3PLWA

Ref protein from p1 bacteriophage
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
110
structure length
110
Chain Sequence
GRTPTAEERRIANALGALPCIACYMHGVISNEVSLHHIAGRTAPGCHKKQLPLCRWHHQHAAPAEVREKYPWLVPVHADGVVGGKKEFTLLNKSEMELLADAYEMANIMH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacteria phage p1
publication title Creating Directed Double-strand Breaks with the Ref Protein: A NOVEL RecA-DEPENDENT NUCLEASE FROM BACTERIOPHAGE P1.
pubmed doi rcsb
molecule keywords Recombination enhancement function protein
total genus 30
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2010-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16786 RecA_dep_nuc Recombination enhancement, RecA-dependent nuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.190 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3plwA00
3PLWA
chains in the Genus database with same CATH superfamily
3M62A 3HCTA 3T6RA 2MNYA 4UI9B 2KWJA 3ZYQA 4XI1A 2LAUA 2G6QA 3KDEC 3FL2A 2XOZA 2EXUA 2OXQC 5FB1A 2VP7A 3U5OA 2Y1MA 1RMDA 2EGMA 4TKPB 4CCGX 3LQHA 3N9OA 2LDRA 3ZVZB 3MHHA 4WZ3B 2M13A 4AVXA 5B77A 2MT5A 1FBVA 4YADA 4BBQA 5B78A 5H1VA 3O70A 2K16A 3V43A 3M99A 5C11A 2QICA 4Z0OA 2HYED 2VPGA 2LXPC 2K17A 2YQLA 4A49A 3ASLA 5B79A 2ECVA 2YW8A 1VYXA 2BAYA 2KR4A 5LKUA 1F62A 1WGMA 3LQIA 3LJUX 1VD4A 3N9NA 3KV5A 3KV6A 2P57A 2F42A 2MD7B 4R2YA 1MM2A 4C9ZA 4ZUXU 2B0OE 2KKYA 2M1RA 5SVIA 2CKLA 3L1XA 4LJNA 2KKXA 5I3LA 1X4IA 1LDKC 3U5MA 5H9MA 2H0DA 2FUIA 1JOCA 3PHDA 4WZ2A 1WEWA 1BORA 2LXHC 1WFKA 3FM8C 4GNGA 2L43A 3N9PA 4MVTA 4LKAA 1VFYA 4GB0A 3T7LA 3GL6A 2M6MA 3RPGB 3L1ZB 4V3LC 2YVRA 2DX8A 3LRQA 2CT2A 3U5PA 1WEVA 2D8UA 2FFWA 4YABA 1WE9A 2CKLB 2JMDA 1ZBDB 2Y43A 2JM3A 2AN6A 5D1MB 5G04B 2E6SA 2VPDA 5TDWA 1WEUA 2VNFA 1WESA 4P5OB 2D8SA 3SHBA 2H0DB 2LV9A 2YREA 4WA6A 2LRIC 3LDYA 3ZPVE 2EODA 4YATA 4UP5A 2XP0A 1WEQA 5LKTA 5D1LB 5AITA 3C6WA 2ECWA 2LGKA 3SOXA 1HYIA 2KIZA 2VJFA 4YAXA 4CA1A 3NG2A 1XWHA 2XOYA 3M63A 4MSXA 3DPLR 2KFTA 2VPBA 2MA6A 4L7XA 4LK9A 5H1UA 5KH7A 2CRRA 5J3XA 2EGPA 2LGLA 1DCQA 4F1PA 4N3WA 4AUQB 2QJ0A 4H9DA 3FANA 2YYRA 2K1JA 2ECTA 2IDAA 2ECIA 2EA6A 3DWDA 1JM7A 3L11A 2JRJA 2LGVA 3QZVA 3SOUA 4AYCA 1T1HA 2DSMA 4O64A 2YHNA 3PURA 2VJFB 4FIPA 2YHOA 5FEYA 1X4UA 4GNEA 2MA5A 2KWNA 5FERA 4B86C 2VJEA 3HCSA 2FD4A 2MIQA 4BHWA 5LKXA 2JMJA 2C2VS 2UZGA 3FJUB 2ECJA 1JM7B 1E4UA 2YQMA 3MDBC 2I50A 3EB6A 3ZTGA 4AYCB 4S3OC 4A0CD 2QIZA 3DQVR 3ZNIA 4OGCA 3LVQE 2KYUA 5FB0A 3O7AA 4Q6FA 5D1KB 3U5NA 3C5KA 2VJEB 2CRWA 2YUCA 1MBMA 1MM3A 2KWKA 5SVYA 4PPEA 2YSMA 5DINA 3H7HA 5EYAF 4UP0A 3ZVYA 2FUUA 5JG6A 3O36A 4F52B 4YC9A 4A4BA 5TRBA 1WEOA 4V3KC 2DJAA 4N4FA 3O37A 4QQ4A 2F6NA 1CHCA 3T9KA 2E6RA 3N9MA 4O62A 1HYJA 1V87A 2E61A 3GV4A 4PTBA 3O35A 3Q1DA 3KQIA 2MUMA 2YURA 2LN0A 3M7KA 2VPEA 3JUEA 2L5UA 5KH3A 3SOWA 1WEMA 3N9QA 4FO9A 4R7EA 4I7CA 5DKAA 3HTKC 4QF3A 4FK5A 5G0FA 1U6GB 1Z60A 2PUYA 3PUQA 1X4JA 2KREA 4GNDA 1Z6UA 2CSZA 5C13A 5B76A 4I7DA 2YT5A 2JUNA 2F6JA 5KH9A 1K2FA 4OGEA 3E2DA 2YU4A 4YBMA 2KGIA 2KGGA 5B8DA 3O34A 5SVXA 2G45A 4Z0RA 3N9LA 5TBNA 2K4DA 4B7YC 5B75A 3SUBA 3FAOA 5TDRA 2KU3A 2M85A 3MHSA 4YBSA 2FSAA 4S3OB 4W4UA 1LDJB 2L80A 3EB5A 2G43A 3I2DA 3FEHA 5H1TA 2IQJA 2MNZA 1WEEA 3VK6A 2XOCA 3LQJA 4R8PK 1Z2QA 2LGGA 3LVRE 3DDTA 4ZQLA 1FP0A 2Y1NA 2ZETC 1WENA 5LKZA 2RI7A 1DVPA 1WIMA 2CONA 4AP4A 4X3GA 3O47A 2ECGA 3RPGC 4FJCA 2CSVA 3IHPA 4L58A 4QF2A 1IYMA 1G25A 2L75A 2PNXA 4IC2A 2KE1A 3HCUA 1WEPA 2XEUA 4ZDTA 2KWOA 2RR4A 4I7BA 5K3QA 3PLWA 4NN2A 5SVIB 4LADB 2YSJA 2CSYA 2JMIA 2L7PA 1N87A 2HDPA 4YBTA 2ECNA 2MD8C 2XB1A 4WZ0A 2RSDA 2C2LA 3O33A 2NAAA 4GNFA 4A4CA 4IC3A 5AIUA 4LLBA 2OWAA 1WILA 2M3HA 5LCWB 5TABA 3KNVA 2LQ6A 5G05B 2MKEA 2L0BA 3ZPV1 3RTRB
chains in the Genus database with same CATH topology
2L7PA 3T9KA 3DWDA 2JUNA 2FD4A 4OGCA 2CONA 4OGEA 3E2DA 4O62A 3LVQE 2YREA 2B0OE 2KKYA 5SVIA 3O47A 2LAUA 2XOYA 3FEHA 3KDEC 2IQJA 2KKXA 4Z0OA 3H7HA 2XOZA 2EXUA 2CSVA 3LDYA 2CRRA 2E61A 2XOCA 2YVRA 5SVXA 2OWAA 3JUEA 4Z0RA 3FJUB 3Q1DA 1DCQA 4F1PA 2EGMA 3SUBA 2XP0A 2CRWA 4H9DA 3LVRE 2RR4A 3DDTA 3MDBC 5K3QA 3PLWA 2D8UA 5SVIB 2FFWA 3LJUX 3M7KA 2MKEA 2M13A 3FM8C 2DJAA 2JM3A 4QQ4A 2P57A 5SVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PLW A; 
#chains in the Genus database with same CATH topology
 3M62 A;  3HCT A;  3T6R A;  2MNY A;  4UI9 B;  2KWJ A;  3ZYQ A;  4XI1 A;  2LAU A;  2G6Q A;  3KDE C;  3FL2 A;  2XOZ A;  2EXU A;  2OXQ C;  5FB1 A;  2VP7 A;  3U5O A;  2Y1M A;  1RMD A;  2EGM A;  4TKP B;  4CCG X;  3LQH A;  3N9O A;  2LDR A;  3ZVZ B;  3MHH A;  4WZ3 B;  2M13 A;  4AVX A;  5B77 A;  2MT5 A;  1FBV A;  4YAD A;  4BBQ A;  5B78 A;  5H1V A;  3O70 A;  2K16 A;  3V43 A;  3M99 A;  5C11 A;  2QIC A;  4Z0O A;  2HYE D;  2VPG A;  2LXP C;  2K17 A;  2YQL A;  4A49 A;  3ASL A;  5B79 A;  2ECV A;  2YW8 A;  1VYX A;  2BAY A;  2KR4 A;  5LKU A;  1F62 A;  1WGM A;  3LQI A;  3LJU X;  1VD4 A;  3N9N A;  3KV5 A;  3KV6 A;  2P57 A;  2F42 A;  2MD7 B;  4R2Y A;  1MM2 A;  4C9Z A;  4ZUX U;  2B0O E;  2KKY A;  2M1R A;  5SVI A;  2CKL A;  3L1X A;  4LJN A;  2KKX A;  5I3L A;  1X4I A;  1LDK C;  3U5M A;  5H9M A;  2H0D A;  2FUI A;  1JOC A;  3PHD A;  4WZ2 A;  1WEW A;  1BOR A;  2LXH C;  1WFK A;  3FM8 C;  4GNG A;  2L43 A;  3N9P A;  4MVT A;  4LKA A;  1VFY A;  4GB0 A;  3T7L A;  3GL6 A;  2M6M A;  3RPG B;  3L1Z B;  4V3L C;  2YVR A;  2DX8 A;  3LRQ A;  2CT2 A;  3U5P A;  1WEV A;  2D8U A;  2FFW A;  4YAB A;  1WE9 A;  2CKL B;  2JMD A;  1ZBD B;  2Y43 A;  2JM3 A;  2AN6 A;  5D1M B;  5G04 B;  2E6S A;  2VPD A;  5TDW A;  1WEU A;  2VNF A;  1WES A;  4P5O B;  2D8S A;  3SHB A;  2H0D B;  2LV9 A;  2YRE A;  4WA6 A;  2LRI C;  3LDY A;  3ZPV E;  2EOD A;  4YAT A;  4UP5 A;  2XP0 A;  1WEQ A;  5LKT A;  5D1L B;  5AIT A;  3C6W A;  2ECW A;  2LGK A;  3SOX A;  1HYI A;  2KIZ A;  2VJF A;  4YAX A;  4CA1 A;  3NG2 A;  1XWH A;  2XOY A;  3M63 A;  4MSX A;  3DPL R;  2KFT A;  2VPB A;  2MA6 A;  4L7X A;  4LK9 A;  5H1U A;  5KH7 A;  2CRR A;  5J3X A;  2EGP A;  2LGL A;  1DCQ A;  4F1P A;  4N3W A;  4AUQ B;  2QJ0 A;  4H9D A;  3FAN A;  2YYR A;  2K1J A;  2ECT A;  2IDA A;  2ECI A;  2EA6 A;  3DWD A;  1JM7 A;  3L11 A;  2JRJ A;  2LGV A;  3QZV A;  3SOU A;  4AYC A;  1T1H A;  2DSM A;  4O64 A;  2YHN A;  3PUR A;  2VJF B;  4FIP A;  2YHO A;  5FEY A;  1X4U A;  4GNE A;  2MA5 A;  2KWN A;  5FER A;  4B86 C;  2VJE A;  3HCS A;  2FD4 A;  2MIQ A;  4BHW A;  5LKX A;  2JMJ A;  2C2V S;  2UZG A;  3FJU B;  2ECJ A;  1JM7 B;  1E4U A;  2YQM A;  3MDB C;  2I50 A;  3EB6 A;  3ZTG A;  4AYC B;  4S3O C;  4A0C D;  2QIZ A;  3DQV R;  3ZNI A;  4OGC A;  3LVQ E;  2KYU A;  5FB0 A;  3O7A A;  4Q6F A;  5D1K B;  3U5N A;  3C5K A;  2VJE B;  2CRW A;  2YUC A;  1MBM A;  1MM3 A;  2KWK A;  5SVY A;  4PPE A;  2YSM A;  5DIN A;  3H7H A;  5EYA F;  4UP0 A;  3ZVY A;  2FUU A;  5JG6 A;  3O36 A;  4F52 B;  4YC9 A;  4A4B A;  5TRB A;  1WEO A;  4V3K C;  2DJA A;  4N4F A;  3O37 A;  4QQ4 A;  2F6N A;  1CHC A;  3T9K A;  2E6R A;  3N9M A;  4O62 A;  1HYJ A;  1V87 A;  2E61 A;  3GV4 A;  4PTB A;  3O35 A;  3Q1D A;  3KQI A;  2MUM A;  2YUR A;  2LN0 A;  3M7K A;  2VPE A;  3JUE A;  2L5U A;  5KH3 A;  3SOW A;  1WEM A;  3N9Q A;  4FO9 A;  4R7E A;  4I7C A;  5DKA A;  3HTK C;  4QF3 A;  4FK5 A;  5G0F A;  1U6G B;  1Z60 A;  2PUY A;  3PUQ A;  1X4J A;  2KRE A;  4GND A;  1Z6U A;  2CSZ A;  5C13 A;  5B76 A;  4I7D A;  2YT5 A;  2JUN A;  2F6J A;  5KH9 A;  1K2F A;  4OGE A;  3E2D A;  2YU4 A;  4YBM A;  2KGI A;  2KGG A;  5B8D A;  3O34 A;  5SVX A;  2G45 A;  4Z0R A;  3N9L A;  5TBN A;  2K4D A;  4B7Y C;  5B75 A;  3SUB A;  3FAO A;  5TDR A;  2KU3 A;  2M85 A;  3MHS A;  4YBS A;  2FSA A;  4S3O B;  4W4U A;  1LDJ B;  2L80 A;  3EB5 A;  2G43 A;  3I2D A;  3FEH A;  5H1T A;  2IQJ A;  2MNZ A;  1WEE A;  3VK6 A;  2XOC A;  3LQJ A;  4R8P K;  1Z2Q A;  2LGG A;  3LVR E;  3DDT A;  4ZQL A;  1FP0 A;  2Y1N A;  2ZET C;  1WEN A;  5LKZ A;  2RI7 A;  1DVP A;  1WIM A;  2CON A;  4AP4 A;  4X3G A;  3O47 A;  2ECG A;  3RPG C;  4FJC A;  2CSV A;  3IHP A;  4L58 A;  4QF2 A;  1IYM A;  1G25 A;  2L75 A;  2PNX A;  4IC2 A;  2KE1 A;  3HCU A;  1WEP A;  2XEU A;  4ZDT A;  2KWO A;  2RR4 A;  4I7B A;  5K3Q A;  3PLW A;  4NN2 A;  5SVI B;  4LAD B;  2YSJ A;  2CSY A;  2JMI A;  2L7P A;  1N87 A;  2HDP A;  4YBT A;  2ECN A;  2MD8 C;  2XB1 A;  4WZ0 A;  2RSD A;  2C2L A;  3O33 A;  2NAA A;  4GNF A;  4A4C A;  4IC3 A;  5AIU A;  4LLB A;  2OWA A;  1WIL A;  2M3H A;  5LCW B;  5TAB A;  3KNV A;  2LQ6 A;  5G05 B;  2MKE A;  2L0B A;  3ZPV 1;  3RTR B; 
#chains in the Genus database with same CATH homology
 2L7P A;  3T9K A;  3DWD A;  2JUN A;  2FD4 A;  4OGC A;  2CON A;  4OGE A;  3E2D A;  4O62 A;  3LVQ E;  2YRE A;  2B0O E;  2KKY A;  5SVI A;  3O47 A;  2LAU A;  2XOY A;  3FEH A;  3KDE C;  2IQJ A;  2KKX A;  4Z0O A;  3H7H A;  2XOZ A;  2EXU A;  2CSV A;  3LDY A;  2CRR A;  2E61 A;  2XOC A;  2YVR A;  5SVX A;  2OWA A;  3JUE A;  4Z0R A;  3FJU B;  3Q1D A;  1DCQ A;  4F1P A;  2EGM A;  3SUB A;  2XP0 A;  2CRW A;  4H9D A;  3LVR E;  2RR4 A;  3DDT A;  3MDB C;  5K3Q A;  3PLW A;  2D8U A;  5SVI B;  2FFW A;  3LJU X;  3M7K A;  2MKE A;  2M13 A;  3FM8 C;  2DJA A;  2JM3 A;  4QQ4 A;  2P57 A;  5SVY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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