2E61A

Solution structure of the zf-cw domain in zinc finger cw-type pwwp domain protein 1
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
69
structure length
69
Chain Sequence
b'GSSGSSGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTGLE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into the zinc finger CW domain as a histone modification reader
pubmed doi rcsb
molecule keywords Zinc finger CW-type PWWP domain protein 1
source organism Homo sapiens
molecule tags Structural genomics, unknown function
total genus 4
structure length 69
sequence length 69
ec nomenclature
pdb deposition date 2006-12-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07496 zf-CW CW-type Zinc Finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.100 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2e61A00
2L7PA 4Z0OA 4Z0RA 2E61A 5SVIA 5SVXA 5SVIB 4QQ4A 2RR4A 5SVYA 4O62A
chains in the Genus database with same CATH superfamily
5SVXA 5AIUA 2XB1A 2XOCA 2ECVA 2VJEB 2KKYA 2YQMA 4FIPA 1HYJA 2YREA 4N3WA 5D1LB 2JMDA 1MM2A 3SUBA 4YADA 4O62A 1X4JA 3FAOA 1LDJB 3N9NA 3FM8C 2YT5A 2KWJA 2L7PA 3GV4A 2KYUA 4H9DA 2YHOA 3C5KA 5G05B 2CRRA 5G0FA 2KREA 2MA5A 2LDRA 4PPEA 5B79A 2LGLA 3IHPA 1X4IA 2HDPA 2H0DA 3LQIA 2KWNA 1WGMA 3L11A 3PURA 5B75A 4ZQLA 2XP0A 3U5OA 4TKPB 5LCWB 4C9ZA 2VJFA 2LRIC 2LXHC 4B86C 4ZUXU 3U5PA 2IDAA 2DX8A 2E61A 2ECTA 3KQIA 1VFYA 2ECNA 3FANA 2VNFA 3O35A 3Q1DA 4BBQA 5TDRA 2QICA 3SOUA 2ZETC 3O70A 2DSMA 4MVTA 3NG2A 3O34A 3LQHA 2G43A 2H0DB 2JRJA 2L43A 2LV9A 4WZ0A 1N87A 5TABA 4F1PA 1WEUA 2F6JA 3HCUA 3L1ZB 2MD7B 2D8SA 4A4CA 2VJFB 5B76A 4A49A 2XOYA 4CCGX 2JMJA 2E6SA 2Y1NA 3EB6A 3N9MA 3T9KA 2Y43A 4LJNA 3SOXA 3O36A 5EYAF 4V3LC 1WEVA 4QF3A 4ZDTA 2MT5A 2LXPC 3LVRE 2K17A 2LGVA 3FJUB 3O47A 2CONA 2M1RA 2EODA 2Y1MA 5G04B 4WZ2A 2JMIA 4GNDA 3GL6A 3U5MA 4W4UA 2YURA 4YBTA 1WEOA 2B0OE 5AITA 4YC9A 1E4UA 4XI1A 3KV5A 1Z6UA 4Z0OA 1Z60A 5LKTA 3N9LA 4GNGA 3M62A 2L5UA 3U5NA 3E2DA 2VPBA 3C6WA 4LK9A 3T7LA 4WA6A 3PHDA 3RPGB 2UZGA 1WILA 4X3GA 5FERA 4A4BA 3H7HA 4V3KC 1RMDA 2CSVA 1JOCA 3HCSA 4UI9B 2M85A 2PUYA 4GB0A 4FK5A 3N9PA 4F52B 2FUIA 3VK6A 3LQJA 3M99A 3ZVZB 1WESA 1Z2QA 1WIMA 2YSMA 3ZPVE 3O37A 5FB0A 5D1KB 5LKZA 1WEWA 3LJUX 2D8UA 2C2VS 2HYED 3ZPV1 3KDEC 2YSJA 1U6GB 4AVXA 3RPGC 2L0BA 1BORA 3FL2A 2KE1A 2ECJA 2P57A 5H1TA 1MBMA 5JG6A 5J3XA 4FO9A 2C2LA 2JM3A 2OXQC 4L7XA 4R2YA 3V43A 4OGCA 2KIZA 3ASLA 4WZ3B 5SVYA 5KH3A 2LQ6A 2YUCA 3EB5A 4CA1A 2YHNA 5TDWA 3MHHA 2KGGA 4I7DA 2VPDA 4GNFA 2MNZA 4R7EA 2EXUA 1HYIA 2OWAA 4YATA 3SHBA 2K4DA 1JM7A 1WE9A 2KWOA 2CRWA 4AP4A 4QF2A 2CSZA 4GNEA 2VP7A 2VPEA 1VYXA 5I3LA 4A0CD 3I2DA 3N9QA 3LVQE 2M3HA 5C11A 1WEPA 2FUUA 4LLBA 2QIZA 2ECIA 2G45A 4IC2A 3RTRB 4N4FA 2L80A 2YQLA 2RSDA 4MSXA 4YBMA 2VPGA 2K16A 4YAXA 2CKLA 2YW8A 2LGGA 3DWDA 2RI7A 4YABA 1JM7B 1F62A 2BAYA 2EGPA 3MHSA 3DDTA 3HTKC 4P5OB 2F42A 2XOZA 4Z0RA 2YYRA 3MDBC 2ECWA 1K2FA 1WEQA 1T1HA 3L1XA 5FB1A 4QQ4A 1DVPA 5TBNA 1MM3A 1LDKC 2M13A 2CKLB 2KFTA 4Q6FA 5D1MB 1WEEA 2G6QA 2KR4A 2KGIA 3ZTGA 4O64A 5SVIA 2JUNA 2LAUA 3DPLR 2MIQA 3KNVA 2M6MA 1WENA 2F6NA 4AUQB 2FD4A 3QZVA 2K1JA 2MA6A 2PNXA 2IQJA 5TRBA 2FSAA 3ZVYA 5LKXA 2KU3A 3LDYA 5B78A 2MD8C 4OGEA 3M63A 4S3OB 2LGKA 4B7YC 2QJ0A 2MNYA 2KKXA 4IC3A 5K3QA 5SVIB 4AYCA 5FEYA 5H9MA 4R8PK 4I7CA 2CT2A 5H1VA 2ECGA 2NAAA 2EA6A 3N9OA 4NN2A 1WEMA 1XWHA 1IYMA 1DCQA 4LKAA 2DJAA 1X4UA 1VD4A 5C13A 1G25A 2EGMA 3ZYQA 3O33A 4YBSA 5B8DA 2MUMA 3JUEA 4PTBA 2RR4A 4S3OC 5KH9A 3HCTA 4AYCB 2I50A 3FEHA 4BHWA 1FP0A 4FJCA 1ZBDB 5LKUA 3O7AA 1FBVA 2AN6A 2E6RA 3M7KA 2KWKA 2VJEA 4UP0A 4UP5A 3DQVR 1V87A 5DKAA 4I7BA 3T6RA 1CHCA 2LN0A 3SOWA 2L75A 2FFWA 5KH7A 3PUQA 3PLWA 4L58A 5B77A 4LADB 2XEUA 5DINA 2CSYA 1WFKA 3KV6A 2YVRA 2MKEA 5H1UA 3ZNIA 2YU4A 3LRQA
chains in the Genus database with same CATH topology
3LJUX 3H7HA 2FD4A 3JUEA 2D8UA 5SVXA 2CSVA 2M13A 5SVIB 2XOCA 5SVYA 2KKYA 2RR4A 3FM8C 2L7PA 3LVRE 4H9DA 2FFWA 2IQJA 4Z0OA 3FJUB 3FEHA 3O47A 3KDEC 2CONA 3LVQE 4F1PA 2CRRA 2EXUA 3LDYA 3E2DA 2YREA 3DDTA 4OGEA 2OWAA 2XOZA 2XP0A 1DCQA 3PLWA 2E61A 3MDBC 2JUNA 4Z0RA 5SVIA 2LAUA 2P57A 3SUBA 2DJAA 3M7KA 2XOYA 4O62A 3Q1DA 2EGMA 3T9KA 2YVRA 2MKEA 2JM3A 2KKXA 5K3QA 2CRWA 4QQ4A 4OGCA 3DWDA 2B0OE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L7P A;  4Z0O A;  4Z0R A;  2E61 A;  5SVI A;  5SVX A;  5SVI B;  4QQ4 A;  2RR4 A;  5SVY A;  4O62 A; 
#chains in the Genus database with same CATH topology
 5SVX A;  5AIU A;  2XB1 A;  2XOC A;  2ECV A;  2VJE B;  2KKY A;  2YQM A;  4FIP A;  1HYJ A;  2YRE A;  4N3W A;  5D1L B;  2JMD A;  1MM2 A;  3SUB A;  4YAD A;  4O62 A;  1X4J A;  3FAO A;  1LDJ B;  3N9N A;  3FM8 C;  2YT5 A;  2KWJ A;  2L7P A;  3GV4 A;  2KYU A;  4H9D A;  2YHO A;  3C5K A;  5G05 B;  2CRR A;  5G0F A;  2KRE A;  2MA5 A;  2LDR A;  4PPE A;  5B79 A;  2LGL A;  3IHP A;  1X4I A;  2HDP A;  2H0D A;  3LQI A;  2KWN A;  1WGM A;  3L11 A;  3PUR A;  5B75 A;  4ZQL A;  2XP0 A;  3U5O A;  4TKP B;  5LCW B;  4C9Z A;  2VJF A;  2LRI C;  2LXH C;  4B86 C;  4ZUX U;  3U5P A;  2IDA A;  2DX8 A;  2E61 A;  2ECT A;  3KQI A;  1VFY A;  2ECN A;  3FAN A;  2VNF A;  3O35 A;  3Q1D A;  4BBQ A;  5TDR A;  2QIC A;  3SOU A;  2ZET C;  3O70 A;  2DSM A;  4MVT A;  3NG2 A;  3O34 A;  3LQH A;  2G43 A;  2H0D B;  2JRJ A;  2L43 A;  2LV9 A;  4WZ0 A;  1N87 A;  5TAB A;  4F1P A;  1WEU A;  2F6J A;  3HCU A;  3L1Z B;  2MD7 B;  2D8S A;  4A4C A;  2VJF B;  5B76 A;  4A49 A;  2XOY A;  4CCG X;  2JMJ A;  2E6S A;  2Y1N A;  3EB6 A;  3N9M A;  3T9K A;  2Y43 A;  4LJN A;  3SOX A;  3O36 A;  5EYA F;  4V3L C;  1WEV A;  4QF3 A;  4ZDT A;  2MT5 A;  2LXP C;  3LVR E;  2K17 A;  2LGV A;  3FJU B;  3O47 A;  2CON A;  2M1R A;  2EOD A;  2Y1M A;  5G04 B;  4WZ2 A;  2JMI A;  4GND A;  3GL6 A;  3U5M A;  4W4U A;  2YUR A;  4YBT A;  1WEO A;  2B0O E;  5AIT A;  4YC9 A;  1E4U A;  4XI1 A;  3KV5 A;  1Z6U A;  4Z0O A;  1Z60 A;  5LKT A;  3N9L A;  4GNG A;  3M62 A;  2L5U A;  3U5N A;  3E2D A;  2VPB A;  3C6W A;  4LK9 A;  3T7L A;  4WA6 A;  3PHD A;  3RPG B;  2UZG A;  1WIL A;  4X3G A;  5FER A;  4A4B A;  3H7H A;  4V3K C;  1RMD A;  2CSV A;  1JOC A;  3HCS A;  4UI9 B;  2M85 A;  2PUY A;  4GB0 A;  4FK5 A;  3N9P A;  4F52 B;  2FUI A;  3VK6 A;  3LQJ A;  3M99 A;  3ZVZ B;  1WES A;  1Z2Q A;  1WIM A;  2YSM A;  3ZPV E;  3O37 A;  5FB0 A;  5D1K B;  5LKZ A;  1WEW A;  3LJU X;  2D8U A;  2C2V S;  2HYE D;  3ZPV 1;  3KDE C;  2YSJ A;  1U6G B;  4AVX A;  3RPG C;  2L0B A;  1BOR A;  3FL2 A;  2KE1 A;  2ECJ A;  2P57 A;  5H1T A;  1MBM A;  5JG6 A;  5J3X A;  4FO9 A;  2C2L A;  2JM3 A;  2OXQ C;  4L7X A;  4R2Y A;  3V43 A;  4OGC A;  2KIZ A;  3ASL A;  4WZ3 B;  5SVY A;  5KH3 A;  2LQ6 A;  2YUC A;  3EB5 A;  4CA1 A;  2YHN A;  5TDW A;  3MHH A;  2KGG A;  4I7D A;  2VPD A;  4GNF A;  2MNZ A;  4R7E A;  2EXU A;  1HYI A;  2OWA A;  4YAT A;  3SHB A;  2K4D A;  1JM7 A;  1WE9 A;  2KWO A;  2CRW A;  4AP4 A;  4QF2 A;  2CSZ A;  4GNE A;  2VP7 A;  2VPE A;  1VYX A;  5I3L A;  4A0C D;  3I2D A;  3N9Q A;  3LVQ E;  2M3H A;  5C11 A;  1WEP A;  2FUU A;  4LLB A;  2QIZ A;  2ECI A;  2G45 A;  4IC2 A;  3RTR B;  4N4F A;  2L80 A;  2YQL A;  2RSD A;  4MSX A;  4YBM A;  2VPG A;  2K16 A;  4YAX A;  2CKL A;  2YW8 A;  2LGG A;  3DWD A;  2RI7 A;  4YAB A;  1JM7 B;  1F62 A;  2BAY A;  2EGP A;  3MHS A;  3DDT A;  3HTK C;  4P5O B;  2F42 A;  2XOZ A;  4Z0R A;  2YYR A;  3MDB C;  2ECW A;  1K2F A;  1WEQ A;  1T1H A;  3L1X A;  5FB1 A;  4QQ4 A;  1DVP A;  5TBN A;  1MM3 A;  1LDK C;  2M13 A;  2CKL B;  2KFT A;  4Q6F A;  5D1M B;  1WEE A;  2G6Q A;  2KR4 A;  2KGI A;  3ZTG A;  4O64 A;  5SVI A;  2JUN A;  2LAU A;  3DPL R;  2MIQ A;  3KNV A;  2M6M A;  1WEN A;  2F6N A;  4AUQ B;  2FD4 A;  3QZV A;  2K1J A;  2MA6 A;  2PNX A;  2IQJ A;  5TRB A;  2FSA A;  3ZVY A;  5LKX A;  2KU3 A;  3LDY A;  5B78 A;  2MD8 C;  4OGE A;  3M63 A;  4S3O B;  2LGK A;  4B7Y C;  2QJ0 A;  2MNY A;  2KKX A;  4IC3 A;  5K3Q A;  5SVI B;  4AYC A;  5FEY A;  5H9M A;  4R8P K;  4I7C A;  2CT2 A;  5H1V A;  2ECG A;  2NAA A;  2EA6 A;  3N9O A;  4NN2 A;  1WEM A;  1XWH A;  1IYM A;  1DCQ A;  4LKA A;  2DJA A;  1X4U A;  1VD4 A;  5C13 A;  1G25 A;  2EGM A;  3ZYQ A;  3O33 A;  4YBS A;  5B8D A;  2MUM A;  3JUE A;  4PTB A;  2RR4 A;  4S3O C;  5KH9 A;  3HCT A;  4AYC B;  2I50 A;  3FEH A;  4BHW A;  1FP0 A;  4FJC A;  1ZBD B;  5LKU A;  3O7A A;  1FBV A;  2AN6 A;  2E6R A;  3M7K A;  2KWK A;  2VJE A;  4UP0 A;  4UP5 A;  3DQV R;  1V87 A;  5DKA A;  4I7B A;  3T6R A;  1CHC A;  2LN0 A;  3SOW A;  2L75 A;  2FFW A;  5KH7 A;  3PUQ A;  3PLW A;  4L58 A;  5B77 A;  4LAD B;  2XEU A;  5DIN A;  2CSY A;  1WFK A;  3KV6 A;  2YVR A;  2MKE A;  5H1U A;  3ZNI A;  2YU4 A;  3LRQ A; 
#chains in the Genus database with same CATH homology
 3LJU X;  3H7H A;  2FD4 A;  3JUE A;  2D8U A;  5SVX A;  2CSV A;  2M13 A;  5SVI B;  2XOC A;  5SVY A;  2KKY A;  2RR4 A;  3FM8 C;  2L7P A;  3LVR E;  4H9D A;  2FFW A;  2IQJ A;  4Z0O A;  3FJU B;  3FEH A;  3O47 A;  3KDE C;  2CON A;  3LVQ E;  4F1P A;  2CRR A;  2EXU A;  3LDY A;  3E2D A;  2YRE A;  3DDT A;  4OGE A;  2OWA A;  2XOZ A;  2XP0 A;  1DCQ A;  3PLW A;  2E61 A;  3MDB C;  2JUN A;  4Z0R A;  5SVI A;  2LAU A;  2P57 A;  3SUB A;  2DJA A;  3M7K A;  2XOY A;  4O62 A;  3Q1D A;  2EGM A;  3T9K A;  2YVR A;  2MKE A;  2JM3 A;  2KKX A;  5K3Q A;  2CRW A;  4QQ4 A;  4OGC A;  3DWD A;  2B0O E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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