C;  2JA6 K;  1TWG C;  3GTJ C;  3HOW C;  3GTL K;  4OIR A;  4KMU A;  3S2H K; 
#chains in the Genus database with same CATH topology
 5M5Y K;  4A3C K;  1VGX A;  3PIO S;  2NVY K;  3LAP A;  3DXJ A;  3V4G A;  5IYB K;  4IOC S;  1F9N A;  2RGR A;  5C44 C;  2JH3 A;  3BP8 C;  3GTG A;  3T00 A;  1WQH A;  1KQ4 A;  1XXC A;  4KB4 A;  3S1R C;  3H3V D;  1XZP A;  2CW0 A;  4Q5S A;  2KPU A;  2E2I A;  3N0C A;  2GSN A;  1V5V A;  4A3G C;  1YCL A;  1ZXO A;  1K83 K;  5JVG S;  3S1N K;  3ADA C;  3HOZ K;  1TWC C;  4GTC A;  2CFA A;  4OIQ A;  1DD5 A;  4GTL A;  4A93 K;  2JA8 K;  2JA6 C;  4OIN A;  3GTM A;  2JA5 K;  1FEU A;  5TMF A;  2R92 A;  4A3C C;  3GTJ K;  2ZJP S;  2XCQ A;  2O5I A;  1VRQ C;  5IYC K;  4Y52 C;  5IYB C;  1TWA K;  4ZH4 A;  1I3Q K;  3GTK K;  4BBS C;  1YX2 A;  4P5A A;  5M5X K;  1USO A;  1WOR A;  5EGH A;  3HOY K;  3AQP A;  2R7Z K;  1O28 A;  2ZUF A;  2YU9 A;  2EBB A;  3EQL A;  2KXY A;  2WAQ D;  1Y1W K;  5DM7 S;  1SMY A;  4A3B K;  1WOS A;  4KDD A;  4KAW X;  3GTP K;  4A3L K;  2VUM K;  3S1N C;  3HOV K;  3HOZ C;  1GE9 A;  4AYB D;  3TFI A;  3IPJ A;  4IOA S;  2E2H K;  5M5W K;  4OIP A;  4A93 C;  1WSR A;  2JA8 C;  4KM9 A;  3GTO A;  1RU0 A;  2JA5 C;  1J6X A;  2P5M A;  3OEP A;  3LAJ A;  4BXX K;  2R93 A;  3SZZ A;  1YNN A;  5IYC C;  3H0G K;  4A3I K;  1IE0 A;  4C3J K;  5CJ9 A;  1TWA C;  1IQ0 A;  1I3Q C;  3GTK C;  4LQY A;  4GT9 A;  4KMD A;  4GTD A;  2XCR B;  4A3J K;  1EI6 A;  3CAG A;  3HKZ L;  3HOY C;  1X31 C;  1I50 A;  3FOF A;  2R7Z C;  1IL2 A;  3FKI K;  1WQF A;  4WFN S;  1JOE A;  4LK1 A;  1TWF A;  1Y1W C;  2B63 K;  1Y1V K;  4A3B C;  4GZY A;  3GTP C;  4A3L C;  4G7H A;  2VUM C;  4C3I K;  3HOV C;  4BLB A;  1JVI A;  1J6W A;  4KMU A;  3S2H K;  2E2H C;  5L46 A;  4BY1 K;  4MQ9 A;  3L4K A;  3GEI A;  3I4N K;  2E2I K;  2GSU A;  3BP3 A;  4BXX C;  3GTQ A;  4A3I C;  4C3J C;  1SFO A;  1O2F B;  3M3Y K;  5DM6 S;  3FHZ A;  4LR2 A;  4A3J C;  3DLL S;  4J3N A;  2R92 K;  2WAQ L;  3FKI C;  3CQZ K;  1WCM C;  4KAR A;  5M3F K;  2NVX A;  4A3F K;  4WF9 S;  5D4D A;  1DCP A;  2B63 C;  2NVQ K;  1Y1V C;  5IOR A;  2FQT A;  4GTE A;  3A8K A;  5FLM K;  4AYB L;  5HQH A;  4C3I C;  3RZO K;  4BBR K;  4KAS A;  2PPB A;  3S2H C;  3T02 A;  3OPF A;  1VLO A;  3GEE A;  4BY1 C;  4Q4Z A;  4AH6 A;  4DDQ A;  2FQO A;  2D6F C;  2E2I C;  2P8T A;  4XSZ A;  2ZJQ S;  2Y0S D;  1O27 A;  4P5B A;  4KAT A;  4PAA A;  1R9T C;  1O25 A;  2JA7 K;  2ZFZ A;  3M3Y C;  5C4X K;  4IO9 S;  3GTO K;  1PJ6 A;  1J98 A;  2O5J A;  3CF5 S;  1ZBS A;  2R92 C;  5IOT A;  3CQZ C;  3GTL C;  4A3F C;  3RZD K;  1TWG K;  2NVQ C;  4WIL A;  5FLM C;  4WCE S;  2NVY C;  3RZO C;  1IBA A;  5C3E K;  4QIW D;  1TWH K;  4KN4 A;  1F7U A;  2PMZ L;  1I50 K;  1INN A;  1DCO A;  2RH6 A;  3HXA A;  2BE5 A;  1F93 A;  3S14 K;  4KN7 A;  2WB1 L;  3L4J A;  1TWC A;  4BLA A;  3PO3 K;  1UV7 A;  2JA7 C;  2JA6 A;  5C4X C;  1K83 C;  3ERE D;  1EQR A;  5JFE A;  1YNJ A;  3A8J A;  4A3M K;  1L0W A;  4A3D K;  2KWA A;  1AB4 A;  3AD9 C;  4XLN A;  4GFQ A;  3RZD C;  2PHC B;  1WOO A;  2V6T A;  1TWG C;  3GTJ C;  2XCO A;  1BGW A;  1PJ7 A;  4P9S A;  4G0W A;  2A6H A;  5C3E C;  1TWH C;  1HI9 A;  4Y7N K;  3H3V L;  1I50 C;  2W7V A;  1O2B A;  2KQ1 A;  3S14 C;  3GIR A;  4QJV B;  4G7Z A;  3PO3 C;  2NVT K;  2JA5 A;  3GTG K;  4YFX A;  1ISE A;  1O29 A;  3SZY A;  1ZVU A;  4A3M C;  4LOW A;  4A3D C;  4BY7 K;  3S15 K;  4A3K K;  4C45 A;  1TWA A;  4G7O A;  1I3Q A;  3GTK A;  5HL7 S;  2GAH C;  2A6E A;  2PA8 D;  4NOI A;  4YFN A;  3G4C A;  4QIW L;  1IW7 A;  3H0G C;  3AH5 A;  3GSI A;  2R7Z A;  2ZJR S;  4Y7N C;  4XSX A;  4C2M K;  4LK0 A;  1Y1W A;  3GTM K;  3MML B;  4WJ4 A;  5C44 K;  5FJ8 K;  1J6V A;  2VUM A;  4MEX A;  1B4B A;  3GDZ A;  3AQO A;  4FZB A;  4GTA A;  2L5N A;  2E2H A;  1IS1 A;  1WQG A;  2NVT C;  3GTG C;  1BS2 A;  3S2D K;  4BY7 C;  2A69 A;  5M3M K;  3S15 C;  4A3K C;  4YFK A;  1DCH A;  4O2D A;  1F7V A;  3I4N C;  3FOE A;  2YU9 K;  3QX3 A;  3HOX K;  4QJV A;  3I4M K;  4XLP A;  2V6S A;  1PJ5 A;  4GTF A;  3FKI A;  3M4O K;  4C2M C;  1WCM A;  4G0U A;  2V6U A;  3NUH A;  4Y52 K;  2B63 A;  1Y1V A;  3GTM C;  3TFH A;  1EFW A;  4BBS K;  2R93 K;  1O2A A;  4C3H K;  1WSV A;  2GSO A;  3AD7 C;  2ZUE A;  3S17 K;  4RMF A;  3HKZ D;  4X6A K;  3S2D C;  4BBR C;  3S16 K;  4MEY A;  1XZQ B;  4U67 S;  1ZYR A;  3GEH A;  4KB2 A;  1R9T A;  4OIR A;  2PA8 L;  4G0V A;  4KM8 A;  3VA7 A;  2YU9 C;  3HOX C;  5TMC A;  1TWF K;  3I4M C;  4A3E K;  1I6V A;  1WOP A;  4YG2 A;  3JST A;  3PO2 K;  1WIH A;  3M4O C;  3CQZ A;  3GTL A;  3GTO C;  1EH1 A;  2NVY A;  2R93 C;  1XXA A;  3GTQ K;  4C3H C;  2E2J K;  2L3U A;  4LJZ A;  4KMA A;  3K7A K;  5EGE A;  3N0B A;  3S0X A;  3S17 C;  5IP9 K;  4JK1 A;  1SFO K;  3LYW A;  4X6A C;  3S16 C;  2A68 A;  4WFA S;  5JVO A;  4KMH A;  1O24 A;  4BKW A;  3TFJ A;  4OIO A;  1XPP A;  1BDF A;  4FM9 A;  1XXB A;  2Y0S L;  2JA7 A;  5C4J K;  4PAB A;  3HOU K;  2NVX K;  1TWF C;  1K83 A;  4M1X A;  4A3E C;  3S1M K;  1HQM A;  3PO2 C;  3TTG A;  3Q3Q A;  1XZQ A;  5JVH S;  5IP7 K;  1I6H K;  2GAG C;  1TWG A;  3BUE A;  3GTJ A;  5IYD K;  3LPX A;  3WOD A;  1O26 A;  4KC6 A;  3N3Y A;  1EK8 A;  3GTQ C;  2E2J C;  1TWH A;  1USM A;  3K7A C;  1XZP B;  5HL8 A;  5IP9 C;  1SFO C;  3A8I A;  4GTB A;  3HOW K;  1WCM K;  3S1Q K;  1JQW A;  3ORE A;  5CHP A;  5E68 A;  5C4J C;  3HOU C;  4ILD A;  2NVX C;  3GTP A;  4XCH A;  1B4A A;  3S1M C;  1ZQ1 C;  3S1R K;  2CFA B;  3G4A A;  4LLG A;  2Y3P A;  2PMZ D;  1VJE A;  3AD8 C;  5IP7 C;  1BJT A;  1I6H C;  5TJ3 A;  1R9T K;  1C0A A;  2WB1 D;  5IYD C;  5IOS A;  4A3G K;  5IOQ A;  3H0G A;  3PIP S;  1G51 A;  1VH2 A;  4WFB S;  1TWC K;  4WJ3 M;  3T01 A;  2JA6 K;  3HOW C;  3GTL K;  3S1Q C; 
#chains in the Genus database with same CATH homology
 2E2H C;  2YU9 C;  5M5Y K;  3RZO K;  4A3C K;  3HOX C;  5TMC A;  2A6H A;  4MQ9 A;  5C3E C;  4BY1 K;  1TWF K;  1TWH C;  3I4N K;  4Y7N K;  3H3V L;  2E2I K;  3I4M C;  2NVY K;  4A3E K;  1I6V A;  3DXJ A;  4BXX C;  1I50 C;  5IYB K;  5C44 C;  4YG2 A;  3PO2 K;  4A3I C;  3M4O C;  4C3J C;  3S14 C;  3S1R C;  3H3V D;  3GTO C;  2CW0 A;  4Q5S A;  3M3Y K;  4QJV B;  2PA8 L;  4G7Z A;  3PO3 C;  4A3J C;  2R93 C;  2NVT K;  3GTQ K;  4C3H C;  2E2J K;  4A3G C;  3GTG K;  2R92 K;  4LJZ A;  3FKI C;  2WAQ L;  3K7A K;  4YFX A;  3CQZ K;  1WCM C;  5M3F K;  4A3F K;  4A3M C;  3S17 C;  4A3D C;  4JK1 A;  5D4D A;  1K83 K;  5IP9 K;  1SFO K;  2B63 C;  4A3K K;  1TWC C;  1Y1V C;  4X6A C;  2NVQ K;  3HOZ K;  3S15 K;  3S16 C;  2A68 A;  5FLM K;  4AYB L;  4OIQ A;  4G7O A;  4C3I C;  4A93 K;  2JA8 K;  4OIO A;  4OIN A;  2JA6 C;  1XPP A;  1BDF A;  2PPB A;  2A6E A;  2PA8 D;  5TMF A;  4BBR K;  4NOI A;  4YFN A;  2JA5 K;  4QIW L;  3HOV K;  1IW7 A;  3S2H C;  2Y0S L;  3H0G C;  4A3C C;  3GTJ K;  4BY1 C;  5C4J K;  3HOU K;  2NVX K;  4Q4Z A;  2O5I A;  1TWF C;  5IYC K;  4Y7N C;  4Y52 C;  4XSX A;  2E2I C;  4A3E C;  4C2M K;  4LK0 A;  5IYB C;  3S1M K;  4XSZ A;  1HQM A;  1TWA K;  2Y0S D;  3PO2 C;  4ZH4 A;  1I3Q K;  3GTK K;  1R9T C;  4BBS C;  3GTM K;  3S1N K;  5C44 K;  5FJ8 K;  5M5X K;  5IP7 K;  4BY7 K;  4MEX A;  2JA7 K;  1I6H K;  3HOY K;  3M3Y C;  5C4X K;  2R7Z K;  5IYD K;  3WOD A;  3GTO K;  2NVT C;  2O5J A;  3S1Q C;  3GTQ C;  3EQL A;  2E2J C;  2WAQ D;  1Y1W K;  3GTG C;  2R92 C;  3K7A C;  1SMY A;  3CQZ C;  3GTL C;  4A3B K;  3S2D K;  3GTP K;  4A3F C;  3RZD K;  4A3L K;  4BY7 C;  2A69 A;  5IP9 C;  5M3M K;  1SFO C;  3S1N C;  3S15 C;  4A3K C;  2NVQ C;  4YFK A;  3HOZ C;  1TWG K;  1WCM K;  3HOW K;  4AYB D;  3S1Q K;  5FLM C;  3I4N C;  2E2H K;  2YU9 K;  5M5W K;  4OIP A;  4A93 C;  2NVY C;  2JA8 C;  3HOX K;  3RZO C;  5C3E K;  2JA5 C;  4QJV A;  2VUM K;  4QIW D;  1TWH K;  4KN4 A;  3I4M K;  4XLP A;  2PMZ L;  4BXX K;  1I50 K;  5C4J C;  3HOU C;  2NVX C;  1YNN A;  5IYC C;  2BE5 A;  3H0G K;  4A3I K;  4C2M C;  3M4O K;  4C3J K;  3S1M C;  3S14 K;  1TWA C;  3S1R K;  4KN7 A;  4LLG A;  2WB1 L;  2PMZ D;  4Y52 K;  1I3Q C;  3GTK C;  3GTM C;  3PO3 K;  5IP7 C;  4A3J K;  2JA7 C;  1I6H C;  1R9T K;  4BBS K;  2R93 K;  3HKZ L;  3HOY C;  4C3H K;  2WB1 D;  5IYD C;  2R7Z C;  5C4X C;  4A3G K;  1K83 C;  3FKI K;  1YNJ A;  4A3M K;  4LK1 A;  3S17 K;  4A3D K;  1Y1W C;  2B63 K;  3HKZ D;  1TWC K;  1Y1V K;  4X6A K;  4A3B C;  4BBR C;  3S2D C;  4GZY A;  3S16 K;  4XLN A;  3GTP C;  4A3L C;  3RZD C;  4MEY A;  4G7H A;  2VUM C;  4C3I K;  1ZYR A;  3HOV C;  2JA6 K;  1TWG C;  3GTJ C;  3HOW C;  3GTL K;  4OIR A;  4KMU A;  3S2H K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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