5K3QA

Rhesus macaques trim5alpha bbox2 domain
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
43
structure length
43
Chain Sequence
VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Macaca mulatta
publication title Crystal structure of the Trim5 alpha Bbox2 domain from rhesus macaques describes a plastic oligomerisation interface.
pubmed doi rcsb
molecule keywords Tripartite motif-containing protein 5,Tripartite motif-conta
total genus 11
structure length 43
sequence length 43
chains with identical sequence B, C, D
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2016-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 5k3qA00
2D8UA 5K3QA 2JUNA 3DDTA 3Q1DA 2YVRA 2DJAA 2EGMA 2CSVA
chains in the Genus database with same CATH superfamily
2MUMA 3C6WA 4GNFA 2VP7A 2EGPA 1RMDA 4LK9A 5DINA 2RR4A 2XOCA 5TBNA 2FFWA 4PPEA 3LJUX 4ZQLA 2YREA 1T1HA 2CRWA 2CSYA 4MVTA 2XP0A 3HTKC 1FP0A 2LXPC 4A4BA 4QQ4A 1X4UA 3LRQA 4Z0RA 2E6SA 2UZGA 3KNVA 1WFKA 2ECNA 1MM2A 2VJFB 4YAXA 2F6JA 2LGLA 1K2FA 3SOUA 2G43A 5H1VA 3U5PA 2VPEA 4OGCA 4XI1A 2NAAA 3LQIA 4IC3A 5D1KB 2VJEA 3PURA 1WE9A 4W4UA 4YABA 2KYUA 4Q6FA 4UP5A 5LKUA 5FERA 2RSDA 4NN2A 2CSZA 3DDTA 2JMJA 2KU3A 3N9PA 3Q1DA 2DSMA 2JRJA 3KV5A 5LKXA 5H9MA 2CT2A 2M3HA 3EB5A 4C9ZA 2ECJA 3GL6A 2ECVA 1U6GB 1X4IA 2YVRA 4WZ3B 3JUEA 3I2DA 4R8PK 2RI7A 3KDEC 2XB1A 2PNXA 2OWAA 2KR4A 4FJCA 5LKTA 3FAOA 2ZETC 5FEYA 1MBMA 3O37A 1HYIA 4GNGA 4Z0OA 3FL2A 3O34A 4WZ2A 4WA6A 1VD4A 2FUIA 3ZVYA 2K4DA 3VK6A 4YBSA 2IQJA 2MD8C 3PUQA 2QIZA 3KV6A 2XOZA 2VPBA 4A49A 2LQ6A 3N9OA 5B76A 2YSJA 3V43A 1HYJA 4MSXA 3HCSA 5B78A 4AVXA 1WILA 2LXHC 2VJEB 2YW8A 5B75A 1G25A 2YT5A 2D8UA 5B8DA 4ZDTA 3HCUA 1CHCA 1WEQA 3ZNIA 1BORA 3ZPV1 2ECGA 2K17A 1WIMA 2Y43A 4ZUXU 2I50A 2CRRA 4QF2A 5EYAF 4AYCA 3HCTA 2VPGA 2LGGA 2E6RA 2YU4A 4UI9B 2L43A 3PLWA 4QF3A 3RTRB 3L1ZB 2IDAA 2YQMA 3ASLA 2BAYA 2L7PA 1WEPA 1E4UA 1Z60A 3N9NA 2Y1MA 1DVPA 2F6NA 3O35A 5G05B 5SVYA 2EA6A 1WEUA 2MNZA 4N4FA 2YUCA 2MKEA 5C11A 2KE1A 2QICA 1DCQA 2Y1NA 4I7CA 2H0DA 1FBVA 1IYMA 3M63A 3M99A 5DKAA 2JMIA 2QJ0A 1VFYA 3SOWA 4BBQA 3O7AA 3ZYQA 2E61A 2D8SA 2FD4A 5B77A 2G6QA 3N9LA 4L58A 4R7EA 2LDRA 5J3XA 2KKXA 4LADB 2XEUA 3MDBC 3SHBA 5AIUA 5LCWB 5K3QA 3MHSA 3U5NA 3O47A 2JMDA 5KH3A 1WEEA 3KQIA 2YHNA 1V87A 3SUBA 2MA6A 2K1JA 3DQVR 2ECIA 4IC2A 4LJNA 2OXQC 4AYCB 2DJAA 2L0BA 5SVIA 5AITA 1Z2QA 4BHWA 4FIPA 3RPGC 2CKLA 4B7YC 2M6MA 4LLBA 3FJUB 2C2LA 4B86C 5FB0A 2MT5A 3EB6A 2ECTA 2KWJA 3RPGB 2KWNA 1LDJB 3LQHA 3M7KA 2L80A 2KFTA 5JG6A 5FB1A 4YATA 2H0DB 4I7BA 4YBTA 5KH9A 3FANA 5H1TA 4N3WA 2FUUA 2VPDA 2YSMA 1LDKC 4F1PA 2M13A 3DWDA 2ECWA 4AUQB 3L11A 1WEMA 4CA1A 2LN0A 2MIQA 4GNDA 4GNEA 3T7LA 3GV4A 2YHOA 3N9MA 4UP0A 4F52B 1MM3A 2KREA 4A4CA 2JUNA 1JM7A 1WESA 4I7DA 4PTBA 3O33A 5SVIB 3IHPA 2C2VS 3LVQE 2PUYA 5G04B 3C5KA 2LRIC 3LDYA 2LGKA 2LV9A 4WZ0A 2CKLB 4YADA 4LKAA 2MD7B 2KGIA 1WEVA 2JM3A 2EODA 2F42A 3NG2A 4H9DA 2YYRA 2G45A 2L5UA 2KIZA 5TRBA 3ZVZB 4R2YA 3QZVA 4FO9A 1WENA 5LKZA 3M62A 1XWHA 3FM8C 2LAUA 2HDPA 5D1LB 3DPLR 4CCGX 3E2DA 4O62A 3U5MA 2KKYA 4YBMA 2M85A 4P5OB 4YC9A 5TDRA 4GB0A 3U5OA 1WEWA 3O70A 3N9QA 3FEHA 2L75A 5B79A 3LVRE 2DX8A 4V3LC 5I3LA 5C13A 2CONA 1JM7B 2CSVA 3PHDA 4OGEA 2KWOA 1X4JA 4X3GA 4S3OC 2P57A 2EXUA 2M1RA 3L1XA 1F62A 2MNYA 2EGMA 5SVXA 4S3OB 1N87A 5TDWA 2VJFA 4O64A 3ZTGA 4L7XA 1WGMA 4FK5A 4AP4A 4TKPB 2KWKA 5H1UA 4A0CD 3LQJA 3T9KA 3O36A 3MHHA 3H7HA 2K16A 5KH7A 1ZBDB 2MA5A 3T6RA 2XOYA 2HYED 2LGVA 2VNFA 2B0OE 2KGGA 5G0FA 2AN6A 5D1MB 4V3KC 3ZPVE 2YQLA 1Z6UA 1VYXA 2YURA 2FSAA 5TABA 1JOCA 1WEOA 3SOXA
chains in the Genus database with same CATH topology
2OWAA 3H7HA 3LVQE 2L7PA 2E61A 3DDTA 2FD4A 3Q1DA 2DJAA 3FM8C 3FEHA 2EGMA 2LAUA 5SVIA 5SVXA 3M7KA 2RR4A 2XOCA 3LDYA 3LVRE 2FFWA 2CRRA 2XOYA 2B0OE 3LJUX 4Z0OA 2KKXA 2YREA 3E2DA 5SVYA 2CONA 4O62A 2CRWA 3MDBC 4OGCA 2CSVA 2XP0A 2D8UA 2KKYA 5K3QA 4OGEA 2JUNA 2MKEA 1DCQA 2JM3A 2YVRA 3O47A 4QQ4A 4H9DA 2IQJA 3JUEA 3PLWA 4F1PA 3FJUB 2M13A 3DWDA 4Z0RA 2P57A 2XOZA 2EXUA 3SUBA 3T9KA 3KDEC 5SVIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8U A;  5K3Q A;  2JUN A;  3DDT A;  3Q1D A;  2YVR A;  2DJA A;  2EGM A;  2CSV A; 
#chains in the Genus database with same CATH topology
 2MUM A;  3C6W A;  4GNF A;  2VP7 A;  2EGP A;  1RMD A;  4LK9 A;  5DIN A;  2RR4 A;  2XOC A;  5TBN A;  2FFW A;  4PPE A;  3LJU X;  4ZQL A;  2YRE A;  1T1H A;  2CRW A;  2CSY A;  4MVT A;  2XP0 A;  3HTK C;  1FP0 A;  2LXP C;  4A4B A;  4QQ4 A;  1X4U A;  3LRQ A;  4Z0R A;  2E6S A;  2UZG A;  3KNV A;  1WFK A;  2ECN A;  1MM2 A;  2VJF B;  4YAX A;  2F6J A;  2LGL A;  1K2F A;  3SOU A;  2G43 A;  5H1V A;  3U5P A;  2VPE A;  4OGC A;  4XI1 A;  2NAA A;  3LQI A;  4IC3 A;  5D1K B;  2VJE A;  3PUR A;  1WE9 A;  4W4U A;  4YAB A;  2KYU A;  4Q6F A;  4UP5 A;  5LKU A;  5FER A;  2RSD A;  4NN2 A;  2CSZ A;  3DDT A;  2JMJ A;  2KU3 A;  3N9P A;  3Q1D A;  2DSM A;  2JRJ A;  3KV5 A;  5LKX A;  5H9M A;  2CT2 A;  2M3H A;  3EB5 A;  4C9Z A;  2ECJ A;  3GL6 A;  2ECV A;  1U6G B;  1X4I A;  2YVR A;  4WZ3 B;  3JUE A;  3I2D A;  4R8P K;  2RI7 A;  3KDE C;  2XB1 A;  2PNX A;  2OWA A;  2KR4 A;  4FJC A;  5LKT A;  3FAO A;  2ZET C;  5FEY A;  1MBM A;  3O37 A;  1HYI A;  4GNG A;  4Z0O A;  3FL2 A;  3O34 A;  4WZ2 A;  4WA6 A;  1VD4 A;  2FUI A;  3ZVY A;  2K4D A;  3VK6 A;  4YBS A;  2IQJ A;  2MD8 C;  3PUQ A;  2QIZ A;  3KV6 A;  2XOZ A;  2VPB A;  4A49 A;  2LQ6 A;  3N9O A;  5B76 A;  2YSJ A;  3V43 A;  1HYJ A;  4MSX A;  3HCS A;  5B78 A;  4AVX A;  1WIL A;  2LXH C;  2VJE B;  2YW8 A;  5B75 A;  1G25 A;  2YT5 A;  2D8U A;  5B8D A;  4ZDT A;  3HCU A;  1CHC A;  1WEQ A;  3ZNI A;  1BOR A;  3ZPV 1;  2ECG A;  2K17 A;  1WIM A;  2Y43 A;  4ZUX U;  2I50 A;  2CRR A;  4QF2 A;  5EYA F;  4AYC A;  3HCT A;  2VPG A;  2LGG A;  2E6R A;  2YU4 A;  4UI9 B;  2L43 A;  3PLW A;  4QF3 A;  3RTR B;  3L1Z B;  2IDA A;  2YQM A;  3ASL A;  2BAY A;  2L7P A;  1WEP A;  1E4U A;  1Z60 A;  3N9N A;  2Y1M A;  1DVP A;  2F6N A;  3O35 A;  5G05 B;  5SVY A;  2EA6 A;  1WEU A;  2MNZ A;  4N4F A;  2YUC A;  2MKE A;  5C11 A;  2KE1 A;  2QIC A;  1DCQ A;  2Y1N A;  4I7C A;  2H0D A;  1FBV A;  1IYM A;  3M63 A;  3M99 A;  5DKA A;  2JMI A;  2QJ0 A;  1VFY A;  3SOW A;  4BBQ A;  3O7A A;  3ZYQ A;  2E61 A;  2D8S A;  2FD4 A;  5B77 A;  2G6Q A;  3N9L A;  4L58 A;  4R7E A;  2LDR A;  5J3X A;  2KKX A;  4LAD B;  2XEU A;  3MDB C;  3SHB A;  5AIU A;  5LCW B;  5K3Q A;  3MHS A;  3U5N A;  3O47 A;  2JMD A;  5KH3 A;  1WEE A;  3KQI A;  2YHN A;  1V87 A;  3SUB A;  2MA6 A;  2K1J A;  3DQV R;  2ECI A;  4IC2 A;  4LJN A;  2OXQ C;  4AYC B;  2DJA A;  2L0B A;  5SVI A;  5AIT A;  1Z2Q A;  4BHW A;  4FIP A;  3RPG C;  2CKL A;  4B7Y C;  2M6M A;  4LLB A;  3FJU B;  2C2L A;  4B86 C;  5FB0 A;  2MT5 A;  3EB6 A;  2ECT A;  2KWJ A;  3RPG B;  2KWN A;  1LDJ B;  3LQH A;  3M7K A;  2L80 A;  2KFT A;  5JG6 A;  5FB1 A;  4YAT A;  2H0D B;  4I7B A;  4YBT A;  5KH9 A;  3FAN A;  5H1T A;  4N3W A;  2FUU A;  2VPD A;  2YSM A;  1LDK C;  4F1P A;  2M13 A;  3DWD A;  2ECW A;  4AUQ B;  3L11 A;  1WEM A;  4CA1 A;  2LN0 A;  2MIQ A;  4GND A;  4GNE A;  3T7L A;  3GV4 A;  2YHO A;  3N9M A;  4UP0 A;  4F52 B;  1MM3 A;  2KRE A;  4A4C A;  2JUN A;  1JM7 A;  1WES A;  4I7D A;  4PTB A;  3O33 A;  5SVI B;  3IHP A;  2C2V S;  3LVQ E;  2PUY A;  5G04 B;  3C5K A;  2LRI C;  3LDY A;  2LGK A;  2LV9 A;  4WZ0 A;  2CKL B;  4YAD A;  4LKA A;  2MD7 B;  2KGI A;  1WEV A;  2JM3 A;  2EOD A;  2F42 A;  3NG2 A;  4H9D A;  2YYR A;  2G45 A;  2L5U A;  2KIZ A;  5TRB A;  3ZVZ B;  4R2Y A;  3QZV A;  4FO9 A;  1WEN A;  5LKZ A;  3M62 A;  1XWH A;  3FM8 C;  2LAU A;  2HDP A;  5D1L B;  3DPL R;  4CCG X;  3E2D A;  4O62 A;  3U5M A;  2KKY A;  4YBM A;  2M85 A;  4P5O B;  4YC9 A;  5TDR A;  4GB0 A;  3U5O A;  1WEW A;  3O70 A;  3N9Q A;  3FEH A;  2L75 A;  5B79 A;  3LVR E;  2DX8 A;  4V3L C;  5I3L A;  5C13 A;  2CON A;  1JM7 B;  2CSV A;  3PHD A;  4OGE A;  2KWO A;  1X4J A;  4X3G A;  4S3O C;  2P57 A;  2EXU A;  2M1R A;  3L1X A;  1F62 A;  2MNY A;  2EGM A;  5SVX A;  4S3O B;  1N87 A;  5TDW A;  2VJF A;  4O64 A;  3ZTG A;  4L7X A;  1WGM A;  4FK5 A;  4AP4 A;  4TKP B;  2KWK A;  5H1U A;  4A0C D;  3LQJ A;  3T9K A;  3O36 A;  3MHH A;  3H7H A;  2K16 A;  5KH7 A;  1ZBD B;  2MA5 A;  3T6R A;  2XOY A;  2HYE D;  2LGV A;  2VNF A;  2B0O E;  2KGG A;  5G0F A;  2AN6 A;  5D1M B;  4V3K C;  3ZPV E;  2YQL A;  1Z6U A;  1VYX A;  2YUR A;  2FSA A;  5TAB A;  1JOC A;  1WEO A;  3SOX A; 
#chains in the Genus database with same CATH homology
 2OWA A;  3H7H A;  3LVQ E;  2L7P A;  2E61 A;  3DDT A;  2FD4 A;  3Q1D A;  2DJA A;  3FM8 C;  3FEH A;  2EGM A;  2LAU A;  5SVI A;  5SVX A;  3M7K A;  2RR4 A;  2XOC A;  3LDY A;  3LVR E;  2FFW A;  2CRR A;  2XOY A;  2B0O E;  3LJU X;  4Z0O A;  2KKX A;  2YRE A;  3E2D A;  5SVY A;  2CON A;  4O62 A;  2CRW A;  3MDB C;  4OGC A;  2CSV A;  2XP0 A;  2D8U A;  2KKY A;  5K3Q A;  4OGE A;  2JUN A;  2MKE A;  1DCQ A;  2JM3 A;  2YVR A;  3O47 A;  4QQ4 A;  4H9D A;  2IQJ A;  3JUE A;  3PLW A;  4F1P A;  3FJU B;  2M13 A;  3DWD A;  4Z0R A;  2P57 A;  2XOZ A;  2EXU A;  3SUB A;  3T9K A;  3KDE C;  5SVI B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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