4O62A

Cw-type zinc finger of zcwpw2 in complex with the amino terminus of histone h3
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
56
structure length
56
Chain Sequence
ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Family-wide Characterization of Histone Binding Abilities of Human CW Domain-containing Proteins.
pubmed doi rcsb
molecule keywords Zinc finger CW-type PWWP domain protein 2
source organism Homo sapiens
molecule tags Metal/dna binding protein
total genus 10
structure length 56
sequence length 56
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07496 zf-CW CW-type Zinc Finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.100 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 4o62A00
5SVIA 4Z0RA 5SVIB 2RR4A 4O62A 5SVYA 4Z0OA 2L7PA 4QQ4A 5SVXA 2E61A
chains in the Genus database with same CATH superfamily
2F6NA 2KR4A 1IYMA 2KWJA 1Z6UA 5FEYA 2H0DA 3N9NA 2L5UA 1WEPA 2KIZA 2LGLA 2CRRA 2RR4A 4AUQB 2E6SA 2KGGA 4H9DA 3KV6A 3ZPVE 4O62A 5D1KB 4R7EA 2DX8A 2MKEA 4P5OB 2KFTA 3C6WA 2XOZA 2YVRA 4Z0OA 4R8PK 4F52B 1F62A 2YUCA 3SUBA 2LN0A 3NG2A 1E4UA 4WZ2A 3E2DA 2OWAA 3KV5A 5G04B 3O37A 2ECIA 4LK9A 5H1TA 2L80A 5B8DA 1X4IA 4BBQA 5I3LA 3U5MA 3H7HA 3N9LA 4LJNA 1WEWA 4BHWA 2M6MA 4QQ4A 2C2VS 4YBMA 4FK5A 2XOCA 2EGMA 4ZQLA 4L7XA 4MVTA 3SOXA 2CKLB 2ECVA 2KGIA 2JMIA 2VJEA 4PTBA 3HTKC 5J3XA 3HCUA 2MT5A 4UP0A 2EXUA 1HYJA 1VFYA 5B79A 3FL2A 2LDRA 4LLBA 4W4UA 3ZYQA 1ZBDB 1WE9A 2VJFA 2XEUA 2VPEA 4XI1A 4I7BA 2ZETC 5G0FA 1MBMA 4I7DA 4YBTA 3FEHA 4A0CD 2KYUA 2KKYA 1JM7B 1HYIA 2F42A 2YQMA 2JRJA 1WFKA 5K3QA 3M99A 2AN6A 1MM2A 5DINA 1VD4A 1XWHA 2YSJA 3GL6A 1X4JA 3ASLA 2KKXA 2G6QA 4LKAA 2NAAA 4X3GA 2LAUA 2JUNA 5C11A 3MDBC 3C5KA 3LQIA 3RTRB 3DWDA 2I50A 3U5NA 4Z0RA 2LGKA 2M85A 3M7KA 2MNZA 2PNXA 4PPEA 4V3KC 1K2FA 1WENA 3DDTA 2MUMA 2YSMA 2KWKA 2KE1A 5D1MB 4AYCB 2M3HA 2HDPA 1WIMA 5FB0A 4ZDTA 2MNYA 2ECNA 1DVPA 3LDYA 1JOCA 2K16A 3N9PA 1MM3A 2D8UA 5H1VA 2VP7A 5TRBA 5JG6A 5SVIB 4NN2A 4IC2A 2VPGA 2XB1A 3U5OA 1WEVA 2Y1NA 3T6RA 2M13A 2F6JA 2LGGA 3LVQE 2YT5A 4I7CA 2CT2A 3LRQA 2LXPC 3SHBA 3LVRE 3SOUA 2LGVA 4WZ0A 2YHNA 3PUQA 4AP4A 5D1LB 4N4FA 1WILA 4GNDA 3FJUB 4YATA 5B77A 3I2DA 2YW8A 1WEEA 5LKTA 2QJ0A 2Y43A 2YREA 4A4BA 3KDEC 3DPLR 2QICA 2DJAA 1DCQA 5TDRA 2E6RA 5FERA 2LQ6A 3PLWA 5LKUA 1U6GB 2IQJA 4YABA 4QF3A 3O33A 2KWNA 4FJCA 3T9KA 2P57A 3Q1DA 3ZVZB 3N9OA 3DQVR 2EGPA 2YURA 2C2LA 1LDKC 4N3WA 2FUIA 3GV4A 3ZPV1 3SOWA 5B75A 3MHHA 3FANA 3PHDA 2LRIC 2HYED 3LJUX 2OXQC 3L1XA 4ZUXU 2KWOA 2RI7A 3PURA 3KNVA 1V87A 4MSXA 5LCWB 2MD8C 5AITA 4V3LC 3ZTGA 5AIUA 3O36A 3T7LA 2MD7B 3M62A 5LKXA 3ZNIA 2EODA 3KQIA 2DSMA 1X4UA 3FAOA 5SVYA 4OGCA 2CSVA 5LKZA 2VJEB 4GNGA 3O7AA 5DKAA 4LADB 3N9QA 2UZGA 4WA6A 2VJFB 5KH3A 4YADA 4YAXA 3JUEA 2VPDA 4S3OC 4A49A 3M63A 2FD4A 2MA5A 1Z60A 2CONA 2JMJA 3L1ZB 3N9MA 2IDAA 1WEOA 3HCSA 3O34A 1WEQA 2MA6A 3IHPA 2KREA 3LQJA 4UI9B 2FSAA 4FO9A 2M1RA 3O47A 2FUUA 2CSYA 2XP0A 4F1PA 4Q6FA 4YC9A 1VYXA 2BAYA 4QF2A 3LQHA 5B76A 2YU4A 5FB1A 2L7PA 4B7YC 2PUYA 2G45A 2RSDA 4GB0A 2ECGA 2H0DB 4C9ZA 1FBVA 1N87A 4AVXA 2CSZA 4L58A 5B78A 5C13A 2CKLA 4GNFA 2YHOA 2KU3A 2QIZA 5TABA 2MIQA 2LXHC 3EB5A 4TKPB 2YYRA 2K1JA 4S3OB 2L0BA 3QZVA 3V43A 3O35A 4OGEA 3U5PA 1Z2QA 5H9MA 4R2YA 5H1UA 2YQLA 5KH7A 2ECTA 2K4DA 2VPBA 5SVXA 1JM7A 2ECJA 3RPGC 2LV9A 1FP0A 2B0OE 3MHSA 2EA6A 4UP5A 4CCGX 2K17A 2ECWA 1WGMA 2L75A 1BORA 5KH9A 4GNEA 3L11A 2E61A 3VK6A 3HCTA 1WEMA 3FM8C 2CRWA 4IC3A 2Y1MA 4YBSA 1WEUA 5TBNA 4O64A 2XOYA 4AYCA 2FFWA 1RMDA 2JM3A 1LDJB 4CA1A 5EYAF 1T1HA 2VNFA 1G25A 2G43A 5TDWA 4B86C 5SVIA 1WESA 4A4CA 4FIPA 1CHCA 5G05B 2L43A 2D8SA 3ZVYA 4WZ3B 3O70A 3RPGB 2JMDA 3EB6A
chains in the Genus database with same CATH topology
2FFWA 2MKEA 3FJUB 4Z0RA 5SVIB 3H7HA 3M7KA 2JM3A 2FD4A 2XOZA 5K3QA 4OGCA 2YVRA 2YREA 4Z0OA 2CONA 5SVYA 3KDEC 2CSVA 4QQ4A 5SVXA 2E61A 2DJAA 3LJUX 1DCQA 2M13A 2CRWA 3DDTA 3FM8C 3LVQE 2L7PA 2XOCA 2EGMA 3SUBA 2KKXA 3PLWA 5SVIA 3E2DA 2CRRA 2IQJA 2B0OE 2LAUA 2RR4A 2OWAA 3FEHA 2JUNA 3LVRE 4OGEA 4H9DA 3MDBC 3T9KA 2KKYA 2P57A 3Q1DA 3LDYA 2XOYA 4O62A 2D8UA 3JUEA 3O47A 3DWDA 2EXUA 2XP0A 4F1PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5SVI A;  4Z0R A;  5SVI B;  2RR4 A;  4O62 A;  5SVY A;  4Z0O A;  2L7P A;  4QQ4 A;  5SVX A;  2E61 A; 
#chains in the Genus database with same CATH topology
 2F6N A;  2KR4 A;  1IYM A;  2KWJ A;  1Z6U A;  5FEY A;  2H0D A;  3N9N A;  2L5U A;  1WEP A;  2KIZ A;  2LGL A;  2CRR A;  2RR4 A;  4AUQ B;  2E6S A;  2KGG A;  4H9D A;  3KV6 A;  3ZPV E;  4O62 A;  5D1K B;  4R7E A;  2DX8 A;  2MKE A;  4P5O B;  2KFT A;  3C6W A;  2XOZ A;  2YVR A;  4Z0O A;  4R8P K;  4F52 B;  1F62 A;  2YUC A;  3SUB A;  2LN0 A;  3NG2 A;  1E4U A;  4WZ2 A;  3E2D A;  2OWA A;  3KV5 A;  5G04 B;  3O37 A;  2ECI A;  4LK9 A;  5H1T A;  2L80 A;  5B8D A;  1X4I A;  4BBQ A;  5I3L A;  3U5M A;  3H7H A;  3N9L A;  4LJN A;  1WEW A;  4BHW A;  2M6M A;  4QQ4 A;  2C2V S;  4YBM A;  4FK5 A;  2XOC A;  2EGM A;  4ZQL A;  4L7X A;  4MVT A;  3SOX A;  2CKL B;  2ECV A;  2KGI A;  2JMI A;  2VJE A;  4PTB A;  3HTK C;  5J3X A;  3HCU A;  2MT5 A;  4UP0 A;  2EXU A;  1HYJ A;  1VFY A;  5B79 A;  3FL2 A;  2LDR A;  4LLB A;  4W4U A;  3ZYQ A;  1ZBD B;  1WE9 A;  2VJF A;  2XEU A;  2VPE A;  4XI1 A;  4I7B A;  2ZET C;  5G0F A;  1MBM A;  4I7D A;  4YBT A;  3FEH A;  4A0C D;  2KYU A;  2KKY A;  1JM7 B;  1HYI A;  2F42 A;  2YQM A;  2JRJ A;  1WFK A;  5K3Q A;  3M99 A;  2AN6 A;  1MM2 A;  5DIN A;  1VD4 A;  1XWH A;  2YSJ A;  3GL6 A;  1X4J A;  3ASL A;  2KKX A;  2G6Q A;  4LKA A;  2NAA A;  4X3G A;  2LAU A;  2JUN A;  5C11 A;  3MDB C;  3C5K A;  3LQI A;  3RTR B;  3DWD A;  2I50 A;  3U5N A;  4Z0R A;  2LGK A;  2M85 A;  3M7K A;  2MNZ A;  2PNX A;  4PPE A;  4V3K C;  1K2F A;  1WEN A;  3DDT A;  2MUM A;  2YSM A;  2KWK A;  2KE1 A;  5D1M B;  4AYC B;  2M3H A;  2HDP A;  1WIM A;  5FB0 A;  4ZDT A;  2MNY A;  2ECN A;  1DVP A;  3LDY A;  1JOC A;  2K16 A;  3N9P A;  1MM3 A;  2D8U A;  5H1V A;  2VP7 A;  5TRB A;  5JG6 A;  5SVI B;  4NN2 A;  4IC2 A;  2VPG A;  2XB1 A;  3U5O A;  1WEV A;  2Y1N A;  3T6R A;  2M13 A;  2F6J A;  2LGG A;  3LVQ E;  2YT5 A;  4I7C A;  2CT2 A;  3LRQ A;  2LXP C;  3SHB A;  3LVR E;  3SOU A;  2LGV A;  4WZ0 A;  2YHN A;  3PUQ A;  4AP4 A;  5D1L B;  4N4F A;  1WIL A;  4GND A;  3FJU B;  4YAT A;  5B77 A;  3I2D A;  2YW8 A;  1WEE A;  5LKT A;  2QJ0 A;  2Y43 A;  2YRE A;  4A4B A;  3KDE C;  3DPL R;  2QIC A;  2DJA A;  1DCQ A;  5TDR A;  2E6R A;  5FER A;  2LQ6 A;  3PLW A;  5LKU A;  1U6G B;  2IQJ A;  4YAB A;  4QF3 A;  3O33 A;  2KWN A;  4FJC A;  3T9K A;  2P57 A;  3Q1D A;  3ZVZ B;  3N9O A;  3DQV R;  2EGP A;  2YUR A;  2C2L A;  1LDK C;  4N3W A;  2FUI A;  3GV4 A;  3ZPV 1;  3SOW A;  5B75 A;  3MHH A;  3FAN A;  3PHD A;  2LRI C;  2HYE D;  3LJU X;  2OXQ C;  3L1X A;  4ZUX U;  2KWO A;  2RI7 A;  3PUR A;  3KNV A;  1V87 A;  4MSX A;  5LCW B;  2MD8 C;  5AIT A;  4V3L C;  3ZTG A;  5AIU A;  3O36 A;  3T7L A;  2MD7 B;  3M62 A;  5LKX A;  3ZNI A;  2EOD A;  3KQI A;  2DSM A;  1X4U A;  3FAO A;  5SVY A;  4OGC A;  2CSV A;  5LKZ A;  2VJE B;  4GNG A;  3O7A A;  5DKA A;  4LAD B;  3N9Q A;  2UZG A;  4WA6 A;  2VJF B;  5KH3 A;  4YAD A;  4YAX A;  3JUE A;  2VPD A;  4S3O C;  4A49 A;  3M63 A;  2FD4 A;  2MA5 A;  1Z60 A;  2CON A;  2JMJ A;  3L1Z B;  3N9M A;  2IDA A;  1WEO A;  3HCS A;  3O34 A;  1WEQ A;  2MA6 A;  3IHP A;  2KRE A;  3LQJ A;  4UI9 B;  2FSA A;  4FO9 A;  2M1R A;  3O47 A;  2FUU A;  2CSY A;  2XP0 A;  4F1P A;  4Q6F A;  4YC9 A;  1VYX A;  2BAY A;  4QF2 A;  3LQH A;  5B76 A;  2YU4 A;  5FB1 A;  2L7P A;  4B7Y C;  2PUY A;  2G45 A;  2RSD A;  4GB0 A;  2ECG A;  2H0D B;  4C9Z A;  1FBV A;  1N87 A;  4AVX A;  2CSZ A;  4L58 A;  5B78 A;  5C13 A;  2CKL A;  4GNF A;  2YHO A;  2KU3 A;  2QIZ A;  5TAB A;  2MIQ A;  2LXH C;  3EB5 A;  4TKP B;  2YYR A;  2K1J A;  4S3O B;  2L0B A;  3QZV A;  3V43 A;  3O35 A;  4OGE A;  3U5P A;  1Z2Q A;  5H9M A;  4R2Y A;  5H1U A;  2YQL A;  5KH7 A;  2ECT A;  2K4D A;  2VPB A;  5SVX A;  1JM7 A;  2ECJ A;  3RPG C;  2LV9 A;  1FP0 A;  2B0O E;  3MHS A;  2EA6 A;  4UP5 A;  4CCG X;  2K17 A;  2ECW A;  1WGM A;  2L75 A;  1BOR A;  5KH9 A;  4GNE A;  3L11 A;  2E61 A;  3VK6 A;  3HCT A;  1WEM A;  3FM8 C;  2CRW A;  4IC3 A;  2Y1M A;  4YBS A;  1WEU A;  5TBN A;  4O64 A;  2XOY A;  4AYC A;  2FFW A;  1RMD A;  2JM3 A;  1LDJ B;  4CA1 A;  5EYA F;  1T1H A;  2VNF A;  1G25 A;  2G43 A;  5TDW A;  4B86 C;  5SVI A;  1WES A;  4A4C A;  4FIP A;  1CHC A;  5G05 B;  2L43 A;  2D8S A;  3ZVY A;  4WZ3 B;  3O70 A;  3RPG B;  2JMD A;  3EB6 A; 
#chains in the Genus database with same CATH homology
 2FFW A;  2MKE A;  3FJU B;  4Z0R A;  5SVI B;  3H7H A;  3M7K A;  2JM3 A;  2FD4 A;  2XOZ A;  5K3Q A;  4OGC A;  2YVR A;  2YRE A;  4Z0O A;  2CON A;  5SVY A;  3KDE C;  2CSV A;  4QQ4 A;  5SVX A;  2E61 A;  2DJA A;  3LJU X;  1DCQ A;  2M13 A;  2CRW A;  3DDT A;  3FM8 C;  3LVQ E;  2L7P A;  2XOC A;  2EGM A;  3SUB A;  2KKX A;  3PLW A;  5SVI A;  3E2D A;  2CRR A;  2IQJ A;  2B0O E;  2LAU A;  2RR4 A;  2OWA A;  3FEH A;  2JUN A;  3LVR E;  4OGE A;  4H9D A;  3MDB C;  3T9K A;  2KKY A;  2P57 A;  3Q1D A;  3LDY A;  2XOY A;  4O62 A;  2D8U A;  3JUE A;  3O47 A;  3DWD A;  2EXU A;  2XP0 A;  4F1P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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