3H7HA

Crystal structure of the human transcription elongation factor dsif, hspt4/hspt5 (176-273)
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
118
Chain Sequence
b'MGALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the human transcription elongation factor DSIF hSpt4 subunit in complex with the hSpt5 dimerization interface
pubmed doi rcsb
molecule keywords Transcription elongation factor SPT4
source organism Homo sapiens
molecule tags Transcription
total genus 33
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2009-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06093 Spt4 Spt4/RpoE2 zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.210 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3h7hA01
3H7HA 2EXUA
chains in the Genus database with same CATH superfamily
4O62A 2K1JA 5SVIA 1WILA 4B7YC 5H1VA 5D1LB 2VJFA 1MBMA 2EGMA 2CONA 1V87A 5LKTA 4AYCB 1X4IA 5FB1A 4LADB 3LQHA 1K2FA 3LQJA 4I7DA 2H0DB 1WESA 5FB0A 1G25A 4N4FA 5H1TA 2HDPA 4YBTA 1VD4A 4R2YA 2Y1MA 2Y43A 1WEVA 3GL6A 4CA1A 2RR4A 4AVXA 1WEUA 5KH3A 4YATA 3ZPV1 3ZNIA 2VJEA 5SVXA 2ECVA 3M63A 2LV9A 1WEPA 5K3QA 3N9OA 2M13A 4WZ2A 3PLWA 2KWKA 2EGPA 2VP7A 4ZQLA 5H9MA 1WGMA 2K17A 2YVRA 5SVIB 1WIMA 2BAYA 2LXPC 2MIQA 1JM7B 2Y1NA 4L58A 4AUQB 2YU4A 1LDKC 2XOYA 3FJUB 5AIUA 4Q6FA 3ASLA 5TABA 2NAAA 3MHSA 1VFYA 3LVQE 2KKYA 2YW8A 2KR4A 2KYUA 4LLBA 4LJNA 4IC2A 3N9LA 1X4UA 2KGGA 4WA6A 1HYIA 3N9NA 2L75A 5AITA 4GNGA 4S3OC 2CSYA 3O34A 4FO9A 4AYCA 2MD8C 1BORA 2VPBA 1Z60A 4WZ0A 3T6RA 2ECTA 2CSVA 3ZVYA 2LQ6A 4MSXA 2LGGA 2PNXA 4YADA 3LVRE 3M7KA 2G45A 5B79A 5LKUA 3C5KA 4YAXA 5JG6A 2KKXA 3N9PA 2L0BA 3PHDA 2MA6A 2EXUA 1FBVA 4GNDA 2CSZA 2XOCA 2QIZA 2ZETC 4CCGX 2LGKA 2DX8A 4P5OB 5LKXA 5EYAF 3DQVR 3HCSA 1JM7A 5G05B 2KGIA 5G04B 2B0OE 2F6NA 3T9KA 2L5UA 2FD4A 3LRQA 5TDWA 3RPGB 2MNZA 3LQIA 2CRRA 2E6RA 4S3OB 2JMDA 2YREA 2JM3A 4MVTA 2K16A 3SUBA 4AP4A 2YUCA 2YSJA 1DCQA 4PTBA 2MT5A 4R8PK 3L11A 2M1RA 5LKZA 4Z0RA 2VPGA 2RSDA 5B76A 4OGCA 2K4DA 4W4UA 3H7HA 2JUNA 3VK6A 3E2DA 1WEEA 1U6GB 4GNFA 2YSMA 3O7AA 2ECWA 4UP5A 1X4JA 4I7BA 3NG2A 4R7EA 2KIZA 2KFTA 2QICA 3SOUA 4YBSA 3IHPA 3I2DA 3M99A 2YHOA 2LDRA 4FJCA 1WFKA 3SOXA 4C9ZA 1WE9A 3JUEA 2MD7B 3LDYA 3FL2A 3RPGC 3U5MA 2C2LA 3L1ZB 3U5PA 5B8DA 2XEUA 4LKAA 3PURA 4FK5A 2QJ0A 1JOCA 1Z6UA 2YT5A 4A4BA 1XWHA 2FFWA 2LXHC 2FUIA 3ZVZB 3L1XA 2EA6A 5B77A 4TKPB 1F62A 4F1PA 3SHBA 3DDTA 2M3HA 3ZPVE 5J3XA 3O35A 2D8UA 2JRJA 3FM8C 1RMDA 1T1HA 2MUMA 4QF3A 2L43A 2LRIC 1LDJB 4UP0A 2YYRA 5D1KB 1N87A 3SOWA 2UZGA 2D8SA 2YQLA 2IQJA 1MM2A 3O33A 2KWOA 2M85A 4V3LC 3M62A 2F6JA 2LGLA 3GV4A 3KDEC 2FSAA 3FEHA 2JMIA 5TBNA 2CT2A 5KH7A 3KV6A 3O70A 2G43A 2ECJA 1MM3A 2I50A 2HYED 5FERA 4NN2A 2YQMA 5B75A 3O36A 2XB1A 1WEQA 2M6MA 5FEYA 1WEOA 2ECNA 3T7LA 2KWJA 2XP0A 1IYMA 4BHWA 3O37A 5SVYA 1DVPA 2OWAA 4YBMA 2XOZA 1WEWA 2LGVA 3KV5A 2CKLB 3C6WA 3U5OA 2ECGA 4IC3A 2MA5A 5B78A 4FIPA 2MNYA 3LJUX 2LAUA 3DPLR 2PUYA 2VPDA 4X3GA 2C2VS 3EB5A 2FUUA 4ZDTA 5H1UA 4GB0A 4BBQA 4GNEA 2EODA 3HCTA 4OGEA 5C11A 4A49A 3N9QA 5DINA 4O64A 5C13A 2AN6A 4LK9A 3KQIA 1CHCA 4Z0OA 4WZ3B 4XI1A 2L7PA 2RI7A 4N3WA 2KU3A 2VJFB 3QZVA 3MDBC 2YHNA 3V43A 1WENA 2E6SA 4ZUXU 2DSMA 2YURA 2DJAA 5G0FA 3U5NA 3PUQA 3HTKC 5DKAA 1HYJA 4PPEA 1WEMA 2ECIA 4L7XA 2L80A 2KE1A 3MHHA 2VJEB 5D1MB 2VNFA 2CKLA 2E61A 3RTRB 4A4CA 4UI9B 2KWNA 3EB6A 2IDAA 2H0DA 2VPEA 5LCWB 3ZYQA 3HCUA 1E4UA 2P57A 4F52B 2CRWA 2MKEA 4YC9A 1FP0A 2JMJA 1Z2QA 4A0CD 3DWDA 4QQ4A 3FAOA 5I3LA 2OXQC 4YABA 2KREA 3FANA 5TDRA 4H9DA 2G6QA 4QF2A 3KNVA 2F42A 1VYXA 3Q1DA 3N9MA 2LN0A 3ZTGA 4B86C 4V3KC 4I7CA 5TRBA 1ZBDB 3O47A 5KH9A
chains in the Genus database with same CATH topology
4O62A 2L7PA 3DDTA 3SUBA 2YVRA 5SVIA 3LVRE 5SVYA 3M7KA 3KDEC 5SVIB 3FEHA 3JUEA 3DWDA 4QQ4A 2D8UA 2KKXA 2RR4A 3LDYA 2OWAA 3FM8C 2EGMA 2B0OE 3T9KA 1DCQA 2EXUA 4OGEA 2CONA 4H9DA 2XOZA 2FD4A 2XOCA 4Z0RA 5SVXA 2XOYA 3MDBC 3FJUB 2E61A 2CRRA 4OGCA 3Q1DA 3H7HA 2JUNA 2FFWA 5K3QA 2M13A 2YREA 2XP0A 3E2DA 2DJAA 2JM3A 2CSVA 3PLWA 3O47A 2IQJA 2LAUA 2KKYA 2P57A 3LJUX 3LVQE 4Z0OA 2CRWA 4F1PA 2MKEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H7H A;  2EXU A; 
#chains in the Genus database with same CATH topology
 4O62 A;  2K1J A;  5SVI A;  1WIL A;  4B7Y C;  5H1V A;  5D1L B;  2VJF A;  1MBM A;  2EGM A;  2CON A;  1V87 A;  5LKT A;  4AYC B;  1X4I A;  5FB1 A;  4LAD B;  3LQH A;  1K2F A;  3LQJ A;  4I7D A;  2H0D B;  1WES A;  5FB0 A;  1G25 A;  4N4F A;  5H1T A;  2HDP A;  4YBT A;  1VD4 A;  4R2Y A;  2Y1M A;  2Y43 A;  1WEV A;  3GL6 A;  4CA1 A;  2RR4 A;  4AVX A;  1WEU A;  5KH3 A;  4YAT A;  3ZPV 1;  3ZNI A;  2VJE A;  5SVX A;  2ECV A;  3M63 A;  2LV9 A;  1WEP A;  5K3Q A;  3N9O A;  2M13 A;  4WZ2 A;  3PLW A;  2KWK A;  2EGP A;  2VP7 A;  4ZQL A;  5H9M A;  1WGM A;  2K17 A;  2YVR A;  5SVI B;  1WIM A;  2BAY A;  2LXP C;  2MIQ A;  1JM7 B;  2Y1N A;  4L58 A;  4AUQ B;  2YU4 A;  1LDK C;  2XOY A;  3FJU B;  5AIU A;  4Q6F A;  3ASL A;  5TAB A;  2NAA A;  3MHS A;  1VFY A;  3LVQ E;  2KKY A;  2YW8 A;  2KR4 A;  2KYU A;  4LLB A;  4LJN A;  4IC2 A;  3N9L A;  1X4U A;  2KGG A;  4WA6 A;  1HYI A;  3N9N A;  2L75 A;  5AIT A;  4GNG A;  4S3O C;  2CSY A;  3O34 A;  4FO9 A;  4AYC A;  2MD8 C;  1BOR A;  2VPB A;  1Z60 A;  4WZ0 A;  3T6R A;  2ECT A;  2CSV A;  3ZVY A;  2LQ6 A;  4MSX A;  2LGG A;  2PNX A;  4YAD A;  3LVR E;  3M7K A;  2G45 A;  5B79 A;  5LKU A;  3C5K A;  4YAX A;  5JG6 A;  2KKX A;  3N9P A;  2L0B A;  3PHD A;  2MA6 A;  2EXU A;  1FBV A;  4GND A;  2CSZ A;  2XOC A;  2QIZ A;  2ZET C;  4CCG X;  2LGK A;  2DX8 A;  4P5O B;  5LKX A;  5EYA F;  3DQV R;  3HCS A;  1JM7 A;  5G05 B;  2KGI A;  5G04 B;  2B0O E;  2F6N A;  3T9K A;  2L5U A;  2FD4 A;  3LRQ A;  5TDW A;  3RPG B;  2MNZ A;  3LQI A;  2CRR A;  2E6R A;  4S3O B;  2JMD A;  2YRE A;  2JM3 A;  4MVT A;  2K16 A;  3SUB A;  4AP4 A;  2YUC A;  2YSJ A;  1DCQ A;  4PTB A;  2MT5 A;  4R8P K;  3L11 A;  2M1R A;  5LKZ A;  4Z0R A;  2VPG A;  2RSD A;  5B76 A;  4OGC A;  2K4D A;  4W4U A;  3H7H A;  2JUN A;  3VK6 A;  3E2D A;  1WEE A;  1U6G B;  4GNF A;  2YSM A;  3O7A A;  2ECW A;  4UP5 A;  1X4J A;  4I7B A;  3NG2 A;  4R7E A;  2KIZ A;  2KFT A;  2QIC A;  3SOU A;  4YBS A;  3IHP A;  3I2D A;  3M99 A;  2YHO A;  2LDR A;  4FJC A;  1WFK A;  3SOX A;  4C9Z A;  1WE9 A;  3JUE A;  2MD7 B;  3LDY A;  3FL2 A;  3RPG C;  3U5M A;  2C2L A;  3L1Z B;  3U5P A;  5B8D A;  2XEU A;  4LKA A;  3PUR A;  4FK5 A;  2QJ0 A;  1JOC A;  1Z6U A;  2YT5 A;  4A4B A;  1XWH A;  2FFW A;  2LXH C;  2FUI A;  3ZVZ B;  3L1X A;  2EA6 A;  5B77 A;  4TKP B;  1F62 A;  4F1P A;  3SHB A;  3DDT A;  2M3H A;  3ZPV E;  5J3X A;  3O35 A;  2D8U A;  2JRJ A;  3FM8 C;  1RMD A;  1T1H A;  2MUM A;  4QF3 A;  2L43 A;  2LRI C;  1LDJ B;  4UP0 A;  2YYR A;  5D1K B;  1N87 A;  3SOW A;  2UZG A;  2D8S A;  2YQL A;  2IQJ A;  1MM2 A;  3O33 A;  2KWO A;  2M85 A;  4V3L C;  3M62 A;  2F6J A;  2LGL A;  3GV4 A;  3KDE C;  2FSA A;  3FEH A;  2JMI A;  5TBN A;  2CT2 A;  5KH7 A;  3KV6 A;  3O70 A;  2G43 A;  2ECJ A;  1MM3 A;  2I50 A;  2HYE D;  5FER A;  4NN2 A;  2YQM A;  5B75 A;  3O36 A;  2XB1 A;  1WEQ A;  2M6M A;  5FEY A;  1WEO A;  2ECN A;  3T7L A;  2KWJ A;  2XP0 A;  1IYM A;  4BHW A;  3O37 A;  5SVY A;  1DVP A;  2OWA A;  4YBM A;  2XOZ A;  1WEW A;  2LGV A;  3KV5 A;  2CKL B;  3C6W A;  3U5O A;  2ECG A;  4IC3 A;  2MA5 A;  5B78 A;  4FIP A;  2MNY A;  3LJU X;  2LAU A;  3DPL R;  2PUY A;  2VPD A;  4X3G A;  2C2V S;  3EB5 A;  2FUU A;  4ZDT A;  5H1U A;  4GB0 A;  4BBQ A;  4GNE A;  2EOD A;  3HCT A;  4OGE A;  5C11 A;  4A49 A;  3N9Q A;  5DIN A;  4O64 A;  5C13 A;  2AN6 A;  4LK9 A;  3KQI A;  1CHC A;  4Z0O A;  4WZ3 B;  4XI1 A;  2L7P A;  2RI7 A;  4N3W A;  2KU3 A;  2VJF B;  3QZV A;  3MDB C;  2YHN A;  3V43 A;  1WEN A;  2E6S A;  4ZUX U;  2DSM A;  2YUR A;  2DJA A;  5G0F A;  3U5N A;  3PUQ A;  3HTK C;  5DKA A;  1HYJ A;  4PPE A;  1WEM A;  2ECI A;  4L7X A;  2L80 A;  2KE1 A;  3MHH A;  2VJE B;  5D1M B;  2VNF A;  2CKL A;  2E61 A;  3RTR B;  4A4C A;  4UI9 B;  2KWN A;  3EB6 A;  2IDA A;  2H0D A;  2VPE A;  5LCW B;  3ZYQ A;  3HCU A;  1E4U A;  2P57 A;  4F52 B;  2CRW A;  2MKE A;  4YC9 A;  1FP0 A;  2JMJ A;  1Z2Q A;  4A0C D;  3DWD A;  4QQ4 A;  3FAO A;  5I3L A;  2OXQ C;  4YAB A;  2KRE A;  3FAN A;  5TDR A;  4H9D A;  2G6Q A;  4QF2 A;  3KNV A;  2F42 A;  1VYX A;  3Q1D A;  3N9M A;  2LN0 A;  3ZTG A;  4B86 C;  4V3K C;  4I7C A;  5TRB A;  1ZBD B;  3O47 A;  5KH9 A; 
#chains in the Genus database with same CATH homology
 4O62 A;  2L7P A;  3DDT A;  3SUB A;  2YVR A;  5SVI A;  3LVR E;  5SVY A;  3M7K A;  3KDE C;  5SVI B;  3FEH A;  3JUE A;  3DWD A;  4QQ4 A;  2D8U A;  2KKX A;  2RR4 A;  3LDY A;  2OWA A;  3FM8 C;  2EGM A;  2B0O E;  3T9K A;  1DCQ A;  2EXU A;  4OGE A;  2CON A;  4H9D A;  2XOZ A;  2FD4 A;  2XOC A;  4Z0R A;  5SVX A;  2XOY A;  3MDB C;  3FJU B;  2E61 A;  2CRR A;  4OGC A;  3Q1D A;  3H7H A;  2JUN A;  2FFW A;  5K3Q A;  2M13 A;  2YRE A;  2XP0 A;  3E2D A;  2DJA A;  2JM3 A;  2CSV A;  3PLW A;  3O47 A;  2IQJ A;  2LAU A;  2KKY A;  2P57 A;  3LJU X;  3LVQ E;  4Z0O A;  2CRW A;  4F1P A;  2MKE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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