3H7HA

Crystal structure of the human transcription elongation factor dsif, hspt4/hspt5 (176-273)
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
118
Chain Sequence
MGALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Homo sapiens
publication title Crystal structure of the human transcription elongation factor DSIF hSpt4 subunit in complex with the hSpt5 dimerization interface
pubmed doi rcsb
molecule keywords Transcription elongation factor SPT4
total genus 33
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2009-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06093 Spt4 Spt4/RpoE2 zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.210 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3h7hA01
3H7HA 2EXUA
chains in the Genus database with same CATH superfamily
2HYED 1BORA 2I50A 4ZUXU 5SVIB 4Z0OA 4WZ2A 1Z6UA 2KGIA 3KV6A 3O36A 3O7AA 2ECIA 2K4DA 2M85A 4S3OC 3ZTGA 5AITA 3Q1DA 4F52B 2RR4A 4CCGX 1RMDA 4O62A 2M3HA 5TDWA 5DINA 3V43A 3C5KA 2MIQA 2LXHC 2Y1NA 2QIZA 5B8DA 3LVQE 2PNXA 2MT5A 5TDRA 3HTKC 1FP0A 4YATA 3M7KA 2MD7B 2YQMA 2M6MA 3DPLR 3EB5A 5G0FA 2MD8C 4O64A 1X4IA 3M62A 3PLWA 1XWHA 2ECNA 4FJCA 4LKAA 2D8UA 1WEOA 2VP7A 4UP5A 3U5MA 4C9ZA 2LXPC 4N4FA 3GL6A 3PURA 2YHOA 1N87A 2LGKA 3DWDA 4S3OB 4GNEA 1FBVA 4AVXA 4AP4A 4WZ0A 3O35A 2DJAA 4ZDTA 2KYUA 4BBQA 1U6GB 4IC3A 2G43A 3HCTA 5LKUA 5J3XA 2JMDA 5KH9A 5K3QA 2FD4A 1WIMA 5SVIA 4A49A 4AYCB 4NN2A 2MKEA 3IHPA 5LKXA 5B79A 2M1RA 3M63A 2Y1MA 3L1ZB 2F6NA 3N9NA 2NAAA 2MNYA 3M99A 4YADA 3L11A 4QF3A 3EB6A 2AN6A 2KWJA 2K1JA 2L0BA 3O47A 5FEYA 1LDJB 3O70A 4N3WA 4PTBA 3MHHA 2YUCA 2YU4A 5LKTA 3PHDA 1VYXA 1X4JA 2JM3A 2CONA 4WA6A 2QJ0A 2ECVA 4LADB 3ZVYA 4L58A 2YSMA 5B75A 4OGEA 4UP0A 4TKPB 3FAOA 2CSYA 4YBTA 5G04B 2KREA 2L7PA 4LK9A 2EODA 2VPDA 1T1HA 3FL2A 4GB0A 3NG2A 5H1VA 4LJNA 1JM7B 1VD4A 2MUMA 2VJEB 1IYMA 4QF2A 3JUEA 5TBNA 4YBSA 1F62A 2E6RA 4GNFA 2LDRA 5B76A 1V87A 4W4UA 2CT2A 2DSMA 3ZNIA 2KR4A 2KKYA 2EGMA 3O37A 5TRBA 4FO9A 4B7YC 4FIPA 3ZPVE 5FB1A 4AYCA 2CRRA 2C2LA 4WZ3B 1WEPA 1WGMA 1HYIA 3HCUA 2OWAA 3MDBC 4BHWA 1X4UA 3FM8C 4A4BA 3ZPV1 2FSAA 2K17A 2YURA 3PUQA 4YAXA 2JMIA 3N9QA 3RPGC 2KWNA 2RSDA 3MHSA 5KH7A 3ASLA 2KKXA 4R7EA 2XP0A 3QZVA 2KGGA 2JUNA 2VPEA 2FUIA 4FK5A 1WEWA 1E4UA 1Z2QA 3SUBA 5FB0A 3LVRE 5JG6A 2LGGA 2ECTA 2H0DB 3FJUB 4MVTA 2CKLB 3H7HA 4MSXA 1ZBDB 4R2YA 1DCQA 3SOUA 1JM7A 4V3LC 2P57A 2F6JA 2VJEA 2CRWA 2FUUA 3VK6A 3FEHA 2KIZA 1VFYA 2L5UA 5D1KB 3RPGB 2LV9A 5D1MB 3T9KA 2YW8A 2KE1A 2ECWA 3HCSA 2LGVA 4ZQLA 3U5OA 5FERA 1LDKC 3N9PA 5DKAA 5H1TA 2EA6A 3LJUX 1WEVA 2KU3A 2BAYA 2M13A 2XOYA 3DQVR 3O34A 4A0CD 4YABA 2VJFB 2HDPA 4B86C 4V3KC 1WESA 2IQJA 2CSVA 2K16A 3KV5A 4A4CA 1Z60A 4XI1A 3N9OA 2VPGA 4QQ4A 1WILA 2B0OE 2KWKA 2ECJA 2VPBA 4LLBA 3LDYA 2Y43A 2H0DA 2CKLA 5AIUA 4Z0RA 2XOZA 4H9DA 3T7LA 2MA5A 2LQ6A 2OXQC 3O33A 2EXUA 3KQIA 4UI9B 1MBMA 5TABA 3LQJA 3L1XA 3E2DA 4YBMA 1WFKA 2E6SA 5G05B 3ZYQA 2L80A 1JOCA 3LQHA 2G45A 2YYRA 4IC2A 3LRQA 3T6RA 1WENA 4PPEA 2QICA 4GNGA 2F42A 2IDAA 5SVYA 5SVXA 2XB1A 4R8PK 2MNZA 5I3LA 1WE9A 4P5OB 2JRJA 3SHBA 5LCWB 3KDEC 3GV4A 2KWOA 2XEUA 5H9MA 3KNVA 3LQIA 2LGLA 2LN0A 2C2VS 3SOWA 2EGPA 1DVPA 2YREA 2YQLA 2G6QA 2KFTA 3FANA 2PUYA 1MM2A 2VJFA 4I7CA 2DX8A 5B77A 3SOXA 1WEEA 1CHCA 3I2DA 2ECGA 2YHNA 2YVRA 4OGCA 2ZETC 1HYJA 2VNFA 2MA6A 2RI7A 3DDTA 4CA1A 2L43A 3N9LA 3ZVZB 5C11A 2FFWA 2LRIC 1K2FA 2YSJA 2CSZA 1WEMA 3RTRB 4F1PA 4YC9A 2D8SA 2LAUA 2UZGA 3N9MA 4L7XA 5KH3A 2JMJA 5LKZA 1MM3A 4AUQB 3U5NA 5H1UA 5EYAF 2YT5A 4Q6FA 3C6WA 1WEQA 4X3GA 5D1LB 4I7DA 1WEUA 1G25A 2L75A 2XOCA 5C13A 4GNDA 5B78A 3U5PA 2E61A 4I7BA
chains in the Genus database with same CATH topology
3SUBA 4OGEA 3LVRE 2KKYA 2M13A 2D8UA 2YREA 4QQ4A 2XOYA 2B0OE 2EGMA 5SVIB 3LVQE 2FD4A 5K3QA 2L7PA 3T9KA 3FJUB 4Z0OA 5SVIA 3LDYA 2FFWA 3O47A 3H7HA 2MKEA 4Z0RA 2XOZA 2KKXA 2CRRA 3PLWA 4H9DA 1DCQA 3DWDA 2XP0A 3M7KA 5SVYA 5SVXA 4F1PA 3Q1DA 2P57A 3FEHA 3JUEA 2EXUA 2JUNA 2RR4A 2IQJA 3KDEC 2CSVA 2LAUA 2CRWA 2XOCA 2OWAA 2YVRA 4O62A 2JM3A 3E2DA 3MDBC 2CONA 3LJUX 3FM8C 4OGCA 2DJAA 3DDTA 2E61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H7H A;  2EXU A; 
#chains in the Genus database with same CATH topology
 2HYE D;  1BOR A;  2I50 A;  4ZUX U;  5SVI B;  4Z0O A;  4WZ2 A;  1Z6U A;  2KGI A;  3KV6 A;  3O36 A;  3O7A A;  2ECI A;  2K4D A;  2M85 A;  4S3O C;  3ZTG A;  5AIT A;  3Q1D A;  4F52 B;  2RR4 A;  4CCG X;  1RMD A;  4O62 A;  2M3H A;  5TDW A;  5DIN A;  3V43 A;  3C5K A;  2MIQ A;  2LXH C;  2Y1N A;  2QIZ A;  5B8D A;  3LVQ E;  2PNX A;  2MT5 A;  5TDR A;  3HTK C;  1FP0 A;  4YAT A;  3M7K A;  2MD7 B;  2YQM A;  2M6M A;  3DPL R;  3EB5 A;  5G0F A;  2MD8 C;  4O64 A;  1X4I A;  3M62 A;  3PLW A;  1XWH A;  2ECN A;  4FJC A;  4LKA A;  2D8U A;  1WEO A;  2VP7 A;  4UP5 A;  3U5M A;  4C9Z A;  2LXP C;  4N4F A;  3GL6 A;  3PUR A;  2YHO A;  1N87 A;  2LGK A;  3DWD A;  4S3O B;  4GNE A;  1FBV A;  4AVX A;  4AP4 A;  4WZ0 A;  3O35 A;  2DJA A;  4ZDT A;  2KYU A;  4BBQ A;  1U6G B;  4IC3 A;  2G43 A;  3HCT A;  5LKU A;  5J3X A;  2JMD A;  5KH9 A;  5K3Q A;  2FD4 A;  1WIM A;  5SVI A;  4A49 A;  4AYC B;  4NN2 A;  2MKE A;  3IHP A;  5LKX A;  5B79 A;  2M1R A;  3M63 A;  2Y1M A;  3L1Z B;  2F6N A;  3N9N A;  2NAA A;  2MNY A;  3M99 A;  4YAD A;  3L11 A;  4QF3 A;  3EB6 A;  2AN6 A;  2KWJ A;  2K1J A;  2L0B A;  3O47 A;  5FEY A;  1LDJ B;  3O70 A;  4N3W A;  4PTB A;  3MHH A;  2YUC A;  2YU4 A;  5LKT A;  3PHD A;  1VYX A;  1X4J A;  2JM3 A;  2CON A;  4WA6 A;  2QJ0 A;  2ECV A;  4LAD B;  3ZVY A;  4L58 A;  2YSM A;  5B75 A;  4OGE A;  4UP0 A;  4TKP B;  3FAO A;  2CSY A;  4YBT A;  5G04 B;  2KRE A;  2L7P A;  4LK9 A;  2EOD A;  2VPD A;  1T1H A;  3FL2 A;  4GB0 A;  3NG2 A;  5H1V A;  4LJN A;  1JM7 B;  1VD4 A;  2MUM A;  2VJE B;  1IYM A;  4QF2 A;  3JUE A;  5TBN A;  4YBS A;  1F62 A;  2E6R A;  4GNF A;  2LDR A;  5B76 A;  1V87 A;  4W4U A;  2CT2 A;  2DSM A;  3ZNI A;  2KR4 A;  2KKY A;  2EGM A;  3O37 A;  5TRB A;  4FO9 A;  4B7Y C;  4FIP A;  3ZPV E;  5FB1 A;  4AYC A;  2CRR A;  2C2L A;  4WZ3 B;  1WEP A;  1WGM A;  1HYI A;  3HCU A;  2OWA A;  3MDB C;  4BHW A;  1X4U A;  3FM8 C;  4A4B A;  3ZPV 1;  2FSA A;  2K17 A;  2YUR A;  3PUQ A;  4YAX A;  2JMI A;  3N9Q A;  3RPG C;  2KWN A;  2RSD A;  3MHS A;  5KH7 A;  3ASL A;  2KKX A;  4R7E A;  2XP0 A;  3QZV A;  2KGG A;  2JUN A;  2VPE A;  2FUI A;  4FK5 A;  1WEW A;  1E4U A;  1Z2Q A;  3SUB A;  5FB0 A;  3LVR E;  5JG6 A;  2LGG A;  2ECT A;  2H0D B;  3FJU B;  4MVT A;  2CKL B;  3H7H A;  4MSX A;  1ZBD B;  4R2Y A;  1DCQ A;  3SOU A;  1JM7 A;  4V3L C;  2P57 A;  2F6J A;  2VJE A;  2CRW A;  2FUU A;  3VK6 A;  3FEH A;  2KIZ A;  1VFY A;  2L5U A;  5D1K B;  3RPG B;  2LV9 A;  5D1M B;  3T9K A;  2YW8 A;  2KE1 A;  2ECW A;  3HCS A;  2LGV A;  4ZQL A;  3U5O A;  5FER A;  1LDK C;  3N9P A;  5DKA A;  5H1T A;  2EA6 A;  3LJU X;  1WEV A;  2KU3 A;  2BAY A;  2M13 A;  2XOY A;  3DQV R;  3O34 A;  4A0C D;  4YAB A;  2VJF B;  2HDP A;  4B86 C;  4V3K C;  1WES A;  2IQJ A;  2CSV A;  2K16 A;  3KV5 A;  4A4C A;  1Z60 A;  4XI1 A;  3N9O A;  2VPG A;  4QQ4 A;  1WIL A;  2B0O E;  2KWK A;  2ECJ A;  2VPB A;  4LLB A;  3LDY A;  2Y43 A;  2H0D A;  2CKL A;  5AIU A;  4Z0R A;  2XOZ A;  4H9D A;  3T7L A;  2MA5 A;  2LQ6 A;  2OXQ C;  3O33 A;  2EXU A;  3KQI A;  4UI9 B;  1MBM A;  5TAB A;  3LQJ A;  3L1X A;  3E2D A;  4YBM A;  1WFK A;  2E6S A;  5G05 B;  3ZYQ A;  2L80 A;  1JOC A;  3LQH A;  2G45 A;  2YYR A;  4IC2 A;  3LRQ A;  3T6R A;  1WEN A;  4PPE A;  2QIC A;  4GNG A;  2F42 A;  2IDA A;  5SVY A;  5SVX A;  2XB1 A;  4R8P K;  2MNZ A;  5I3L A;  1WE9 A;  4P5O B;  2JRJ A;  3SHB A;  5LCW B;  3KDE C;  3GV4 A;  2KWO A;  2XEU A;  5H9M A;  3KNV A;  3LQI A;  2LGL A;  2LN0 A;  2C2V S;  3SOW A;  2EGP A;  1DVP A;  2YRE A;  2YQL A;  2G6Q A;  2KFT A;  3FAN A;  2PUY A;  1MM2 A;  2VJF A;  4I7C A;  2DX8 A;  5B77 A;  3SOX A;  1WEE A;  1CHC A;  3I2D A;  2ECG A;  2YHN A;  2YVR A;  4OGC A;  2ZET C;  1HYJ A;  2VNF A;  2MA6 A;  2RI7 A;  3DDT A;  4CA1 A;  2L43 A;  3N9L A;  3ZVZ B;  5C11 A;  2FFW A;  2LRI C;  1K2F A;  2YSJ A;  2CSZ A;  1WEM A;  3RTR B;  4F1P A;  4YC9 A;  2D8S A;  2LAU A;  2UZG A;  3N9M A;  4L7X A;  5KH3 A;  2JMJ A;  5LKZ A;  1MM3 A;  4AUQ B;  3U5N A;  5H1U A;  5EYA F;  2YT5 A;  4Q6F A;  3C6W A;  1WEQ A;  4X3G A;  5D1L B;  4I7D A;  1WEU A;  1G25 A;  2L75 A;  2XOC A;  5C13 A;  4GND A;  5B78 A;  3U5P A;  2E61 A;  4I7B A; 
#chains in the Genus database with same CATH homology
 3SUB A;  4OGE A;  3LVR E;  2KKY A;  2M13 A;  2D8U A;  2YRE A;  4QQ4 A;  2XOY A;  2B0O E;  2EGM A;  5SVI B;  3LVQ E;  2FD4 A;  5K3Q A;  2L7P A;  3T9K A;  3FJU B;  4Z0O A;  5SVI A;  3LDY A;  2FFW A;  3O47 A;  3H7H A;  2MKE A;  4Z0R A;  2XOZ A;  2KKX A;  2CRR A;  3PLW A;  4H9D A;  1DCQ A;  3DWD A;  2XP0 A;  3M7K A;  5SVY A;  5SVX A;  4F1P A;  3Q1D A;  2P57 A;  3FEH A;  3JUE A;  2EXU A;  2JUN A;  2RR4 A;  2IQJ A;  3KDE C;  2CSV A;  2LAU A;  2CRW A;  2XOC A;  2OWA A;  2YVR A;  4O62 A;  2JM3 A;  3E2D A;  3MDB C;  2CON A;  3LJU X;  3FM8 C;  4OGC A;  2DJA A;  3DDT A;  2E61 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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