2E61A

Solution structure of the zf-cw domain in zinc finger cw-type pwwp domain protein 1
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
69
structure length
69
Chain Sequence
GSSGSSGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTGLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Homo sapiens
publication title Structural insight into the zinc finger CW domain as a histone modification reader
pubmed doi rcsb
molecule keywords Zinc finger CW-type PWWP domain protein 1
total genus 4
structure length 69
sequence length 69
ec nomenclature
pdb deposition date 2006-12-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07496 zf-CW CW-type Zinc Finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.100 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2e61A00
5SVXA 5SVIB 4O62A 2RR4A 4Z0RA 2L7PA 4QQ4A 4Z0OA 2E61A 5SVIA 5SVYA
chains in the Genus database with same CATH superfamily
1WEWA 2RSDA 2EODA 4F1PA 2HDPA 3RPGB 4I7BA 3RPGC 4BBQA 4R8PK 3DQVR 5B8DA 2EGPA 2E6SA 2EXUA 2VPDA 4LK9A 5B79A 2P57A 2CKLB 2LV9A 1FBVA 4ZUXU 2KWKA 4AVXA 2MNYA 2L43A 5B75A 2QJ0A 3HCTA 2CRRA 1WESA 4QF2A 2Y1MA 2YVRA 2JM3A 1WEMA 5SVYA 4YABA 1WEQA 3MDBC 3T7LA 2H0DB 1WGMA 2XB1A 4FJCA 3EB6A 3FM8C 2LDRA 4A49A 2JUNA 5H1VA 1JOCA 2LQ6A 3RTRB 3DDTA 4OGEA 2YSJA 2IDAA 3NG2A 2MKEA 3IHPA 1LDJB 2VJFB 5H1UA 5B78A 2K1JA 2KWOA 3HCUA 3LDYA 4X3GA 5DKAA 3LQJA 2JMIA 5H1TA 2VJEA 4F52B 2K4DA 4S3OC 5I3LA 1Z6UA 2FD4A 4AP4A 4YC9A 3PLWA 4CCGX 5J3XA 2K17A 2BAYA 5SVIA 4N4FA 2ZETC 2ECIA 3KV5A 2XP0A 2CSYA 2YHOA 3T6RA 5FB0A 2KE1A 5G05B 1X4IA 2LGKA 2QIZA 2M13A 2D8SA 4FK5A 3N9MA 5FERA 2C2LA 4GNFA 3LVRE 2KWNA 2XEUA 3O35A 1WIMA 1WEVA 1IYMA 5G0FA 4C9ZA 2KR4A 3FJUB 2LGVA 3C6WA 2NAAA 2C2VS 4I7CA 2F42A 5KH9A 1JM7A 2MUMA 1VYXA 3E2DA 4XI1A 4AYCA 2YQMA 3L11A 3LRQA 5LKXA 3ASLA 3C5KA 1K2FA 4O64A 2MIQA 4TKPB 2KYUA 2MNZA 4IC2A 3SOWA 3ZPV1 1VD4A 2PUYA 4L58A 2CONA 2JRJA 2RR4A 3JUEA 2FFWA 1T1HA 5SVIB 2YU4A 2ECGA 2G6QA 5JG6A 1WE9A 5D1LB 3ZYQA 5TABA 2FUIA 3GV4A 4Z0OA 2YYRA 2YREA 3O7AA 3ZVZB 3M63A 3MHHA 2G43A 5LKZA 1DVPA 5TBNA 4IC3A 5AITA 4YATA 1G25A 5LKTA 2L0BA 4PPEA 3SOXA 4MVTA 1HYJA 3QZVA 3ZPVE 1Z2QA 4AYCB 3H7HA 2M85A 1XWHA 2L7PA 2XOCA 3U5MA 1X4UA 1U6GB 2CSZA 5C13A 2YSMA 5H9MA 2OWAA 1RMDA 1MM3A 2DJAA 5B76A 3I2DA 2L75A 1BORA 2UZGA 5EYAF 3FANA 5LKUA 2MA6A 5C11A 3LQHA 2ECJA 1V87A 4A4BA 3SUBA 4S3OB 2YHNA 3HTKC 4A4CA 1E4UA 2JMJA 4WZ3B 4R2YA 3LJUX 4GB0A 5AIUA 2RI7A 4W4UA 4UI9B 2HYED 3M99A 3KQIA 3FEHA 4OGCA 3M7KA 2ECTA 3ZTGA 2MD8C 1LDKC 4V3LC 3LQIA 5DINA 2YQLA 2YW8A 2K16A 1WEEA 4Q6FA 2YT5A 2KKYA 4YADA 4YBMA 5D1KB 2KFTA 2KIZA 4WZ2A 2DSMA 2OXQC 4B7YC 4UP0A 4LADB 4MSXA 4O62A 4BHWA 2ECWA 4GNGA 2VPEA 3KNVA 4GNDA 2M3HA 2VJEB 3PUQA 4L7XA 2LAUA 2KGIA 2M1RA 2F6JA 5KH7A 2MA5A 2EA6A 2KGGA 2PNXA 2F6NA 4P5OB 3U5PA 1HYIA 3EB5A 4A0CD 4CA1A 4I7DA 4QF3A 4Z0RA 1WEPA 2E6RA 3O37A 3N9PA 2KWJA 4H9DA 3O36A 2VJFA 3O33A 4ZDTA 2QICA 1MBMA 2LRIC 4WA6A 1DCQA 4UP5A 2KKXA 1WEUA 2M6MA 3U5NA 3U5OA 4N3WA 2LGLA 1WEOA 2VNFA 1JM7B 3KV6A 3DPLR 4YBSA 1WILA 4LLBA 2YUCA 3LVQE 5TDWA 2FUUA 2KU3A 2LGGA 4LKAA 1CHCA 3N9NA 3N9OA 4FO9A 2DX8A 2LXHC 3DWDA 2E61A 5SVXA 1N87A 3V43A 2CRWA 1ZBDB 5FEYA 5G04B 3MHSA 3N9QA 2B0OE 4ZQLA 4WZ0A 5K3QA 1F62A 2ECVA 5KH3A 2KREA 2XOZA 2LN0A 3O47A 4AUQB 2IQJA 2L5UA 3Q1DA 3HCSA 4PTBA 1WENA 2MT5A 1X4JA 4V3KC 4GNEA 2CSVA 3O34A 2YURA 2ECNA 1FP0A 2MD7B 2JMDA 3PURA 2Y43A 4LJNA 3L1XA 2CT2A 3SHBA 2G45A 4YBTA 3PHDA 4R7EA 2CKLA 2EGMA 3L1ZB 4NN2A 2FSAA 3T9KA 3GL6A 2XOYA 2I50A 1VFYA 3ZNIA 5TRBA 3SOUA 3M62A 2VP7A 5D1MB 3O70A 3KDEC 4QQ4A 3N9LA 2VPGA 2AN6A 4B86C 1MM2A 5TDRA 2H0DA 3FAOA 2VPBA 5LCWB 1Z60A 5B77A 4FIPA 4YAXA 2Y1NA 3FL2A 5FB1A 2L80A 1WFKA 2LXPC 2D8UA 3VK6A 3ZVYA
chains in the Genus database with same CATH topology
2B0OE 3LVQE 2FD4A 3LVRE 4F1PA 2CRRA 2LAUA 4H9DA 5K3QA 3PLWA 3DDTA 4OGEA 3KDEC 4QQ4A 2OWAA 2KKYA 2XOZA 2JM3A 2YVRA 5SVYA 2MKEA 2DJAA 1DCQA 2CONA 2KKXA 2RR4A 3JUEA 2IQJA 3LJUX 3FJUB 3MDBC 3O47A 2FFWA 5SVIA 3LDYA 3Q1DA 2EXUA 5SVIB 2XP0A 4O62A 3DWDA 3E2DA 2EGMA 3FEHA 3FM8C 2E61A 4OGCA 3T9KA 2P57A 2XOYA 2CSVA 5SVXA 2JUNA 2M13A 3M7KA 2CRWA 3H7HA 4Z0RA 3SUBA 2D8UA 2L7PA 4Z0OA 2XOCA 2YREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5SVX A;  5SVI B;  4O62 A;  2RR4 A;  4Z0R A;  2L7P A;  4QQ4 A;  4Z0O A;  2E61 A;  5SVI A;  5SVY A; 
#chains in the Genus database with same CATH topology
 1WEW A;  2RSD A;  2EOD A;  4F1P A;  2HDP A;  3RPG B;  4I7B A;  3RPG C;  4BBQ A;  4R8P K;  3DQV R;  5B8D A;  2EGP A;  2E6S A;  2EXU A;  2VPD A;  4LK9 A;  5B79 A;  2P57 A;  2CKL B;  2LV9 A;  1FBV A;  4ZUX U;  2KWK A;  4AVX A;  2MNY A;  2L43 A;  5B75 A;  2QJ0 A;  3HCT A;  2CRR A;  1WES A;  4QF2 A;  2Y1M A;  2YVR A;  2JM3 A;  1WEM A;  5SVY A;  4YAB A;  1WEQ A;  3MDB C;  3T7L A;  2H0D B;  1WGM A;  2XB1 A;  4FJC A;  3EB6 A;  3FM8 C;  2LDR A;  4A49 A;  2JUN A;  5H1V A;  1JOC A;  2LQ6 A;  3RTR B;  3DDT A;  4OGE A;  2YSJ A;  2IDA A;  3NG2 A;  2MKE A;  3IHP A;  1LDJ B;  2VJF B;  5H1U A;  5B78 A;  2K1J A;  2KWO A;  3HCU A;  3LDY A;  4X3G A;  5DKA A;  3LQJ A;  2JMI A;  5H1T A;  2VJE A;  4F52 B;  2K4D A;  4S3O C;  5I3L A;  1Z6U A;  2FD4 A;  4AP4 A;  4YC9 A;  3PLW A;  4CCG X;  5J3X A;  2K17 A;  2BAY A;  5SVI A;  4N4F A;  2ZET C;  2ECI A;  3KV5 A;  2XP0 A;  2CSY A;  2YHO A;  3T6R A;  5FB0 A;  2KE1 A;  5G05 B;  1X4I A;  2LGK A;  2QIZ A;  2M13 A;  2D8S A;  4FK5 A;  3N9M A;  5FER A;  2C2L A;  4GNF A;  3LVR E;  2KWN A;  2XEU A;  3O35 A;  1WIM A;  1WEV A;  1IYM A;  5G0F A;  4C9Z A;  2KR4 A;  3FJU B;  2LGV A;  3C6W A;  2NAA A;  2C2V S;  4I7C A;  2F42 A;  5KH9 A;  1JM7 A;  2MUM A;  1VYX A;  3E2D A;  4XI1 A;  4AYC A;  2YQM A;  3L11 A;  3LRQ A;  5LKX A;  3ASL A;  3C5K A;  1K2F A;  4O64 A;  2MIQ A;  4TKP B;  2KYU A;  2MNZ A;  4IC2 A;  3SOW A;  3ZPV 1;  1VD4 A;  2PUY A;  4L58 A;  2CON A;  2JRJ A;  2RR4 A;  3JUE A;  2FFW A;  1T1H A;  5SVI B;  2YU4 A;  2ECG A;  2G6Q A;  5JG6 A;  1WE9 A;  5D1L B;  3ZYQ A;  5TAB A;  2FUI A;  3GV4 A;  4Z0O A;  2YYR A;  2YRE A;  3O7A A;  3ZVZ B;  3M63 A;  3MHH A;  2G43 A;  5LKZ A;  1DVP A;  5TBN A;  4IC3 A;  5AIT A;  4YAT A;  1G25 A;  5LKT A;  2L0B A;  4PPE A;  3SOX A;  4MVT A;  1HYJ A;  3QZV A;  3ZPV E;  1Z2Q A;  4AYC B;  3H7H A;  2M85 A;  1XWH A;  2L7P A;  2XOC A;  3U5M A;  1X4U A;  1U6G B;  2CSZ A;  5C13 A;  2YSM A;  5H9M A;  2OWA A;  1RMD A;  1MM3 A;  2DJA A;  5B76 A;  3I2D A;  2L75 A;  1BOR A;  2UZG A;  5EYA F;  3FAN A;  5LKU A;  2MA6 A;  5C11 A;  3LQH A;  2ECJ A;  1V87 A;  4A4B A;  3SUB A;  4S3O B;  2YHN A;  3HTK C;  4A4C A;  1E4U A;  2JMJ A;  4WZ3 B;  4R2Y A;  3LJU X;  4GB0 A;  5AIU A;  2RI7 A;  4W4U A;  4UI9 B;  2HYE D;  3M99 A;  3KQI A;  3FEH A;  4OGC A;  3M7K A;  2ECT A;  3ZTG A;  2MD8 C;  1LDK C;  4V3L C;  3LQI A;  5DIN A;  2YQL A;  2YW8 A;  2K16 A;  1WEE A;  4Q6F A;  2YT5 A;  2KKY A;  4YAD A;  4YBM A;  5D1K B;  2KFT A;  2KIZ A;  4WZ2 A;  2DSM A;  2OXQ C;  4B7Y C;  4UP0 A;  4LAD B;  4MSX A;  4O62 A;  4BHW A;  2ECW A;  4GNG A;  2VPE A;  3KNV A;  4GND A;  2M3H A;  2VJE B;  3PUQ A;  4L7X A;  2LAU A;  2KGI A;  2M1R A;  2F6J A;  5KH7 A;  2MA5 A;  2EA6 A;  2KGG A;  2PNX A;  2F6N A;  4P5O B;  3U5P A;  1HYI A;  3EB5 A;  4A0C D;  4CA1 A;  4I7D A;  4QF3 A;  4Z0R A;  1WEP A;  2E6R A;  3O37 A;  3N9P A;  2KWJ A;  4H9D A;  3O36 A;  2VJF A;  3O33 A;  4ZDT A;  2QIC A;  1MBM A;  2LRI C;  4WA6 A;  1DCQ A;  4UP5 A;  2KKX A;  1WEU A;  2M6M A;  3U5N A;  3U5O A;  4N3W A;  2LGL A;  1WEO A;  2VNF A;  1JM7 B;  3KV6 A;  3DPL R;  4YBS A;  1WIL A;  4LLB A;  2YUC A;  3LVQ E;  5TDW A;  2FUU A;  2KU3 A;  2LGG A;  4LKA A;  1CHC A;  3N9N A;  3N9O A;  4FO9 A;  2DX8 A;  2LXH C;  3DWD A;  2E61 A;  5SVX A;  1N87 A;  3V43 A;  2CRW A;  1ZBD B;  5FEY A;  5G04 B;  3MHS A;  3N9Q A;  2B0O E;  4ZQL A;  4WZ0 A;  5K3Q A;  1F62 A;  2ECV A;  5KH3 A;  2KRE A;  2XOZ A;  2LN0 A;  3O47 A;  4AUQ B;  2IQJ A;  2L5U A;  3Q1D A;  3HCS A;  4PTB A;  1WEN A;  2MT5 A;  1X4J A;  4V3K C;  4GNE A;  2CSV A;  3O34 A;  2YUR A;  2ECN A;  1FP0 A;  2MD7 B;  2JMD A;  3PUR A;  2Y43 A;  4LJN A;  3L1X A;  2CT2 A;  3SHB A;  2G45 A;  4YBT A;  3PHD A;  4R7E A;  2CKL A;  2EGM A;  3L1Z B;  4NN2 A;  2FSA A;  3T9K A;  3GL6 A;  2XOY A;  2I50 A;  1VFY A;  3ZNI A;  5TRB A;  3SOU A;  3M62 A;  2VP7 A;  5D1M B;  3O70 A;  3KDE C;  4QQ4 A;  3N9L A;  2VPG A;  2AN6 A;  4B86 C;  1MM2 A;  5TDR A;  2H0D A;  3FAO A;  2VPB A;  5LCW B;  1Z60 A;  5B77 A;  4FIP A;  4YAX A;  2Y1N A;  3FL2 A;  5FB1 A;  2L80 A;  1WFK A;  2LXP C;  2D8U A;  3VK6 A;  3ZVY A; 
#chains in the Genus database with same CATH homology
 2B0O E;  3LVQ E;  2FD4 A;  3LVR E;  4F1P A;  2CRR A;  2LAU A;  4H9D A;  5K3Q A;  3PLW A;  3DDT A;  4OGE A;  3KDE C;  4QQ4 A;  2OWA A;  2KKY A;  2XOZ A;  2JM3 A;  2YVR A;  5SVY A;  2MKE A;  2DJA A;  1DCQ A;  2CON A;  2KKX A;  2RR4 A;  3JUE A;  2IQJ A;  3LJU X;  3FJU B;  3MDB C;  3O47 A;  2FFW A;  5SVI A;  3LDY A;  3Q1D A;  2EXU A;  5SVI B;  2XP0 A;  4O62 A;  3DWD A;  3E2D A;  2EGM A;  3FEH A;  3FM8 C;  2E61 A;  4OGC A;  3T9K A;  2P57 A;  2XOY A;  2CSV A;  5SVX A;  2JUN A;  2M13 A;  3M7K A;  2CRW A;  3H7H A;  4Z0R A;  3SUB A;  2D8U A;  2L7P A;  4Z0O A;  2XOC A;  2YRE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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