4H9DA

Crystal structure of mn-dependent gme hnh nicking endonuclease from geobacter metallireducens gs-15, northeast structural genomics consortium (nesg) target gmr87
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
97
structure length
97
Chain Sequence
MNYFIVEVSEQEVKREKEKARELRRSQWWKNRIARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVEWEEYLDSLES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target GmR87
rcsb
molecule tags Hydrolase
molecule keywords HNH endonuclease
total genus 27
structure length 97
sequence length 97
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14279 HNH_5 HNH endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.60 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 4h9dA00
4H9DA 4OGCA 4OGEA
chains in the Genus database with same CATH superfamily
3DDTA 2Y1NA 2KKYA 5LKZA 5B77A 1X4IA 1WILA 2EGPA 3ZPVE 2UZGA 2K4DA 2L0BA 2CONA 4GNDA 2LXHC 2B0OE 4YAXA 1N87A 4L7XA 1VFYA 2MIQA 2MD7B 3IHPA 1Z60A 2E61A 3FJUB 5TDRA 2FD4A 2RSDA 2CSVA 3RTRB 1WENA 2CRRA 5TBNA 3O70A 2I50A 2Y1MA 2BAYA 2VPDA 4Q6FA 4WZ0A 4GNGA 2EA6A 4CA1A 2YHNA 2C2LA 4GB0A 2M6MA 2LXPC 3RPGB 4YC9A 3KQIA 1RMDA 5I3LA 3N9OA 2FFWA 3SOUA 2HDPA 5H1UA 2KWJA 2K16A 3KDEC 3NG2A 3N9NA 5SVIA 3PHDA 2KU3A 2M3HA 2VJEB 2DSMA 2XEUA 2KGIA 3LQJA 5D1LB 1HYJA 5LCWB 2XP0A 4LLBA 4R8PK 3O36A 4ZDTA 3N9LA 4WA6A 5DKAA 5B8DA 4A4BA 4AYCA 2VPGA 1ZBDB 3DPLR 4A49A 3SUBA 1WEVA 2M85A 2KGGA 4LKAA 2VPBA 2RR4A 3RPGC 3M7KA 3ZTGA 2YQMA 2XOYA 3QZVA 2LDRA 3T9KA 3U5PA 4I7BA 2YYRA 3V43A 5SVYA 2EXUA 1HYIA 1Z2QA 5KH9A 5C11A 2E6RA 3MDBC 3Q1DA 2L7PA 2DJAA 3SOWA 5J3XA 4QF3A 3N9MA 3U5MA 5LKTA 1JM7A 3O35A 2H0DA 3C5KA 1U6GB 5H9MA 2JMJA 4IC3A 5TABA 2QICA 2LAUA 4I7CA 2OWAA 2YUCA 4YABA 3ZVZB 2YQLA 5KH7A 2MNYA 3MHSA 5SVXA 3O47A 3JUEA 4N3WA 2LV9A 2LN0A 1JOCA 2H0DB 1JM7B 3GV4A 2KWNA 3EB5A 2XOZA 2MA5A 2MKEA 2D8SA 4UP5A 1F62A 2L80A 3HCTA 4LJNA 4OGEA 2YREA 3O33A 1XWHA 1BORA 3ZYQA 2YURA 2K17A 5G04B 3N9QA 5FB0A 4NN2A 3M63A 4QQ4A 4O62A 4O64A 4BBQA 2VPEA 5B78A 2JM3A 4YADA 1VD4A 2LRIC 5LKXA 5G0FA 2F42A 4AYCB 4LK9A 2G43A 3O7AA 4LADB 2JMIA 2ECTA 3LRQA 4IC2A 1LDKC 2CSZA 4R2YA 2G6QA 3GL6A 3O34A 1MM2A 2MT5A 3M99A 4OGCA 3VK6A 2VJEA 5SVIB 3L1XA 4UI9B 2L43A 3LQHA 4F52B 5LKUA 2YSJA 2MNZA 3KV5A 1WESA 3C6WA 4S3OB 5FERA 4GNEA 3M62A 2KR4A 2K1JA 3SHBA 2ECGA 2KKXA 1MBMA 5EYAF 4TKPB 3FEHA 3LVQE 1CHCA 5AIUA 3FANA 5B76A 4MSXA 1DCQA 2Y43A 3PURA 5B75A 4X3GA 2KFTA 4WZ3B 2ECJA 3L11A 3EB6A 1WEEA 4R7EA 2KWKA 4UP0A 1FP0A 2FUUA 2LGVA 4XI1A 4AVXA 1WEPA 2ECIA 3ASLA 2PUYA 5H1TA 2FUIA 5FEYA 4YBSA 4I7DA 5TRBA 4YATA 1WGMA 5AITA 4GNFA 1WE9A 4PTBA 4B86C 3U5OA 1WEUA 2PNXA 4A0CD 4BHWA 4ZUXU 2RI7A 2XOCA 2DX8A 5H1VA 2QJ0A 2M13A 3LQIA 1WEOA 1IYMA 1WEQA 4V3LC 3HCSA 2YW8A 3O37A 3MHHA 4V3KC 4WZ2A 2HYED 2KWOA 2G45A 2L5UA 4H9DA 4S3OC 3ZNIA 4MVTA 4FO9A 1DVPA 1MM3A 2YVRA 3LVRE 5FB1A 2LQ6A 2P57A 2MA6A 2F6JA 5JG6A 3LDYA 5B79A 2CSYA 2CKLA 4PPEA 2OXQC 2CT2A 3ZVYA 4YBMA 3T7LA 2F6NA 4FJCA 1K2FA 4FIPA 1X4UA 2M1RA 3T6RA 3FAOA 5G05B 3ZPV1 2YT5A 3KV6A 4AUQB 2D8UA 4FK5A 2VJFA 3HCUA 2YHOA 4AP4A 1E4UA 2MD8C 4P5OB 1WIMA 2XB1A 2E6SA 2EODA 2LGGA 1G25A 4B7YC 1WFKA 5C13A 2AN6A 2ECNA 2VJFB 4L58A 2ZETC 2MUMA 3PUQA 3SOXA 2LGKA 4YBTA 1X4JA 4Z0OA 2KIZA 3PLWA 4C9ZA 2VNFA 2YSMA 5K3QA 3L1ZB 5D1KB 2IDAA 2LGLA 2L75A 1WEWA 2CRWA 3FL2A 2KE1A 4Z0RA 2CKLB 3DWDA 1FBVA 3I2DA 2ECVA 2KYUA 2JUNA 2JMDA 2YU4A 2QIZA 5TDWA 1WEMA 4N4FA 2EGMA 3KNVA 2NAAA 1Z6UA 4ZQLA 4F1PA 2IQJA 3H7HA 2VP7A 3FM8C 2KREA 3HTKC 4QF2A 5DINA 1VYXA 1T1HA 2ECWA 5KH3A 4CCGX 3U5NA 1V87A 5D1MB 2JRJA 2FSAA 3E2DA 3DQVR 1LDJB 4W4UA 4A4CA 3LJUX 3N9PA 2C2VS
chains in the Genus database with same CATH topology
3PLWA 5K3QA 3DDTA 2RR4A 4F1PA 4OGEA 2XP0A 2KKYA 3LDYA 3M7KA 2IQJA 2YREA 2LAUA 2XOYA 3H7HA 3FM8C 3T9KA 2OWAA 2CRWA 2E61A 5SVYA 2EXUA 3FJUB 4H9DA 4Z0RA 5SVXA 3O47A 3DWDA 2CONA 2KKXA 2FD4A 3JUEA 3MDBC 2CSVA 3Q1DA 4OGCA 2JUNA 2L7PA 4QQ4A 2DJAA 4O62A 2B0OE 2XOCA 2YVRA 3FEHA 5SVIB 3LVQE 3E2DA 3LVRE 2FFWA 2M13A 2JM3A 2CRRA 2P57A 3SUBA 3LJUX 2XOZA 1DCQA 3KDEC 2D8UA 5SVIA 4Z0OA 2EGMA 2MKEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H9D A;  4OGC A;  4OGE A; 
#chains in the Genus database with same CATH topology
 3DDT A;  2Y1N A;  2KKY A;  5LKZ A;  5B77 A;  1X4I A;  1WIL A;  2EGP A;  3ZPV E;  2UZG A;  2K4D A;  2L0B A;  2CON A;  4GND A;  2LXH C;  2B0O E;  4YAX A;  1N87 A;  4L7X A;  1VFY A;  2MIQ A;  2MD7 B;  3IHP A;  1Z60 A;  2E61 A;  3FJU B;  5TDR A;  2FD4 A;  2RSD A;  2CSV A;  3RTR B;  1WEN A;  2CRR A;  5TBN A;  3O70 A;  2I50 A;  2Y1M A;  2BAY A;  2VPD A;  4Q6F A;  4WZ0 A;  4GNG A;  2EA6 A;  4CA1 A;  2YHN A;  2C2L A;  4GB0 A;  2M6M A;  2LXP C;  3RPG B;  4YC9 A;  3KQI A;  1RMD A;  5I3L A;  3N9O A;  2FFW A;  3SOU A;  2HDP A;  5H1U A;  2KWJ A;  2K16 A;  3KDE C;  3NG2 A;  3N9N A;  5SVI A;  3PHD A;  2KU3 A;  2M3H A;  2VJE B;  2DSM A;  2XEU A;  2KGI A;  3LQJ A;  5D1L B;  1HYJ A;  5LCW B;  2XP0 A;  4LLB A;  4R8P K;  3O36 A;  4ZDT A;  3N9L A;  4WA6 A;  5DKA A;  5B8D A;  4A4B A;  4AYC A;  2VPG A;  1ZBD B;  3DPL R;  4A49 A;  3SUB A;  1WEV A;  2M85 A;  2KGG A;  4LKA A;  2VPB A;  2RR4 A;  3RPG C;  3M7K A;  3ZTG A;  2YQM A;  2XOY A;  3QZV A;  2LDR A;  3T9K A;  3U5P A;  4I7B A;  2YYR A;  3V43 A;  5SVY A;  2EXU A;  1HYI A;  1Z2Q A;  5KH9 A;  5C11 A;  2E6R A;  3MDB C;  3Q1D A;  2L7P A;  2DJA A;  3SOW A;  5J3X A;  4QF3 A;  3N9M A;  3U5M A;  5LKT A;  1JM7 A;  3O35 A;  2H0D A;  3C5K A;  1U6G B;  5H9M A;  2JMJ A;  4IC3 A;  5TAB A;  2QIC A;  2LAU A;  4I7C A;  2OWA A;  2YUC A;  4YAB A;  3ZVZ B;  2YQL A;  5KH7 A;  2MNY A;  3MHS A;  5SVX A;  3O47 A;  3JUE A;  4N3W A;  2LV9 A;  2LN0 A;  1JOC A;  2H0D B;  1JM7 B;  3GV4 A;  2KWN A;  3EB5 A;  2XOZ A;  2MA5 A;  2MKE A;  2D8S A;  4UP5 A;  1F62 A;  2L80 A;  3HCT A;  4LJN A;  4OGE A;  2YRE A;  3O33 A;  1XWH A;  1BOR A;  3ZYQ A;  2YUR A;  2K17 A;  5G04 B;  3N9Q A;  5FB0 A;  4NN2 A;  3M63 A;  4QQ4 A;  4O62 A;  4O64 A;  4BBQ A;  2VPE A;  5B78 A;  2JM3 A;  4YAD A;  1VD4 A;  2LRI C;  5LKX A;  5G0F A;  2F42 A;  4AYC B;  4LK9 A;  2G43 A;  3O7A A;  4LAD B;  2JMI A;  2ECT A;  3LRQ A;  4IC2 A;  1LDK C;  2CSZ A;  4R2Y A;  2G6Q A;  3GL6 A;  3O34 A;  1MM2 A;  2MT5 A;  3M99 A;  4OGC A;  3VK6 A;  2VJE A;  5SVI B;  3L1X A;  4UI9 B;  2L43 A;  3LQH A;  4F52 B;  5LKU A;  2YSJ A;  2MNZ A;  3KV5 A;  1WES A;  3C6W A;  4S3O B;  5FER A;  4GNE A;  3M62 A;  2KR4 A;  2K1J A;  3SHB A;  2ECG A;  2KKX A;  1MBM A;  5EYA F;  4TKP B;  3FEH A;  3LVQ E;  1CHC A;  5AIU A;  3FAN A;  5B76 A;  4MSX A;  1DCQ A;  2Y43 A;  3PUR A;  5B75 A;  4X3G A;  2KFT A;  4WZ3 B;  2ECJ A;  3L11 A;  3EB6 A;  1WEE A;  4R7E A;  2KWK A;  4UP0 A;  1FP0 A;  2FUU A;  2LGV A;  4XI1 A;  4AVX A;  1WEP A;  2ECI A;  3ASL A;  2PUY A;  5H1T A;  2FUI A;  5FEY A;  4YBS A;  4I7D A;  5TRB A;  4YAT A;  1WGM A;  5AIT A;  4GNF A;  1WE9 A;  4PTB A;  4B86 C;  3U5O A;  1WEU A;  2PNX A;  4A0C D;  4BHW A;  4ZUX U;  2RI7 A;  2XOC A;  2DX8 A;  5H1V A;  2QJ0 A;  2M13 A;  3LQI A;  1WEO A;  1IYM A;  1WEQ A;  4V3L C;  3HCS A;  2YW8 A;  3O37 A;  3MHH A;  4V3K C;  4WZ2 A;  2HYE D;  2KWO A;  2G45 A;  2L5U A;  4H9D A;  4S3O C;  3ZNI A;  4MVT A;  4FO9 A;  1DVP A;  1MM3 A;  2YVR A;  3LVR E;  5FB1 A;  2LQ6 A;  2P57 A;  2MA6 A;  2F6J A;  5JG6 A;  3LDY A;  5B79 A;  2CSY A;  2CKL A;  4PPE A;  2OXQ C;  2CT2 A;  3ZVY A;  4YBM A;  3T7L A;  2F6N A;  4FJC A;  1K2F A;  4FIP A;  1X4U A;  2M1R A;  3T6R A;  3FAO A;  5G05 B;  3ZPV 1;  2YT5 A;  3KV6 A;  4AUQ B;  2D8U A;  4FK5 A;  2VJF A;  3HCU A;  2YHO A;  4AP4 A;  1E4U A;  2MD8 C;  4P5O B;  1WIM A;  2XB1 A;  2E6S A;  2EOD A;  2LGG A;  1G25 A;  4B7Y C;  1WFK A;  5C13 A;  2AN6 A;  2ECN A;  2VJF B;  4L58 A;  2ZET C;  2MUM A;  3PUQ A;  3SOX A;  2LGK A;  4YBT A;  1X4J A;  4Z0O A;  2KIZ A;  3PLW A;  4C9Z A;  2VNF A;  2YSM A;  5K3Q A;  3L1Z B;  5D1K B;  2IDA A;  2LGL A;  2L75 A;  1WEW A;  2CRW A;  3FL2 A;  2KE1 A;  4Z0R A;  2CKL B;  3DWD A;  1FBV A;  3I2D A;  2ECV A;  2KYU A;  2JUN A;  2JMD A;  2YU4 A;  2QIZ A;  5TDW A;  1WEM A;  4N4F A;  2EGM A;  3KNV A;  2NAA A;  1Z6U A;  4ZQL A;  4F1P A;  2IQJ A;  3H7H A;  2VP7 A;  3FM8 C;  2KRE A;  3HTK C;  4QF2 A;  5DIN A;  1VYX A;  1T1H A;  2ECW A;  5KH3 A;  4CCG X;  3U5N A;  1V87 A;  5D1M B;  2JRJ A;  2FSA A;  3E2D A;  3DQV R;  1LDJ B;  4W4U A;  4A4C A;  3LJU X;  3N9P A;  2C2V S; 
#chains in the Genus database with same CATH homology
 3PLW A;  5K3Q A;  3DDT A;  2RR4 A;  4F1P A;  4OGE A;  2XP0 A;  2KKY A;  3LDY A;  3M7K A;  2IQJ A;  2YRE A;  2LAU A;  2XOY A;  3H7H A;  3FM8 C;  3T9K A;  2OWA A;  2CRW A;  2E61 A;  5SVY A;  2EXU A;  3FJU B;  4H9D A;  4Z0R A;  5SVX A;  3O47 A;  3DWD A;  2CON A;  2KKX A;  2FD4 A;  3JUE A;  3MDB C;  2CSV A;  3Q1D A;  4OGC A;  2JUN A;  2L7P A;  4QQ4 A;  2DJA A;  4O62 A;  2B0O E;  2XOC A;  2YVR A;  3FEH A;  5SVI B;  3LVQ E;  3E2D A;  3LVR E;  2FFW A;  2M13 A;  2JM3 A;  2CRR A;  2P57 A;  3SUB A;  3LJU X;  2XOZ A;  1DCQ A;  3KDE C;  2D8U A;  5SVI A;  4Z0O A;  2EGM A;  2MKE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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