The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
110
|
structure length |
110
|
Chain Sequence |
b'GRTPTAEERRIANALGALPCIACYMHGVISNEVSLHHIAGRTAPGCHKKQLPLCRWHHQHAAPAEVREKYPWLVPVHADGVVGGKKEFTLLNKSEMELLADAYEMANIMH'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Creating Directed Double-strand Breaks with the Ref Protein: A NOVEL RecA-DEPENDENT NUCLEASE FROM BACTERIOPHAGE P1.
pubmed doi rcsb |
| molecule keywords |
Recombination enhancement function protein
|
| source organism |
Enterobacteria phage p1
|
| molecule tags |
Hydrolase
|
| total genus |
30
|
| structure length |
110
|
| sequence length |
110
|
| ec nomenclature | |
| pdb deposition date | 2010-11-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16786 | RecA_dep_nuc | Recombination enhancement, RecA-dependent nuclease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Herpes Virus-1 |
#chains in the Genus database with same CATH superfamily 3PLW A; #chains in the Genus database with same CATH topology 2M3H A; 2KGI A; 4GNF A; 3O36 A; 5G05 B; 4L7X A; 2LRI C; 4N4F A; 5TRB A; 5AIU A; 2QIC A; 2CON A; 3ZVZ B; 2JUN A; 2JMI A; 2M85 A; 2L80 A; 4QF3 A; 2HYE D; 2F6N A; 2FD4 A; 2KR4 A; 2LAU A; 2CRW A; 5H1V A; 4NN2 A; 1Z60 A; 4LLB A; 3L1Z B; 4QQ4 A; 2CSV A; 2Y43 A; 3EB5 A; 4A49 A; 4C9Z A; 1E4U A; 4GNE A; 2L7P A; 2LDR A; 4OGC A; 2RSD A; 3FAN A; 1VYX A; 3ZPV 1; 4R7E A; 3IHP A; 4F1P A; 2Y1N A; 4AYC A; 1IYM A; 2MIQ A; 4YC9 A; 1F62 A; 2I50 A; 1WIL A; 3SUB A; 2P57 A; 3FJU B; 4V3L C; 4X3G A; 3LQH A; 2EOD A; 3N9N A; 1HYI A; 2K16 A; 2XOZ A; 2FFW A; 1WEV A; 1V87 A; 2LQ6 A; 4LK9 A; 2H0D A; 2ECG A; 4ZUX U; 3M62 A; 3C6W A; 3ZYQ A; 3GL6 A; 3DPL R; 2JMJ A; 2G45 A; 2JRJ A; 3L11 A; 4WZ3 B; 2KYU A; 4PPE A; 3EB6 A; 4AVX A; 1K2F A; 2F6J A; 2E61 A; 2F42 A; 3PLW A; 3LRQ A; 2IDA A; 3O70 A; 4I7C A; 2KKX A; 1RMD A; 2LN0 A; 3LQI A; 3U5M A; 4AUQ B; 1WFK A; 5H1U A; 2VP7 A; 3QZV A; 2MT5 A; 2YVR A; 5DIN A; 2YYR A; 3O7A A; 3LJU X; 2EA6 A; 2DJA A; 2CKL B; 2YUC A; 4ZDT A; 4FIP A; 5H9M A; 3HCT A; 1WGM A; 4A4C A; 4I7D A; 3SOU A; 3DDT A; 2EGM A; 4B86 C; 1N87 A; 2LGG A; 4GB0 A; 4XI1 A; 4UP5 A; 1MBM A; 2M1R A; 4MSX A; 1WEO A; 4S3O C; 2VPG A; 2KKY A; 2ECN A; 5D1M B; 4ZQL A; 3N9M A; 2D8S A; 2YQM A; 5B77 A; 2KE1 A; 1JM7 A; 2VJE A; 3T6R A; 2ZET C; 1Z6U A; 2FUU A; 4H9D A; 5K3Q A; 1ZBD B; 5G0F A; 2VJF A; 4IC3 A; 3GV4 A; 5TDR A; 5D1L B; 4GND A; 3KQI A; 3RPG C; 5KH7 A; 4N3W A; 1WEQ A; 1VFY A; 3FL2 A; 4LJN A; 4CCG X; 3HCS A; 3T9K A; 1WEN A; 2ECI A; 4BHW A; 3ZNI A; 3PUQ A; 2MNZ A; 2DSM A; 2CSY A; 2OXQ C; 5LKU A; 2E6S A; 2L5U A; 5H1T A; 1X4I A; 5LKX A; 2KGG A; 3KNV A; 4W4U A; 3VK6 A; 5FER A; 2YW8 A; 4O62 A; 2KRE A; 3H7H A; 2MKE A; 2K1J A; 3KV6 A; 2XB1 A; 5B78 A; 3SOX A; 5JG6 A; 3SHB A; 1LDJ B; 4FK5 A; 1DVP A; 3N9O A; 4S3O B; 3HTK C; 3PHD A; 2YSM A; 2YU4 A; 2BAY A; 2YHN A; 4BBQ A; 2K17 A; 5SVI A; 1JOC A; 2Y1M A; 2E6R A; 3DQV R; 3FM8 C; 2LGV A; 3DWD A; 4Z0R A; 3O34 A; 3PUR A; 5KH3 A; 1CHC A; 4WZ0 A; 5LCW B; 5SVX A; 2D8U A; 1XWH A; 3E2D A; 2DX8 A; 5TAB A; 3N9L A; 2YUR A; 4YAT A; 3MDB C; 5B79 A; 1WEP A; 3FAO A; 4YAB A; 2VNF A; 2YT5 A; 2LXH C; 2FUI A; 1WIM A; 3HCU A; 2LV9 A; 2KWJ A; 2G43 A; 4WA6 A; 5FB0 A; 3RTR B; 3V43 A; 2UZG A; 5AIT A; 4I7B A; 3Q1D A; 1VD4 A; 1DCQ A; 4IC2 A; 4YBS A; 2MD7 B; 2VPB A; 2LGL A; 4AYC B; 4MVT A; 2PUY A; 3FEH A; 2QIZ A; 3M7K A; 3MHH A; 5C11 A; 1FBV A; 2LGK A; 5SVY A; 2MD8 C; 4FJC A; 4OGE A; 2CT2 A; 4O64 A; 5EYA F; 3KV5 A; 4CA1 A; 2M13 A; 2PNX A; 3NG2 A; 2ECW A; 2H0D B; 2IQJ A; 1T1H A; 2FSA A; 2ECJ A; 2KIZ A; 2G6Q A; 5KH9 A; 4Q6F A; 4YAD A; 3U5P A; 3SOW A; 3ASL A; 2C2V S; 1X4J A; 3O35 A; 3N9P A; 3ZTG A; 3N9Q A; 5C13 A; 3LVR E; 2XOC A; 1Z2Q A; 3KDE C; 5TDW A; 2CKL A; 3MHS A; 5DKA A; 5LKZ A; 5I3L A; 3JUE A; 2ECT A; 4B7Y C; 3M99 A; 1U6G B; 3M63 A; 1WEW A; 2YQL A; 4V3K C; 3ZPV E; 2XOY A; 4QF2 A; 3U5O A; 4AP4 A; 2RR4 A; 2M6M A; 2HDP A; 2CSZ A; 2B0O E; 2KWK A; 3C5K A; 4LKA A; 3LDY A; 4P5O B; 1X4U A; 5G04 B; 2VPD A; 3ZVY A; 1WES A; 2XEU A; 2MNY A; 4YBM A; 2EGP A; 2C2L A; 2KWN A; 4UP0 A; 4R8P K; 4F52 B; 2MUM A; 3O33 A; 3RPG B; 2XP0 A; 1LDK C; 1JM7 B; 2CRR A; 2VJE B; 5B8D A; 2ECV A; 2VJF B; 3LQJ A; 5J3X A; 3O37 A; 5LKT A; 4YBT A; 3T7L A; 4R2Y A; 3O47 A; 1HYJ A; 2NAA A; 4L58 A; 2LXP C; 2OWA A; 2EXU A; 5B75 A; 2L43 A; 2RI7 A; 1FP0 A; 4UI9 B; 4FO9 A; 2JM3 A; 3LVQ E; 2JMD A; 2YSJ A; 1WEM A; 2QJ0 A; 5TBN A; 2MA6 A; 3L1X A; 2KFT A; 5FEY A; 5FB1 A; 2AN6 A; 2KWO A; 2YRE A; 2MA5 A; 2YHO A; 4LAD B; 1WEU A; 1WEE A; 1BOR A; 4TKP B; 3U5N A; 2L75 A; 4PTB A; 2L0B A; 5B76 A; 4A4B A; 1MM3 A; 2VPE A; 4YAX A; 4WZ2 A; 4A0C D; 4Z0O A; 2K4D A; 2KU3 A; 4GNG A; 1G25 A; 1WE9 A; 5D1K B; 5SVI B; 1MM2 A; 3I2D A; #chains in the Genus database with same CATH homology 2EXU A; 4QQ4 A; 3T9K A; 5SVY A; 2FFW A; 2XP0 A; 4OGE A; 2CSV A; 2KKX A; 2D8U A; 4H9D A; 5K3Q A; 5SVX A; 2L7P A; 2XOY A; 3E2D A; 4OGC A; 2JM3 A; 3DDT A; 3LVQ E; 3LVR E; 2EGM A; 2XOC A; 2RR4 A; 2CRR A; 2M13 A; 2CON A; 3Q1D A; 3M7K A; 2JUN A; 4F1P A; 3KDE C; 2IQJ A; 2YVR A; 3MDB C; 1DCQ A; 2B0O E; 4Z0O A; 5SVI A; 3LDY A; 2FD4 A; 2YRE A; 3SUB A; 3LJU X; 3FM8 C; 2LAU A; 2CRW A; 2KKY A; 2DJA A; 3DWD A; 2P57 A; 3FEH A; 3FJU B; 3JUE A; 2E61 A; 3O47 A; 4O62 A; 4Z0R A; 5SVI B; 3PLW A; 3H7H A; 2MKE A; 2OWA A; 2XOZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
