The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
118
|
structure length |
118
|
Chain Sequence |
b'MGALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the human transcription elongation factor DSIF hSpt4 subunit in complex with the hSpt5 dimerization interface
pubmed doi rcsb |
| molecule keywords |
Transcription elongation factor SPT4
|
| source organism |
Homo sapiens
|
| molecule tags |
Transcription
|
| total genus |
33
|
| structure length |
118
|
| sequence length |
118
|
| ec nomenclature | |
| pdb deposition date | 2009-04-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06093 | Spt4 | Spt4/RpoE2 zinc finger |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Herpes Virus-1 |
#chains in the Genus database with same CATH superfamily 3H7H A; 2EXU A; #chains in the Genus database with same CATH topology 4O62 A; 2K1J A; 5SVI A; 1WIL A; 4B7Y C; 5H1V A; 5D1L B; 2VJF A; 1MBM A; 2EGM A; 2CON A; 1V87 A; 5LKT A; 4AYC B; 1X4I A; 5FB1 A; 4LAD B; 3LQH A; 1K2F A; 3LQJ A; 4I7D A; 2H0D B; 1WES A; 5FB0 A; 1G25 A; 4N4F A; 5H1T A; 2HDP A; 4YBT A; 1VD4 A; 4R2Y A; 2Y1M A; 2Y43 A; 1WEV A; 3GL6 A; 4CA1 A; 2RR4 A; 4AVX A; 1WEU A; 5KH3 A; 4YAT A; 3ZPV 1; 3ZNI A; 2VJE A; 5SVX A; 2ECV A; 3M63 A; 2LV9 A; 1WEP A; 5K3Q A; 3N9O A; 2M13 A; 4WZ2 A; 3PLW A; 2KWK A; 2EGP A; 2VP7 A; 4ZQL A; 5H9M A; 1WGM A; 2K17 A; 2YVR A; 5SVI B; 1WIM A; 2BAY A; 2LXP C; 2MIQ A; 1JM7 B; 2Y1N A; 4L58 A; 4AUQ B; 2YU4 A; 1LDK C; 2XOY A; 3FJU B; 5AIU A; 4Q6F A; 3ASL A; 5TAB A; 2NAA A; 3MHS A; 1VFY A; 3LVQ E; 2KKY A; 2YW8 A; 2KR4 A; 2KYU A; 4LLB A; 4LJN A; 4IC2 A; 3N9L A; 1X4U A; 2KGG A; 4WA6 A; 1HYI A; 3N9N A; 2L75 A; 5AIT A; 4GNG A; 4S3O C; 2CSY A; 3O34 A; 4FO9 A; 4AYC A; 2MD8 C; 1BOR A; 2VPB A; 1Z60 A; 4WZ0 A; 3T6R A; 2ECT A; 2CSV A; 3ZVY A; 2LQ6 A; 4MSX A; 2LGG A; 2PNX A; 4YAD A; 3LVR E; 3M7K A; 2G45 A; 5B79 A; 5LKU A; 3C5K A; 4YAX A; 5JG6 A; 2KKX A; 3N9P A; 2L0B A; 3PHD A; 2MA6 A; 2EXU A; 1FBV A; 4GND A; 2CSZ A; 2XOC A; 2QIZ A; 2ZET C; 4CCG X; 2LGK A; 2DX8 A; 4P5O B; 5LKX A; 5EYA F; 3DQV R; 3HCS A; 1JM7 A; 5G05 B; 2KGI A; 5G04 B; 2B0O E; 2F6N A; 3T9K A; 2L5U A; 2FD4 A; 3LRQ A; 5TDW A; 3RPG B; 2MNZ A; 3LQI A; 2CRR A; 2E6R A; 4S3O B; 2JMD A; 2YRE A; 2JM3 A; 4MVT A; 2K16 A; 3SUB A; 4AP4 A; 2YUC A; 2YSJ A; 1DCQ A; 4PTB A; 2MT5 A; 4R8P K; 3L11 A; 2M1R A; 5LKZ A; 4Z0R A; 2VPG A; 2RSD A; 5B76 A; 4OGC A; 2K4D A; 4W4U A; 3H7H A; 2JUN A; 3VK6 A; 3E2D A; 1WEE A; 1U6G B; 4GNF A; 2YSM A; 3O7A A; 2ECW A; 4UP5 A; 1X4J A; 4I7B A; 3NG2 A; 4R7E A; 2KIZ A; 2KFT A; 2QIC A; 3SOU A; 4YBS A; 3IHP A; 3I2D A; 3M99 A; 2YHO A; 2LDR A; 4FJC A; 1WFK A; 3SOX A; 4C9Z A; 1WE9 A; 3JUE A; 2MD7 B; 3LDY A; 3FL2 A; 3RPG C; 3U5M A; 2C2L A; 3L1Z B; 3U5P A; 5B8D A; 2XEU A; 4LKA A; 3PUR A; 4FK5 A; 2QJ0 A; 1JOC A; 1Z6U A; 2YT5 A; 4A4B A; 1XWH A; 2FFW A; 2LXH C; 2FUI A; 3ZVZ B; 3L1X A; 2EA6 A; 5B77 A; 4TKP B; 1F62 A; 4F1P A; 3SHB A; 3DDT A; 2M3H A; 3ZPV E; 5J3X A; 3O35 A; 2D8U A; 2JRJ A; 3FM8 C; 1RMD A; 1T1H A; 2MUM A; 4QF3 A; 2L43 A; 2LRI C; 1LDJ B; 4UP0 A; 2YYR A; 5D1K B; 1N87 A; 3SOW A; 2UZG A; 2D8S A; 2YQL A; 2IQJ A; 1MM2 A; 3O33 A; 2KWO A; 2M85 A; 4V3L C; 3M62 A; 2F6J A; 2LGL A; 3GV4 A; 3KDE C; 2FSA A; 3FEH A; 2JMI A; 5TBN A; 2CT2 A; 5KH7 A; 3KV6 A; 3O70 A; 2G43 A; 2ECJ A; 1MM3 A; 2I50 A; 2HYE D; 5FER A; 4NN2 A; 2YQM A; 5B75 A; 3O36 A; 2XB1 A; 1WEQ A; 2M6M A; 5FEY A; 1WEO A; 2ECN A; 3T7L A; 2KWJ A; 2XP0 A; 1IYM A; 4BHW A; 3O37 A; 5SVY A; 1DVP A; 2OWA A; 4YBM A; 2XOZ A; 1WEW A; 2LGV A; 3KV5 A; 2CKL B; 3C6W A; 3U5O A; 2ECG A; 4IC3 A; 2MA5 A; 5B78 A; 4FIP A; 2MNY A; 3LJU X; 2LAU A; 3DPL R; 2PUY A; 2VPD A; 4X3G A; 2C2V S; 3EB5 A; 2FUU A; 4ZDT A; 5H1U A; 4GB0 A; 4BBQ A; 4GNE A; 2EOD A; 3HCT A; 4OGE A; 5C11 A; 4A49 A; 3N9Q A; 5DIN A; 4O64 A; 5C13 A; 2AN6 A; 4LK9 A; 3KQI A; 1CHC A; 4Z0O A; 4WZ3 B; 4XI1 A; 2L7P A; 2RI7 A; 4N3W A; 2KU3 A; 2VJF B; 3QZV A; 3MDB C; 2YHN A; 3V43 A; 1WEN A; 2E6S A; 4ZUX U; 2DSM A; 2YUR A; 2DJA A; 5G0F A; 3U5N A; 3PUQ A; 3HTK C; 5DKA A; 1HYJ A; 4PPE A; 1WEM A; 2ECI A; 4L7X A; 2L80 A; 2KE1 A; 3MHH A; 2VJE B; 5D1M B; 2VNF A; 2CKL A; 2E61 A; 3RTR B; 4A4C A; 4UI9 B; 2KWN A; 3EB6 A; 2IDA A; 2H0D A; 2VPE A; 5LCW B; 3ZYQ A; 3HCU A; 1E4U A; 2P57 A; 4F52 B; 2CRW A; 2MKE A; 4YC9 A; 1FP0 A; 2JMJ A; 1Z2Q A; 4A0C D; 3DWD A; 4QQ4 A; 3FAO A; 5I3L A; 2OXQ C; 4YAB A; 2KRE A; 3FAN A; 5TDR A; 4H9D A; 2G6Q A; 4QF2 A; 3KNV A; 2F42 A; 1VYX A; 3Q1D A; 3N9M A; 2LN0 A; 3ZTG A; 4B86 C; 4V3K C; 4I7C A; 5TRB A; 1ZBD B; 3O47 A; 5KH9 A; #chains in the Genus database with same CATH homology 4O62 A; 2L7P A; 3DDT A; 3SUB A; 2YVR A; 5SVI A; 3LVR E; 5SVY A; 3M7K A; 3KDE C; 5SVI B; 3FEH A; 3JUE A; 3DWD A; 4QQ4 A; 2D8U A; 2KKX A; 2RR4 A; 3LDY A; 2OWA A; 3FM8 C; 2EGM A; 2B0O E; 3T9K A; 1DCQ A; 2EXU A; 4OGE A; 2CON A; 4H9D A; 2XOZ A; 2FD4 A; 2XOC A; 4Z0R A; 5SVX A; 2XOY A; 3MDB C; 3FJU B; 2E61 A; 2CRR A; 4OGC A; 3Q1D A; 3H7H A; 2JUN A; 2FFW A; 5K3Q A; 2M13 A; 2YRE A; 2XP0 A; 3E2D A; 2DJA A; 2JM3 A; 2CSV A; 3PLW A; 3O47 A; 2IQJ A; 2LAU A; 2KKY A; 2P57 A; 3LJU X; 3LVQ E; 4Z0O A; 2CRW A; 4F1P A; 2MKE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
