2CRRA

Solution structure of arfgap domain from human smap1
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
141
structure length
141
Chain Sequence
GSSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAISGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (9-12)EMPTYTII1 (12-15)AH1 (16-25)TIV1 (32-35)S1 (43-44)TI1 (45-48)S2 (49-50)AH3 (79-97)AH2 (53-62)TIV5 (64-67)TI2 (63-66)TIV8 (73-76)TIV6 (71-74)TIV9 (97-100)TIV11 (129-132)TI4 (102-105)AH4 (111-122)TIV10 (125-128)TI5 (122-125)3H2 (27-29)Updating...
connected with : NaN
molecule tags Protein transport
source organism Homo sapiens
publication title Solution structure of ArfGap domain from human SMAP1
rcsb
molecule keywords Stromal membrane-associated protein SMAP1B
total genus 23
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2crrA01
3MDBC 3FM8C 3LJUX 3O47A 3DWDA 1DCQA 4F1PA 2CRRA 3LVQE 3SUBA 3LVRE 2P57A 2OWAA 2IQJA 3FEHA 3JUEA 3T9KA 2B0OE 2CRWA
chains in the Genus database with same CATH superfamily
2G43A 2KGIA 3GV4A 1X4JA 1WILA 3O37A 3SOXA 3N9MA 3U5MA 4F52B 2ECWA 2ECGA 5FB1A 4V3LC 1K2FA 3PHDA 4YBMA 2Y43A 5FERA 5H9MA 1WESA 1WEMA 4ZDTA 2KREA 2KR4A 2MA6A 5D1KB 3O34A 4YADA 5LKZA 4MVTA 4PPEA 5EYAF 4FO9A 3LJUX 2I50A 3PUQA 4Z0OA 4LADB 4A49A 1DCQA 5G05B 4R2YA 4QF3A 3QZVA 3N9NA 4F1PA 3O7AA 2L5UA 2PNXA 5I3LA 1HYJA 2CSVA 2JMDA 2XOYA 2XB1A 4S3OB 1MM2A 1WFKA 4QF2A 5H1UA 2LXHC 2YUCA 4TKPB 4PTBA 2B0OE 2CRWA 1WEPA 4Z0RA 1WEEA 4AUQB 5B75A 1FBVA 1MM3A 2IDAA 5TDRA 5SVYA 2LRIC 1IYMA 2MNYA 4A4BA 2YW8A 2QIZA 1LDJB 1Z6UA 3ASLA 1ZBDB 5G04B 1DVPA 2C2LA 2AN6A 2VNFA 3O33A 4AYCB 3RPGB 3M62A 4GNEA 5C11A 2LGVA 2JMJA 4X3GA 5H1VA 3C5KA 2KU3A 3ZVZB 3KV5A 1X4UA 1MBMA 3T7LA 2RR4A 3C6WA 3HCSA 4YAXA 3N9OA 3U5PA 1VD4A 4H9DA 4FIPA 2PUYA 3MDBC 2VPBA 2UZGA 2F42A 3FM8C 4UP5A 3H7HA 3SHBA 3PLWA 3RTRB 3FL2A 2YHNA 3VK6A 2DX8A 3L1ZB 1F62A 4MSXA 4A4CA 5K3QA 2D8UA 4YC9A 3U5OA 2KIZA 2E61A 2XEUA 3HCUA 4AYCA 4B7YC 4YATA 4GNFA 3ZPV1 1Z60A 2DSMA 1LDKC 4P5OB 3IHPA 3KV6A 3KQIA 4OGCA 2XP0A 1WE9A 2YSJA 4Q6FA 2ECIA 3LDYA 1E4UA 4GNGA 3LVRE 2P57A 4LLBA 2M1RA 2DJAA 1JM7A 3FAOA 3L11A 4GNDA 4CCGX 2YURA 3E2DA 3O47A 3DQVR 2LN0A 4WA6A 1VFYA 3Q1DA 4UI9B 3HTKC 1WGMA 2F6JA 4XI1A 2M13A 4R8PK 3N9QA 4YABA 2LAUA 3T9KA 5FB0A 1T1HA 4BHWA 3SOWA 5KH7A 1RMDA 5DINA 2Y1NA 3LRQA 5LKTA 2C2VS 3I2DA 1Z2QA 4IC3A 1FP0A 4QQ4A 4YBTA 4S3OC 3M63A 2HYED 4WZ2A 5KH3A 5FEYA 2ZETC 3LVQE 2YSMA 3SUBA 3O36A 1WEUA 2K16A 5B79A 2FD4A 3DDTA 1WENA 3EB6A 3L1XA 2ECNA 2E6RA 2K1JA 1WEVA 2CONA 4GB0A 2VPGA 3T6RA 4LJNA 2YU4A 2ECJA 5AIUA 3KNVA 3EB5A 4O62A 2KWOA 3HCTA 2KYUA 2EXUA 1JM7B 3RPGC 2MNZA 2MA5A 2VJEA 4I7BA 2LGGA 4A0CD 1CHCA 1U6GB 2JUNA 4NN2A 2KKXA 2M85A 2EGPA 3ZYQA 2LGKA 3N9LA 3MHSA 2OXQC 3O35A 4ZUXU 2QJ0A 2JMIA 2YHOA 5LKUA 4WZ0A 2KKYA 2G6QA 2KFTA 2M3HA 2YYRA 5C13A 5TRBA 3KDEC 2H0DB 2G45A 5TABA 2KWKA 5LCWB 2YVRA 4V3KC 2EGMA 5B76A 1X4IA 3DWDA 4I7DA 5B78A 4IC2A 2E6SA 5B8DA 2M6MA 2NAAA 4OGEA 2LGLA 2FUIA 2CSYA 5TDWA 3MHHA 2QICA 2XOZA 5LKXA 2CKLB 4FJCA 5G0FA 2VJEB 2VPEA 4I7CA 3ZVYA 2YQMA 2L43A 1BORA 2YT5A 5D1LB 2L7PA 2RSDA 3ZTGA 2F6NA 1WIMA 3FEHA 3NG2A 3U5NA 4C9ZA 2FUUA 2H0DA 2LDRA 4BBQA 2D8SA 2MUMA 1HYIA 1WEWA 2YREA 3FJUB 4L7XA 2ECTA 4B86C 2MT5A 2LV9A 2K4DA 5AITA 2MD7B 3V43A 2KE1A 2MKEA 2Y1MA 2MIQA 2L75A 4ZQLA 3ZPVE 4CA1A 2VJFB 5D1MB 5SVIB 2VP7A 2KGGA 2CKLA 2MD8C 2L0BA 2JRJA 3N9PA 3M99A 1WEQA 5J3XA 4AP4A 4LK9A 2IQJA 4WZ3B 3FANA 2LXPC 1VYXA 4L58A 1N87A 2VPDA 2LQ6A 5H1TA 5KH9A 4FK5A 2FSAA 3DPLR 4R7EA 3GL6A 3O70A 4W4UA 4O64A 2CSZA 4YBSA 2OWAA 3JUEA 2BAYA 3ZNIA 2ECVA 2EODA 2EA6A 2K17A 2RI7A 4UP0A 2YQLA 2XOCA 4N4FA 3SOUA 5DKAA 2JM3A 3PURA 2HDPA 3M7KA 5TBNA 4AVXA 5JG6A 3LQJA 1WEOA 2L80A 4LKAA 2KWJA 1XWHA 2VJFA 2CRRA 5SVIA 2CT2A 2FFWA 3LQHA 5SVXA 3LQIA 1JOCA 4N3WA 5B77A 1V87A 2KWNA 1G25A
chains in the Genus database with same CATH topology
2KKXA 2MKEA 3MDBC 2FD4A 3DDTA 2JM3A 2YVRA 3E2DA 2EGMA 2XOZA 3FM8C 3LJUX 3O47A 3DWDA 3H7HA 5SVYA 4QQ4A 3M7KA 3PLWA 2CONA 2XOCA 4Z0OA 5SVIB 3Q1DA 1DCQA 2YREA 3FJUB 4OGCA 4Z0RA 4F1PA 2XP0A 2CRRA 2KKYA 4O62A 5SVIA 2RR4A 2M13A 2EXUA 3LDYA 3LVQE 3KDEC 2CSVA 2FFWA 2XOYA 3SUBA 2L7PA 3LVRE 2P57A 5K3QA 5SVXA 2D8UA 2OWAA 2IQJA 3FEHA 4H9DA 3JUEA 2DJAA 2E61A 2LAUA 4OGEA 3T9KA 2JUNA 2B0OE 2CRWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MDB C;  3FM8 C;  3LJU X;  3O47 A;  3DWD A;  1DCQ A;  4F1P A;  2CRR A;  3LVQ E;  3SUB A;  3LVR E;  2P57 A;  2OWA A;  2IQJ A;  3FEH A;  3JUE A;  3T9K A;  2B0O E;  2CRW A; 
#chains in the Genus database with same CATH topology
 2G43 A;  2KGI A;  3GV4 A;  1X4J A;  1WIL A;  3O37 A;  3SOX A;  3N9M A;  3U5M A;  4F52 B;  2ECW A;  2ECG A;  5FB1 A;  4V3L C;  1K2F A;  3PHD A;  4YBM A;  2Y43 A;  5FER A;  5H9M A;  1WES A;  1WEM A;  4ZDT A;  2KRE A;  2KR4 A;  2MA6 A;  5D1K B;  3O34 A;  4YAD A;  5LKZ A;  4MVT A;  4PPE A;  5EYA F;  4FO9 A;  3LJU X;  2I50 A;  3PUQ A;  4Z0O A;  4LAD B;  4A49 A;  1DCQ A;  5G05 B;  4R2Y A;  4QF3 A;  3QZV A;  3N9N A;  4F1P A;  3O7A A;  2L5U A;  2PNX A;  5I3L A;  1HYJ A;  2CSV A;  2JMD A;  2XOY A;  2XB1 A;  4S3O B;  1MM2 A;  1WFK A;  4QF2 A;  5H1U A;  2LXH C;  2YUC A;  4TKP B;  4PTB A;  2B0O E;  2CRW A;  1WEP A;  4Z0R A;  1WEE A;  4AUQ B;  5B75 A;  1FBV A;  1MM3 A;  2IDA A;  5TDR A;  5SVY A;  2LRI C;  1IYM A;  2MNY A;  4A4B A;  2YW8 A;  2QIZ A;  1LDJ B;  1Z6U A;  3ASL A;  1ZBD B;  5G04 B;  1DVP A;  2C2L A;  2AN6 A;  2VNF A;  3O33 A;  4AYC B;  3RPG B;  3M62 A;  4GNE A;  5C11 A;  2LGV A;  2JMJ A;  4X3G A;  5H1V A;  3C5K A;  2KU3 A;  3ZVZ B;  3KV5 A;  1X4U A;  1MBM A;  3T7L A;  2RR4 A;  3C6W A;  3HCS A;  4YAX A;  3N9O A;  3U5P A;  1VD4 A;  4H9D A;  4FIP A;  2PUY A;  3MDB C;  2VPB A;  2UZG A;  2F42 A;  3FM8 C;  4UP5 A;  3H7H A;  3SHB A;  3PLW A;  3RTR B;  3FL2 A;  2YHN A;  3VK6 A;  2DX8 A;  3L1Z B;  1F62 A;  4MSX A;  4A4C A;  5K3Q A;  2D8U A;  4YC9 A;  3U5O A;  2KIZ A;  2E61 A;  2XEU A;  3HCU A;  4AYC A;  4B7Y C;  4YAT A;  4GNF A;  3ZPV 1;  1Z60 A;  2DSM A;  1LDK C;  4P5O B;  3IHP A;  3KV6 A;  3KQI A;  4OGC A;  2XP0 A;  1WE9 A;  2YSJ A;  4Q6F A;  2ECI A;  3LDY A;  1E4U A;  4GNG A;  3LVR E;  2P57 A;  4LLB A;  2M1R A;  2DJA A;  1JM7 A;  3FAO A;  3L11 A;  4GND A;  4CCG X;  2YUR A;  3E2D A;  3O47 A;  3DQV R;  2LN0 A;  4WA6 A;  1VFY A;  3Q1D A;  4UI9 B;  3HTK C;  1WGM A;  2F6J A;  4XI1 A;  2M13 A;  4R8P K;  3N9Q A;  4YAB A;  2LAU A;  3T9K A;  5FB0 A;  1T1H A;  4BHW A;  3SOW A;  5KH7 A;  1RMD A;  5DIN A;  2Y1N A;  3LRQ A;  5LKT A;  2C2V S;  3I2D A;  1Z2Q A;  4IC3 A;  1FP0 A;  4QQ4 A;  4YBT A;  4S3O C;  3M63 A;  2HYE D;  4WZ2 A;  5KH3 A;  5FEY A;  2ZET C;  3LVQ E;  2YSM A;  3SUB A;  3O36 A;  1WEU A;  2K16 A;  5B79 A;  2FD4 A;  3DDT A;  1WEN A;  3EB6 A;  3L1X A;  2ECN A;  2E6R A;  2K1J A;  1WEV A;  2CON A;  4GB0 A;  2VPG A;  3T6R A;  4LJN A;  2YU4 A;  2ECJ A;  5AIU A;  3KNV A;  3EB5 A;  4O62 A;  2KWO A;  3HCT A;  2KYU A;  2EXU A;  1JM7 B;  3RPG C;  2MNZ A;  2MA5 A;  2VJE A;  4I7B A;  2LGG A;  4A0C D;  1CHC A;  1U6G B;  2JUN A;  4NN2 A;  2KKX A;  2M85 A;  2EGP A;  3ZYQ A;  2LGK A;  3N9L A;  3MHS A;  2OXQ C;  3O35 A;  4ZUX U;  2QJ0 A;  2JMI A;  2YHO A;  5LKU A;  4WZ0 A;  2KKY A;  2G6Q A;  2KFT A;  2M3H A;  2YYR A;  5C13 A;  5TRB A;  3KDE C;  2H0D B;  2G45 A;  5TAB A;  2KWK A;  5LCW B;  2YVR A;  4V3K C;  2EGM A;  5B76 A;  1X4I A;  3DWD A;  4I7D A;  5B78 A;  4IC2 A;  2E6S A;  5B8D A;  2M6M A;  2NAA A;  4OGE A;  2LGL A;  2FUI A;  2CSY A;  5TDW A;  3MHH A;  2QIC A;  2XOZ A;  5LKX A;  2CKL B;  4FJC A;  5G0F A;  2VJE B;  2VPE A;  4I7C A;  3ZVY A;  2YQM A;  2L43 A;  1BOR A;  2YT5 A;  5D1L B;  2L7P A;  2RSD A;  3ZTG A;  2F6N A;  1WIM A;  3FEH A;  3NG2 A;  3U5N A;  4C9Z A;  2FUU A;  2H0D A;  2LDR A;  4BBQ A;  2D8S A;  2MUM A;  1HYI A;  1WEW A;  2YRE A;  3FJU B;  4L7X A;  2ECT A;  4B86 C;  2MT5 A;  2LV9 A;  2K4D A;  5AIT A;  2MD7 B;  3V43 A;  2KE1 A;  2MKE A;  2Y1M A;  2MIQ A;  2L75 A;  4ZQL A;  3ZPV E;  4CA1 A;  2VJF B;  5D1M B;  5SVI B;  2VP7 A;  2KGG A;  2CKL A;  2MD8 C;  2L0B A;  2JRJ A;  3N9P A;  3M99 A;  1WEQ A;  5J3X A;  4AP4 A;  4LK9 A;  2IQJ A;  4WZ3 B;  3FAN A;  2LXP C;  1VYX A;  4L58 A;  1N87 A;  2VPD A;  2LQ6 A;  5H1T A;  5KH9 A;  4FK5 A;  2FSA A;  3DPL R;  4R7E A;  3GL6 A;  3O70 A;  4W4U A;  4O64 A;  2CSZ A;  4YBS A;  2OWA A;  3JUE A;  2BAY A;  3ZNI A;  2ECV A;  2EOD A;  2EA6 A;  2K17 A;  2RI7 A;  4UP0 A;  2YQL A;  2XOC A;  4N4F A;  3SOU A;  5DKA A;  2JM3 A;  3PUR A;  2HDP A;  3M7K A;  5TBN A;  4AVX A;  5JG6 A;  3LQJ A;  1WEO A;  2L80 A;  4LKA A;  2KWJ A;  1XWH A;  2VJF A;  2CRR A;  5SVI A;  2CT2 A;  2FFW A;  3LQH A;  5SVX A;  3LQI A;  1JOC A;  4N3W A;  5B77 A;  1V87 A;  2KWN A;  1G25 A; 
#chains in the Genus database with same CATH homology
 2KKX A;  2MKE A;  3MDB C;  2FD4 A;  3DDT A;  2JM3 A;  2YVR A;  3E2D A;  2EGM A;  2XOZ A;  3FM8 C;  3LJU X;  3O47 A;  3DWD A;  3H7H A;  5SVY A;  4QQ4 A;  3M7K A;  3PLW A;  2CON A;  2XOC A;  4Z0O A;  5SVI B;  3Q1D A;  1DCQ A;  2YRE A;  3FJU B;  4OGC A;  4Z0R A;  4F1P A;  2XP0 A;  2CRR A;  2KKY A;  4O62 A;  5SVI A;  2RR4 A;  2M13 A;  2EXU A;  3LDY A;  3LVQ E;  3KDE C;  2CSV A;  2FFW A;  2XOY A;  3SUB A;  2L7P A;  3LVR E;  2P57 A;  5K3Q A;  5SVX A;  2D8U A;  2OWA A;  2IQJ A;  3FEH A;  4H9D A;  3JUE A;  2DJA A;  2E61 A;  2LAU A;  4OGE A;  3T9K A;  2JUN A;  2B0O E;  2CRW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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