2FD4A

Crystal structure of avrptob (436-553)
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
120
structure length
105
Chain Sequence
b'KLAALDPIASQFSQLRTISKALGFKDAADDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQPYSDLAFMDMKKLAQFLAGKPEHPMTRETLNAENIAKYAFRIVP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A bacterial inhibitor of host programmed cell death defenses is an E3 ubiquitin ligase.
pubmed doi rcsb
molecule keywords avirulence protein AvrptoB
source organism Pseudomonas syringae
molecule tags Ligase
total genus 23
structure length 105
sequence length 120
ec nomenclature
pdb deposition date 2005-12-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.110 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2fd4A00
2FD4A
chains in the Genus database with same CATH superfamily
4L58A 3DWDA 2ECJA 4L7XA 4UP5A 2JMDA 3U5NA 2D8SA 1WENA 4YBMA 3EB6A 4YBSA 4F1PA 1WEQA 2MA6A 3N9LA 1HYIA 5KH9A 2KWOA 2Y1MA 2JRJA 3E2DA 4W4UA 4A0CD 2MNZA 2ECTA 5SVYA 2VP7A 2K1JA 3LDYA 3EB5A 4IC2A 4A4BA 2QIZA 3O7AA 1WEVA 2KGIA 3FAOA 3IHPA 4ZQLA 3M99A 4YABA 4FIPA 2F6JA 4WA6A 2EA6A 4IC3A 5D1LB 1VFYA 2YHOA 2EODA 2MIQA 2G43A 3C5KA 4A4CA 2PUYA 3LJUX 5LKTA 5LCWB 1RMDA 4X3GA 1WESA 3C6WA 5H1UA 4I7BA 1CHCA 5H1TA 2LGLA 2M6MA 2MNYA 4V3KC 1WE9A 1T1HA 3N9PA 1VD4A 2CT2A 5J3XA 5KH7A 3L1XA 3U5MA 4R2YA 4TKPB 5B76A 3ZVYA 4O64A 2F42A 1FBVA 2CRWA 4R7EA 2G45A 2LQ6A 2YQLA 2E6RA 3T6RA 2MA5A 2DX8A 4LKAA 2M13A 2LDRA 3SHBA 5B77A 4GNGA 4V3LC 3SOWA 2MUMA 2JMJA 2KIZA 4MSXA 2L80A 3O70A 4S3OC 3O33A 4QF3A 4AYCA 2VJEB 4YADA 2LGKA 3ZVZB 2VPDA 3O47A 2LV9A 2KKYA 5TDRA 2VPEA 5D1MB 2LN0A 5LKUA 3Q1DA 3JUEA 4NN2A 4LK9A 2HDPA 2Y1NA 1ZBDB 2NAAA 2RI7A 4CCGX 2ZETC 2CKLA 2MD7B 1DVPA 2L75A 2HYED 4YATA 2VJFB 4AUQB 1Z60A 2RSDA 2KKXA 5JG6A 5AIUA 3N9OA 2YURA 2ECNA 2KWKA 4OGEA 5SVIB 3PUQA 1VYXA 2XEUA 4AVXA 2F6NA 1WEEA 2M85A 2K17A 5H1VA 3M62A 1E4UA 5KH3A 5D1KB 4C9ZA 5TABA 1WGMA 2YREA 4GNDA 2UZGA 2AN6A 3ZPV1 3U5OA 4FO9A 4Q6FA 2ECWA 1Z6UA 2EGPA 4YBTA 2IDAA 4GNFA 3VK6A 2LGVA 1JM7B 2E61A 2B0OE 1WEOA 2JUNA 2C2VS 3PLWA 4N4FA 5AITA 1WEPA 2YVRA 4BBQA 2E6SA 2G6QA 2FFWA 5EYAF 4P5OB 2CONA 3M7KA 5B8DA 2JM3A 2H0DB 3LQHA 2M1RA 3ZNIA 2CSYA 2ECIA 3MHSA 3FJUB 5G0FA 3SUBA 4B7YC 3RPGB 2P57A 5FEYA 2ECGA 2XOZA 1WEMA 3L11A 3GV4A 1JOCA 2VPGA 2YSJA 1X4UA 3O35A 2CSVA 2YHNA 4I7DA 2FUUA 4PPEA 5LKXA 4GNEA 4LLBA 2K16A 4WZ3B 2RR4A 2MT5A 5TBNA 1WFKA 4GB0A 2ECVA 2XOCA 5FB0A 5LKZA 1G25A 2M3HA 5B75A 3ZPVE 1WEWA 5G05B 3LQJA 5DKAA 4AP4A 3FM8C 4UP0A 2KWJA 1MM2A 4O62A 1MM3A 4XI1A 3KDEC 1HYJA 3ZYQA 2C2LA 2LXHC 1WIMA 1V87A 2DSMA 2LAUA 3DDTA 2LXPC 2OWAA 4QF2A 1Z2QA 2KU3A 3FANA 3FEHA 1N87A 5FERA 5SVXA 2KGGA 4A49A 3U5PA 3L1ZB 3HTKC 2D8UA 4N3WA 4UI9B 1IYMA 3MDBC 4FJCA 5TRBA 2YW8A 3PHDA 3ZTGA 3H7HA 3MHHA 4PTBA 1F62A 4F52B 2JMIA 2VJEA 5K3QA 2CSZA 5I3LA 3DPLR 1WEUA 3I2DA 2L5UA 2YYRA 2L7PA 4WZ2A 5B79A 3RTRB 1BORA 1WILA 3KV6A 3LVRE 5G04B 3DQVR 3T7LA 2FSAA 2FD4A 3SOUA 3FL2A 2VNFA 2XP0A 4S3OB 2YSMA 4YAXA 4MVTA 4AYCB 4BHWA 2CRRA 2I50A 3GL6A 3T9KA 3N9MA 1XWHA 2KYUA 2VJFA 4I7CA 5C13A 1DCQA 4WZ0A 2QICA 3O36A 4LADB 2IQJA 2MKEA 2YUCA 1X4IA 5SVIA 3HCUA 2VPBA 5FB1A 4R8PK 4H9DA 1LDKC 2CKLB 3HCSA 3V43A 4OGCA 2EXUA 2KREA 2YU4A 5B78A 4ZUXU 3N9NA 4YC9A 2QJ0A 1FP0A 3KV5A 2KE1A 5DINA 2EGMA 5TDWA 3KNVA 3O34A 5C11A 4QQ4A 1U6GB 2KR4A 1MBMA 1JM7A 2OXQC 2BAYA 2DJAA 1K2FA 4LJNA 4B86C 3PURA 2K4DA 2PNXA 2L0BA 4Z0OA 2YQMA 2Y43A 2H0DA 2YT5A 2MD8C 2KFTA 3O37A 2LRIC 4FK5A 3KQIA 3QZVA 5H9MA 3LRQA 2KWNA 2L43A 4Z0RA 2XB1A 1X4JA 3HCTA 3N9QA 2FUIA 3RPGC 2XOYA 4CA1A 4ZDTA 3LVQE 3M63A 3ASLA 1LDJB 3LQIA 2LGGA 3SOXA 3NG2A
chains in the Genus database with same CATH topology
2B0OE 2IQJA 2MKEA 3LVRE 2JUNA 4QQ4A 5SVXA 3FM8C 3PLWA 3DWDA 2P57A 2RR4A 2YVRA 5SVYA 5SVIA 3SUBA 3O47A 2D8UA 2KKYA 3LDYA 2XOZA 3MDBC 2KKXA 2CRWA 3LJUX 4H9DA 2FFWA 2FD4A 3H7HA 3Q1DA 2CONA 2XP0A 2YREA 2DJAA 3JUEA 4O62A 2XOCA 3M7KA 3KDEC 2CSVA 4Z0RA 4OGEA 2JM3A 4OGCA 2EXUA 5K3QA 2CRRA 2M13A 2LAUA 4F1PA 5SVIB 3T9KA 3DDTA 2L7PA 2XOYA 3LVQE 4Z0OA 2OWAA 3E2DA 1DCQA 3FJUB 3FEHA 2EGMA 2E61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FD4 A; 
#chains in the Genus database with same CATH topology
 4L58 A;  3DWD A;  2ECJ A;  4L7X A;  4UP5 A;  2JMD A;  3U5N A;  2D8S A;  1WEN A;  4YBM A;  3EB6 A;  4YBS A;  4F1P A;  1WEQ A;  2MA6 A;  3N9L A;  1HYI A;  5KH9 A;  2KWO A;  2Y1M A;  2JRJ A;  3E2D A;  4W4U A;  4A0C D;  2MNZ A;  2ECT A;  5SVY A;  2VP7 A;  2K1J A;  3LDY A;  3EB5 A;  4IC2 A;  4A4B A;  2QIZ A;  3O7A A;  1WEV A;  2KGI A;  3FAO A;  3IHP A;  4ZQL A;  3M99 A;  4YAB A;  4FIP A;  2F6J A;  4WA6 A;  2EA6 A;  4IC3 A;  5D1L B;  1VFY A;  2YHO A;  2EOD A;  2MIQ A;  2G43 A;  3C5K A;  4A4C A;  2PUY A;  3LJU X;  5LKT A;  5LCW B;  1RMD A;  4X3G A;  1WES A;  3C6W A;  5H1U A;  4I7B A;  1CHC A;  5H1T A;  2LGL A;  2M6M A;  2MNY A;  4V3K C;  1WE9 A;  1T1H A;  3N9P A;  1VD4 A;  2CT2 A;  5J3X A;  5KH7 A;  3L1X A;  3U5M A;  4R2Y A;  4TKP B;  5B76 A;  3ZVY A;  4O64 A;  2F42 A;  1FBV A;  2CRW A;  4R7E A;  2G45 A;  2LQ6 A;  2YQL A;  2E6R A;  3T6R A;  2MA5 A;  2DX8 A;  4LKA A;  2M13 A;  2LDR A;  3SHB A;  5B77 A;  4GNG A;  4V3L C;  3SOW A;  2MUM A;  2JMJ A;  2KIZ A;  4MSX A;  2L80 A;  3O70 A;  4S3O C;  3O33 A;  4QF3 A;  4AYC A;  2VJE B;  4YAD A;  2LGK A;  3ZVZ B;  2VPD A;  3O47 A;  2LV9 A;  2KKY A;  5TDR A;  2VPE A;  5D1M B;  2LN0 A;  5LKU A;  3Q1D A;  3JUE A;  4NN2 A;  4LK9 A;  2HDP A;  2Y1N A;  1ZBD B;  2NAA A;  2RI7 A;  4CCG X;  2ZET C;  2CKL A;  2MD7 B;  1DVP A;  2L75 A;  2HYE D;  4YAT A;  2VJF B;  4AUQ B;  1Z60 A;  2RSD A;  2KKX A;  5JG6 A;  5AIU A;  3N9O A;  2YUR A;  2ECN A;  2KWK A;  4OGE A;  5SVI B;  3PUQ A;  1VYX A;  2XEU A;  4AVX A;  2F6N A;  1WEE A;  2M85 A;  2K17 A;  5H1V A;  3M62 A;  1E4U A;  5KH3 A;  5D1K B;  4C9Z A;  5TAB A;  1WGM A;  2YRE A;  4GND A;  2UZG A;  2AN6 A;  3ZPV 1;  3U5O A;  4FO9 A;  4Q6F A;  2ECW A;  1Z6U A;  2EGP A;  4YBT A;  2IDA A;  4GNF A;  3VK6 A;  2LGV A;  1JM7 B;  2E61 A;  2B0O E;  1WEO A;  2JUN A;  2C2V S;  3PLW A;  4N4F A;  5AIT A;  1WEP A;  2YVR A;  4BBQ A;  2E6S A;  2G6Q A;  2FFW A;  5EYA F;  4P5O B;  2CON A;  3M7K A;  5B8D A;  2JM3 A;  2H0D B;  3LQH A;  2M1R A;  3ZNI A;  2CSY A;  2ECI A;  3MHS A;  3FJU B;  5G0F A;  3SUB A;  4B7Y C;  3RPG B;  2P57 A;  5FEY A;  2ECG A;  2XOZ A;  1WEM A;  3L11 A;  3GV4 A;  1JOC A;  2VPG A;  2YSJ A;  1X4U A;  3O35 A;  2CSV A;  2YHN A;  4I7D A;  2FUU A;  4PPE A;  5LKX A;  4GNE A;  4LLB A;  2K16 A;  4WZ3 B;  2RR4 A;  2MT5 A;  5TBN A;  1WFK A;  4GB0 A;  2ECV A;  2XOC A;  5FB0 A;  5LKZ A;  1G25 A;  2M3H A;  5B75 A;  3ZPV E;  1WEW A;  5G05 B;  3LQJ A;  5DKA A;  4AP4 A;  3FM8 C;  4UP0 A;  2KWJ A;  1MM2 A;  4O62 A;  1MM3 A;  4XI1 A;  3KDE C;  1HYJ A;  3ZYQ A;  2C2L A;  2LXH C;  1WIM A;  1V87 A;  2DSM A;  2LAU A;  3DDT A;  2LXP C;  2OWA A;  4QF2 A;  1Z2Q A;  2KU3 A;  3FAN A;  3FEH A;  1N87 A;  5FER A;  5SVX A;  2KGG A;  4A49 A;  3U5P A;  3L1Z B;  3HTK C;  2D8U A;  4N3W A;  4UI9 B;  1IYM A;  3MDB C;  4FJC A;  5TRB A;  2YW8 A;  3PHD A;  3ZTG A;  3H7H A;  3MHH A;  4PTB A;  1F62 A;  4F52 B;  2JMI A;  2VJE A;  5K3Q A;  2CSZ A;  5I3L A;  3DPL R;  1WEU A;  3I2D A;  2L5U A;  2YYR A;  2L7P A;  4WZ2 A;  5B79 A;  3RTR B;  1BOR A;  1WIL A;  3KV6 A;  3LVR E;  5G04 B;  3DQV R;  3T7L A;  2FSA A;  2FD4 A;  3SOU A;  3FL2 A;  2VNF A;  2XP0 A;  4S3O B;  2YSM A;  4YAX A;  4MVT A;  4AYC B;  4BHW A;  2CRR A;  2I50 A;  3GL6 A;  3T9K A;  3N9M A;  1XWH A;  2KYU A;  2VJF A;  4I7C A;  5C13 A;  1DCQ A;  4WZ0 A;  2QIC A;  3O36 A;  4LAD B;  2IQJ A;  2MKE A;  2YUC A;  1X4I A;  5SVI A;  3HCU A;  2VPB A;  5FB1 A;  4R8P K;  4H9D A;  1LDK C;  2CKL B;  3HCS A;  3V43 A;  4OGC A;  2EXU A;  2KRE A;  2YU4 A;  5B78 A;  4ZUX U;  3N9N A;  4YC9 A;  2QJ0 A;  1FP0 A;  3KV5 A;  2KE1 A;  5DIN A;  2EGM A;  5TDW A;  3KNV A;  3O34 A;  5C11 A;  4QQ4 A;  1U6G B;  2KR4 A;  1MBM A;  1JM7 A;  2OXQ C;  2BAY A;  2DJA A;  1K2F A;  4LJN A;  4B86 C;  3PUR A;  2K4D A;  2PNX A;  2L0B A;  4Z0O A;  2YQM A;  2Y43 A;  2H0D A;  2YT5 A;  2MD8 C;  2KFT A;  3O37 A;  2LRI C;  4FK5 A;  3KQI A;  3QZV A;  5H9M A;  3LRQ A;  2KWN A;  2L43 A;  4Z0R A;  2XB1 A;  1X4J A;  3HCT A;  3N9Q A;  2FUI A;  3RPG C;  2XOY A;  4CA1 A;  4ZDT A;  3LVQ E;  3M63 A;  3ASL A;  1LDJ B;  3LQI A;  2LGG A;  3SOX A;  3NG2 A; 
#chains in the Genus database with same CATH homology
 2B0O E;  2IQJ A;  2MKE A;  3LVR E;  2JUN A;  4QQ4 A;  5SVX A;  3FM8 C;  3PLW A;  3DWD A;  2P57 A;  2RR4 A;  2YVR A;  5SVY A;  5SVI A;  3SUB A;  3O47 A;  2D8U A;  2KKY A;  3LDY A;  2XOZ A;  3MDB C;  2KKX A;  2CRW A;  3LJU X;  4H9D A;  2FFW A;  2FD4 A;  3H7H A;  3Q1D A;  2CON A;  2XP0 A;  2YRE A;  2DJA A;  3JUE A;  4O62 A;  2XOC A;  3M7K A;  3KDE C;  2CSV A;  4Z0R A;  4OGE A;  2JM3 A;  4OGC A;  2EXU A;  5K3Q A;  2CRR A;  2M13 A;  2LAU A;  4F1P A;  5SVI B;  3T9K A;  3DDT A;  2L7P A;  2XOY A;  3LVQ E;  4Z0O A;  2OWA A;  3E2D A;  1DCQ A;  3FJU B;  3FEH A;  2EGM A;  2E61 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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