2D8UA

Solution structure of the b-box domain of the human tripartite motif-containing 63 protein
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
64
structure length
64
Chain Sequence
GSSGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
source organism Homo sapiens
publication title Solution structure of the B-box domain of the human tripartite motif-containing 63 protein
rcsb
molecule keywords Ubiquitin ligase TRIM63
total genus 5
structure length 64
sequence length 64
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2005-12-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2d8uA01
2EGMA 2D8UA 2JUNA 5K3QA 2DJAA 2YVRA 3DDTA 3Q1DA 2CSVA
chains in the Genus database with same CATH superfamily
4FIPA 2VJEA 3RTRB 4TKPB 2E61A 4I7DA 4GNDA 5D1LB 2VPEA 1XWHA 2LGLA 2VPGA 1WEVA 3O7AA 3M99A 2LGGA 3M7KA 4FJCA 2CKLB 3Q1DA 1VFYA 4V3KC 5G05B 5I3LA 2ECGA 2G43A 3ZTGA 4R8PK 1T1HA 2EODA 2LDRA 2OWAA 4Z0RA 4BBQA 3RPGC 4UP5A 3SHBA 3C6WA 4AYCB 3DQVR 2FFWA 2KWOA 5AITA 1E4UA 2YYRA 3SUBA 3KV5A 1Z2QA 2KWKA 2DJAA 3FANA 2B0OE 2L43A 2VPDA 1VYXA 4UI9B 3M62A 2F42A 1LDKC 4GNEA 1JM7A 3U5MA 4CCGX 5KH9A 2XOCA 5FEYA 5B76A 2YUCA 4UP0A 2M1RA 4AP4A 3N9LA 2FUUA 1DCQA 2RI7A 2L0BA 1Z6UA 1RMDA 2CRRA 4YC9A 3N9MA 1WGMA 2C2VS 3T7LA 3O47A 2I50A 4V3LC 3L1ZB 1X4IA 1WFKA 3MHHA 3MHSA 5DKAA 3SOUA 3HCTA 1X4JA 2Y1MA 2VJEB 2FUIA 4L58A 3FJUB 2ECNA 2YREA 1WEWA 4IC3A 2LGKA 2ECJA 2MIQA 3LVQE 4QF3A 1MM3A 2LXHC 2MKEA 3N9NA 5DINA 5H1VA 4W4UA 3JUEA 1BORA 3NG2A 3LJUX 5G04B 3ZYQA 2LQ6A 5KH3A 2M6MA 5B78A 3O33A 4F1PA 2JMDA 2YU4A 4WZ2A 2YT5A 3FEHA 3LVRE 2BAYA 3SOXA 2C2LA 3ZPVE 4X3GA 2NAAA 1JM7B 5KH7A 1WEOA 3U5PA 3DPLR 5D1MB 5D1KB 2L80A 4S3OB 3U5NA 5JG6A 4GNGA 5J3XA 4AUQB 3EB5A 3O36A 2LXPC 4YBMA 4O64A 2FD4A 4B7YC 2MNZA 4I7CA 4O62A 3H7HA 4A49A 2K4DA 3DDTA 3PURA 2CSYA 1WESA 2FSAA 5LKTA 2MA6A 3ZVYA 3PHDA 1WEQA 2H0DB 5B79A 3GV4A 2QIZA 2EA6A 3FL2A 3ZVZB 2PUYA 5LCWB 1WEPA 3N9QA 4XI1A 2KE1A 1F62A 1WEUA 3GL6A 3KQIA 4IC2A 4F52B 2DX8A 2CRWA 1U6GB 3E2DA 5FB1A 4H9DA 4WA6A 2KGGA 3LRQA 2UZGA 4B86C 3V43A 2D8SA 2RR4A 4R7EA 5EYAF 5TABA 3KV6A 1DVPA 5LKXA 5G0FA 2OXQC 4S3OC 2YSJA 2Y43A 3IHPA 3ASLA 1Z60A 3ZPV1 1WE9A 1MBMA 1IYMA 2EXUA 2H0DA 2YURA 2XB1A 4N3WA 3LDYA 5B75A 5C13A 2Y1NA 5SVIA 5FERA 3FM8C 4YABA 4YBSA 1LDJB 2XOYA 2L5UA 4LKAA 2YVRA 4YATA 2KGIA 3VK6A 4GNFA 1WEMA 2MA5A 4WZ3B 2MNYA 2EGPA 4NN2A 2MD7B 2HDPA 3O70A 3DWDA 4A4BA 2MUMA 2ECTA 2KYUA 2XEUA 1VD4A 3O35A 4OGCA 4LLBA 4FO9A 4ZDTA 2M85A 2EGMA 5LKUA 2CT2A 3HCSA 3PLWA 4YBTA 3N9OA 2JRJA 2IDAA 5C11A 4PTBA 4P5OB 2YHNA 2JUNA 2LRIC 1G25A 2ECWA 2YHOA 4LADB 4LK9A 4GB0A 1HYIA 3C5KA 4MVTA 3L1XA 4I7BA 2MD8C 2VNFA 2RSDA 3T9KA 3T6RA 4YADA 2IQJA 2CSZA 2D8UA 5TRBA 2ZETC 4MSXA 2E6RA 3LQIA 2KFTA 4Z0OA 5SVIB 2L75A 1JOCA 4Q6FA 4A4CA 2LAUA 4OGEA 2K1JA 2M3HA 4CA1A 5SVXA 2KR4A 2KWJA 2ECIA 4N4FA 2KKXA 2KU3A 2VJFA 1FP0A 2LV9A 2CSVA 5TDRA 3MDBC 3U5OA 1MM2A 2VP7A 5TDWA 5AIUA 3L11A 1K2FA 3HCUA 5B77A 2M13A 4QF2A 5H9MA 3FAOA 2XP0A 2F6JA 2HYED 4BHWA 5FB0A 2KIZA 2DSMA 2YQLA 3O34A 3EB6A 3O37A 2YQMA 4QQ4A 1HYJA 1WIMA 4FK5A 4L7XA 2CKLA 2CONA 3I2DA 2QJ0A 2ECVA 1FBVA 2JM3A 5K3QA 4PPEA 2AN6A 3SOWA 3QZVA 2G6QA 1WEEA 4ZQLA 2G45A 2XOZA 4AYCA 2P57A 3HTKC 1WENA 2KKYA 3KNVA 4AVXA 4LJNA 3RPGB 3LQHA 4C9ZA 1ZBDB 1WILA 2KWNA 2K17A 5B8DA 2LN0A 2LGVA 2F6NA 2E6SA 5H1TA 2K16A 2L7PA 1V87A 2PNXA 5TBNA 1N87A 2VPBA 3N9PA 3ZNIA 2KREA 2QICA 4WZ0A 2YW8A 1X4UA 3PUQA 4R2YA 2YSMA 5SVYA 3M63A 2MT5A 5LKZA 3KDEC 2VJFB 4ZUXU 3LQJA 1CHCA 4A0CD 2JMJA 2JMIA 5H1UA 4YAXA
chains in the Genus database with same CATH topology
2XP0A 2XOYA 2XOCA 3JUEA 2OWAA 2FD4A 2XOZA 2LAUA 2P57A 2YVRA 4OGEA 4Z0RA 2EGMA 2E61A 3LJUX 2KKYA 4O62A 3H7HA 2FFWA 3PLWA 3FJUB 3DDTA 5SVXA 1DCQA 4QQ4A 3SUBA 5SVYA 2CRWA 3T9KA 2EXUA 5SVIB 3M7KA 2YREA 3E2DA 2CONA 4OGCA 2KKXA 2DJAA 2CRRA 2B0OE 4F1PA 2IQJA 3Q1DA 4H9DA 3LDYA 2CSVA 3DWDA 3LVQE 3MDBC 3O47A 3KDEC 2D8UA 2JM3A 2JUNA 5K3QA 5SVIA 3FM8C 2MKEA 3FEHA 2RR4A 4Z0OA 3LVRE 2L7PA 2M13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGM A;  2D8U A;  2JUN A;  5K3Q A;  2DJA A;  2YVR A;  3DDT A;  3Q1D A;  2CSV A; 
#chains in the Genus database with same CATH topology
 4FIP A;  2VJE A;  3RTR B;  4TKP B;  2E61 A;  4I7D A;  4GND A;  5D1L B;  2VPE A;  1XWH A;  2LGL A;  2VPG A;  1WEV A;  3O7A A;  3M99 A;  2LGG A;  3M7K A;  4FJC A;  2CKL B;  3Q1D A;  1VFY A;  4V3K C;  5G05 B;  5I3L A;  2ECG A;  2G43 A;  3ZTG A;  4R8P K;  1T1H A;  2EOD A;  2LDR A;  2OWA A;  4Z0R A;  4BBQ A;  3RPG C;  4UP5 A;  3SHB A;  3C6W A;  4AYC B;  3DQV R;  2FFW A;  2KWO A;  5AIT A;  1E4U A;  2YYR A;  3SUB A;  3KV5 A;  1Z2Q A;  2KWK A;  2DJA A;  3FAN A;  2B0O E;  2L43 A;  2VPD A;  1VYX A;  4UI9 B;  3M62 A;  2F42 A;  1LDK C;  4GNE A;  1JM7 A;  3U5M A;  4CCG X;  5KH9 A;  2XOC A;  5FEY A;  5B76 A;  2YUC A;  4UP0 A;  2M1R A;  4AP4 A;  3N9L A;  2FUU A;  1DCQ A;  2RI7 A;  2L0B A;  1Z6U A;  1RMD A;  2CRR A;  4YC9 A;  3N9M A;  1WGM A;  2C2V S;  3T7L A;  3O47 A;  2I50 A;  4V3L C;  3L1Z B;  1X4I A;  1WFK A;  3MHH A;  3MHS A;  5DKA A;  3SOU A;  3HCT A;  1X4J A;  2Y1M A;  2VJE B;  2FUI A;  4L58 A;  3FJU B;  2ECN A;  2YRE A;  1WEW A;  4IC3 A;  2LGK A;  2ECJ A;  2MIQ A;  3LVQ E;  4QF3 A;  1MM3 A;  2LXH C;  2MKE A;  3N9N A;  5DIN A;  5H1V A;  4W4U A;  3JUE A;  1BOR A;  3NG2 A;  3LJU X;  5G04 B;  3ZYQ A;  2LQ6 A;  5KH3 A;  2M6M A;  5B78 A;  3O33 A;  4F1P A;  2JMD A;  2YU4 A;  4WZ2 A;  2YT5 A;  3FEH A;  3LVR E;  2BAY A;  3SOX A;  2C2L A;  3ZPV E;  4X3G A;  2NAA A;  1JM7 B;  5KH7 A;  1WEO A;  3U5P A;  3DPL R;  5D1M B;  5D1K B;  2L80 A;  4S3O B;  3U5N A;  5JG6 A;  4GNG A;  5J3X A;  4AUQ B;  3EB5 A;  3O36 A;  2LXP C;  4YBM A;  4O64 A;  2FD4 A;  4B7Y C;  2MNZ A;  4I7C A;  4O62 A;  3H7H A;  4A49 A;  2K4D A;  3DDT A;  3PUR A;  2CSY A;  1WES A;  2FSA A;  5LKT A;  2MA6 A;  3ZVY A;  3PHD A;  1WEQ A;  2H0D B;  5B79 A;  3GV4 A;  2QIZ A;  2EA6 A;  3FL2 A;  3ZVZ B;  2PUY A;  5LCW B;  1WEP A;  3N9Q A;  4XI1 A;  2KE1 A;  1F62 A;  1WEU A;  3GL6 A;  3KQI A;  4IC2 A;  4F52 B;  2DX8 A;  2CRW A;  1U6G B;  3E2D A;  5FB1 A;  4H9D A;  4WA6 A;  2KGG A;  3LRQ A;  2UZG A;  4B86 C;  3V43 A;  2D8S A;  2RR4 A;  4R7E A;  5EYA F;  5TAB A;  3KV6 A;  1DVP A;  5LKX A;  5G0F A;  2OXQ C;  4S3O C;  2YSJ A;  2Y43 A;  3IHP A;  3ASL A;  1Z60 A;  3ZPV 1;  1WE9 A;  1MBM A;  1IYM A;  2EXU A;  2H0D A;  2YUR A;  2XB1 A;  4N3W A;  3LDY A;  5B75 A;  5C13 A;  2Y1N A;  5SVI A;  5FER A;  3FM8 C;  4YAB A;  4YBS A;  1LDJ B;  2XOY A;  2L5U A;  4LKA A;  2YVR A;  4YAT A;  2KGI A;  3VK6 A;  4GNF A;  1WEM A;  2MA5 A;  4WZ3 B;  2MNY A;  2EGP A;  4NN2 A;  2MD7 B;  2HDP A;  3O70 A;  3DWD A;  4A4B A;  2MUM A;  2ECT A;  2KYU A;  2XEU A;  1VD4 A;  3O35 A;  4OGC A;  4LLB A;  4FO9 A;  4ZDT A;  2M85 A;  2EGM A;  5LKU A;  2CT2 A;  3HCS A;  3PLW A;  4YBT A;  3N9O A;  2JRJ A;  2IDA A;  5C11 A;  4PTB A;  4P5O B;  2YHN A;  2JUN A;  2LRI C;  1G25 A;  2ECW A;  2YHO A;  4LAD B;  4LK9 A;  4GB0 A;  1HYI A;  3C5K A;  4MVT A;  3L1X A;  4I7B A;  2MD8 C;  2VNF A;  2RSD A;  3T9K A;  3T6R A;  4YAD A;  2IQJ A;  2CSZ A;  2D8U A;  5TRB A;  2ZET C;  4MSX A;  2E6R A;  3LQI A;  2KFT A;  4Z0O A;  5SVI B;  2L75 A;  1JOC A;  4Q6F A;  4A4C A;  2LAU A;  4OGE A;  2K1J A;  2M3H A;  4CA1 A;  5SVX A;  2KR4 A;  2KWJ A;  2ECI A;  4N4F A;  2KKX A;  2KU3 A;  2VJF A;  1FP0 A;  2LV9 A;  2CSV A;  5TDR A;  3MDB C;  3U5O A;  1MM2 A;  2VP7 A;  5TDW A;  5AIU A;  3L11 A;  1K2F A;  3HCU A;  5B77 A;  2M13 A;  4QF2 A;  5H9M A;  3FAO A;  2XP0 A;  2F6J A;  2HYE D;  4BHW A;  5FB0 A;  2KIZ A;  2DSM A;  2YQL A;  3O34 A;  3EB6 A;  3O37 A;  2YQM A;  4QQ4 A;  1HYJ A;  1WIM A;  4FK5 A;  4L7X A;  2CKL A;  2CON A;  3I2D A;  2QJ0 A;  2ECV A;  1FBV A;  2JM3 A;  5K3Q A;  4PPE A;  2AN6 A;  3SOW A;  3QZV A;  2G6Q A;  1WEE A;  4ZQL A;  2G45 A;  2XOZ A;  4AYC A;  2P57 A;  3HTK C;  1WEN A;  2KKY A;  3KNV A;  4AVX A;  4LJN A;  3RPG B;  3LQH A;  4C9Z A;  1ZBD B;  1WIL A;  2KWN A;  2K17 A;  5B8D A;  2LN0 A;  2LGV A;  2F6N A;  2E6S A;  5H1T A;  2K16 A;  2L7P A;  1V87 A;  2PNX A;  5TBN A;  1N87 A;  2VPB A;  3N9P A;  3ZNI A;  2KRE A;  2QIC A;  4WZ0 A;  2YW8 A;  1X4U A;  3PUQ A;  4R2Y A;  2YSM A;  5SVY A;  3M63 A;  2MT5 A;  5LKZ A;  3KDE C;  2VJF B;  4ZUX U;  3LQJ A;  1CHC A;  4A0C D;  2JMJ A;  2JMI A;  5H1U A;  4YAX A; 
#chains in the Genus database with same CATH homology
 2XP0 A;  2XOY A;  2XOC A;  3JUE A;  2OWA A;  2FD4 A;  2XOZ A;  2LAU A;  2P57 A;  2YVR A;  4OGE A;  4Z0R A;  2EGM A;  2E61 A;  3LJU X;  2KKY A;  4O62 A;  3H7H A;  2FFW A;  3PLW A;  3FJU B;  3DDT A;  5SVX A;  1DCQ A;  4QQ4 A;  3SUB A;  5SVY A;  2CRW A;  3T9K A;  2EXU A;  5SVI B;  3M7K A;  2YRE A;  3E2D A;  2CON A;  4OGC A;  2KKX A;  2DJA A;  2CRR A;  2B0O E;  4F1P A;  2IQJ A;  3Q1D A;  4H9D A;  3LDY A;  2CSV A;  3DWD A;  3LVQ E;  3MDB C;  3O47 A;  3KDE C;  2D8U A;  2JM3 A;  2JUN A;  5K3Q A;  5SVI A;  3FM8 C;  2MKE A;  3FEH A;  2RR4 A;  4Z0O A;  3LVR E;  2L7P A;  2M13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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