2FD4A

Crystal structure of avrptob (436-553)
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
120
structure length
105
Chain Sequence
KLAALDPIASQFSQLRTISKALGFKDAADDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQPYSDLAFMDMKKLAQFLAGKPEHPMTRETLNAENIAKYAFRIVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Pseudomonas syringae
publication title A bacterial inhibitor of host programmed cell death defenses is an E3 ubiquitin ligase.
pubmed doi rcsb
molecule keywords avirulence protein AvrptoB
total genus 23
structure length 105
sequence length 120
ec nomenclature
pdb deposition date 2005-12-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.110 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2fd4A00
2FD4A
chains in the Genus database with same CATH superfamily
3O35A 3SOXA 2DJAA 3HCSA 2PNXA 3ZVZB 3FL2A 4Q6FA 2M1RA 2JM3A 3LVRE 2Y1NA 4I7CA 2MT5A 2CKLB 3ZPV1 2JUNA 4O62A 3U5MA 2YYRA 2MNYA 3ZYQA 2F6NA 2OXQC 4A0CD 2E6SA 3ASLA 5B75A 4PTBA 3ZTGA 1LDJB 5AIUA 2FUIA 1VFYA 1MM2A 5DINA 2DX8A 3M99A 2HDPA 3IHPA 3SOWA 2CSYA 4V3KC 4A4BA 3E2DA 2LGLA 2MA5A 4CA1A 4AVXA 3L1ZB 2F6JA 2MA6A 2LV9A 5LCWB 4UP0A 3LQIA 4R2YA 1U6GB 2VP7A 3GV4A 2L43A 4LADB 1WFKA 2K16A 3EB6A 2M85A 3I2DA 4LLBA 1WEMA 2ECWA 4L58A 5J3XA 1V87A 3LQHA 1DVPA 2DSMA 3O37A 2B0OE 5DKAA 4O64A 4MSXA 2EA6A 2E6RA 1ZBDB 3M7KA 1IYMA 5KH9A 5TDWA 4NN2A 4FK5A 5K3QA 4R7EA 1FP0A 3O33A 2RR4A 2I50A 3N9MA 4A4CA 5SVYA 2KYUA 2YSMA 5SVIA 3QZVA 4F1PA 5FB1A 3LQJA 5AITA 3DWDA 2KWOA 3T7LA 2ECVA 2H0DB 2JMDA 1BORA 4W4UA 2KE1A 3EB5A 4UP5A 3O7AA 2G6QA 3T6RA 2LGKA 4YC9A 2YHNA 2LGGA 5D1LB 4WZ3B 5SVXA 4GNFA 5LKTA 2RSDA 4OGEA 3KV6A 2C2VS 3MDBC 2CONA 2YREA 2HYED 2RI7A 3C6WA 5LKZA 2VJEB 4AYCA 2AN6A 2KR4A 3N9QA 2NAAA 2LAUA 2CKLA 3GL6A 2XOYA 1JM7A 2MD8C 1WEPA 1WEUA 3C5KA 3FM8C 5B76A 4OGCA 5D1KB 2EXUA 1WENA 5H1TA 1WESA 2YHOA 1DCQA 4ZQLA 4Z0RA 2UZGA 3O70A 2C2LA 1FBVA 4I7DA 4V3LC 2YW8A 2G45A 1HYJA 1Z2QA 2MKEA 4GNGA 3PLWA 1MBMA 4FO9A 3DPLR 2L80A 3PURA 3FANA 5EYAF 5C13A 2XOCA 4GB0A 4R8PK 2G43A 2VPBA 4C9ZA 1WEQA 5B79A 1JOCA 1LDKC 3T9KA 2FD4A 3V43A 1N87A 2ZETC 3MHHA 4F52B 2XP0A 4L7XA 2M3HA 4UI9B 3HTKC 2EODA 3N9PA 3U5PA 2H0DA 3SOUA 2JMIA 2XEUA 1WEVA 2EGMA 2L75A 3L1XA 2YT5A 1RMDA 2LXPC 2KGIA 2M13A 1X4IA 1WEEA 2ECNA 3Q1DA 4YABA 2KIZA 3ZPVE 4QF3A 3HCTA 4TKPB 5JG6A 3VK6A 4B86C 4N3WA 4QF2A 2LDRA 2F42A 3PHDA 4AP4A 1WILA 4XI1A 4QQ4A 3HCUA 2VJEA 4YATA 5TRBA 3KNVA 2KREA 2ECIA 3M62A 5H9MA 4B7YC 2YSJA 2MNZA 4YADA 2CSVA 2VNFA 2YQMA 5KH7A 2KGGA 3FJUB 5KH3A 4ZUXU 4MVTA 3RPGC 5B8DA 1WIMA 2L7PA 5SVIB 2VPGA 3ZVYA 2VJFB 2BAYA 2YU4A 4FJCA 1HYIA 2MIQA 5TBNA 4BHWA 2KFTA 5G04B 1VYXA 2YURA 2LN0A 1K2FA 2ECJA 3NG2A 1WEOA 2Y1MA 2MD7B 5LKUA 3N9LA 2CRRA 2EGPA 3JUEA 3M63A 2PUYA 3RPGB 2KWKA 2QJ0A 2FUUA 5C11A 3SHBA 3LVQE 2Y43A 4LK9A 3ZNIA 4AYCB 4ZDTA 4CCGX 3LRQA 2KKXA 2VPEA 3O34A 4Z0OA 2LGVA 1X4UA 5I3LA 1JM7B 4BBQA 5TABA 2ECTA 2QIZA 2K1JA 3N9OA 3KDEC 1VD4A 3RTRB 3H7HA 3MHSA 3KQIA 4WZ0A 5G0FA 1T1HA 2KKYA 4FIPA 1WGMA 3N9NA 2VPDA 5H1UA 1WE9A 3FAOA 3FEHA 4S3OC 1CHCA 2ECGA 3DDTA 5TDRA 1F62A 2KU3A 2XB1A 5FB0A 2QICA 2XOZA 3PUQA 3LJUX 4P5OB 2JMJA 2M6MA 1G25A 3O47A 4LJNA 4YBTA 4LKAA 2YQLA 5B78A 1X4JA 4GNDA 2KWNA 3L11A 2YUCA 2YVRA 2FFWA 2P57A 4S3OB 2D8UA 2LXHC 2OWAA 5LKXA 2LQ6A 2IQJA 2IDAA 4N4FA 4WZ2A 2K4DA 2LRIC 4IC2A 4IC3A 1Z6UA 4WA6A 3SUBA 2E61A 2VJFA 2K17A 4GNEA 4PPEA 4X3GA 3U5OA 3LDYA 5D1MB 2CT2A 2MUMA 4H9DA 5B77A 4YAXA 4AUQB 5FERA 2CRWA 1Z60A 3KV5A 4I7BA 5G05B 2KWJA 2L0BA 5H1VA 3O36A 2L5UA 2CSZA 1XWHA 1WEWA 1MM3A 3DQVR 4YBMA 3U5NA 5FEYA 1E4UA 4YBSA 2JRJA 4A49A 2FSAA 2D8SA
chains in the Genus database with same CATH topology
2RR4A 2DJAA 3H7HA 2EGMA 2XOYA 2XOZA 4OGEA 3LVQE 3LJUX 5SVYA 3MDBC 2CONA 2JM3A 2M13A 3LVRE 3O47A 3Q1DA 5SVIA 4F1PA 2KKYA 2KKXA 2MKEA 2YREA 3FM8C 3T9KA 4OGCA 2FD4A 3DWDA 3PLWA 2E61A 3SUBA 4Z0OA 2CSVA 2EXUA 2XP0A 3E2DA 3FEHA 2JUNA 2YVRA 3DDTA 2B0OE 3LDYA 3FJUB 4O62A 2FFWA 2P57A 2CRRA 4H9DA 2D8UA 3M7KA 3JUEA 5K3QA 2L7PA 5SVIB 2OWAA 1DCQA 2XOCA 4QQ4A 5SVXA 2LAUA 3KDEC 4Z0RA 2IQJA 2CRWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FD4 A; 
#chains in the Genus database with same CATH topology
 3O35 A;  3SOX A;  2DJA A;  3HCS A;  2PNX A;  3ZVZ B;  3FL2 A;  4Q6F A;  2M1R A;  2JM3 A;  3LVR E;  2Y1N A;  4I7C A;  2MT5 A;  2CKL B;  3ZPV 1;  2JUN A;  4O62 A;  3U5M A;  2YYR A;  2MNY A;  3ZYQ A;  2F6N A;  2OXQ C;  4A0C D;  2E6S A;  3ASL A;  5B75 A;  4PTB A;  3ZTG A;  1LDJ B;  5AIU A;  2FUI A;  1VFY A;  1MM2 A;  5DIN A;  2DX8 A;  3M99 A;  2HDP A;  3IHP A;  3SOW A;  2CSY A;  4V3K C;  4A4B A;  3E2D A;  2LGL A;  2MA5 A;  4CA1 A;  4AVX A;  3L1Z B;  2F6J A;  2MA6 A;  2LV9 A;  5LCW B;  4UP0 A;  3LQI A;  4R2Y A;  1U6G B;  2VP7 A;  3GV4 A;  2L43 A;  4LAD B;  1WFK A;  2K16 A;  3EB6 A;  2M85 A;  3I2D A;  4LLB A;  1WEM A;  2ECW A;  4L58 A;  5J3X A;  1V87 A;  3LQH A;  1DVP A;  2DSM A;  3O37 A;  2B0O E;  5DKA A;  4O64 A;  4MSX A;  2EA6 A;  2E6R A;  1ZBD B;  3M7K A;  1IYM A;  5KH9 A;  5TDW A;  4NN2 A;  4FK5 A;  5K3Q A;  4R7E A;  1FP0 A;  3O33 A;  2RR4 A;  2I50 A;  3N9M A;  4A4C A;  5SVY A;  2KYU A;  2YSM A;  5SVI A;  3QZV A;  4F1P A;  5FB1 A;  3LQJ A;  5AIT A;  3DWD A;  2KWO A;  3T7L A;  2ECV A;  2H0D B;  2JMD A;  1BOR A;  4W4U A;  2KE1 A;  3EB5 A;  4UP5 A;  3O7A A;  2G6Q A;  3T6R A;  2LGK A;  4YC9 A;  2YHN A;  2LGG A;  5D1L B;  4WZ3 B;  5SVX A;  4GNF A;  5LKT A;  2RSD A;  4OGE A;  3KV6 A;  2C2V S;  3MDB C;  2CON A;  2YRE A;  2HYE D;  2RI7 A;  3C6W A;  5LKZ A;  2VJE B;  4AYC A;  2AN6 A;  2KR4 A;  3N9Q A;  2NAA A;  2LAU A;  2CKL A;  3GL6 A;  2XOY A;  1JM7 A;  2MD8 C;  1WEP A;  1WEU A;  3C5K A;  3FM8 C;  5B76 A;  4OGC A;  5D1K B;  2EXU A;  1WEN A;  5H1T A;  1WES A;  2YHO A;  1DCQ A;  4ZQL A;  4Z0R A;  2UZG A;  3O70 A;  2C2L A;  1FBV A;  4I7D A;  4V3L C;  2YW8 A;  2G45 A;  1HYJ A;  1Z2Q A;  2MKE A;  4GNG A;  3PLW A;  1MBM A;  4FO9 A;  3DPL R;  2L80 A;  3PUR A;  3FAN A;  5EYA F;  5C13 A;  2XOC A;  4GB0 A;  4R8P K;  2G43 A;  2VPB A;  4C9Z A;  1WEQ A;  5B79 A;  1JOC A;  1LDK C;  3T9K A;  2FD4 A;  3V43 A;  1N87 A;  2ZET C;  3MHH A;  4F52 B;  2XP0 A;  4L7X A;  2M3H A;  4UI9 B;  3HTK C;  2EOD A;  3N9P A;  3U5P A;  2H0D A;  3SOU A;  2JMI A;  2XEU A;  1WEV A;  2EGM A;  2L75 A;  3L1X A;  2YT5 A;  1RMD A;  2LXP C;  2KGI A;  2M13 A;  1X4I A;  1WEE A;  2ECN A;  3Q1D A;  4YAB A;  2KIZ A;  3ZPV E;  4QF3 A;  3HCT A;  4TKP B;  5JG6 A;  3VK6 A;  4B86 C;  4N3W A;  4QF2 A;  2LDR A;  2F42 A;  3PHD A;  4AP4 A;  1WIL A;  4XI1 A;  4QQ4 A;  3HCU A;  2VJE A;  4YAT A;  5TRB A;  3KNV A;  2KRE A;  2ECI A;  3M62 A;  5H9M A;  4B7Y C;  2YSJ A;  2MNZ A;  4YAD A;  2CSV A;  2VNF A;  2YQM A;  5KH7 A;  2KGG A;  3FJU B;  5KH3 A;  4ZUX U;  4MVT A;  3RPG C;  5B8D A;  1WIM A;  2L7P A;  5SVI B;  2VPG A;  3ZVY A;  2VJF B;  2BAY A;  2YU4 A;  4FJC A;  1HYI A;  2MIQ A;  5TBN A;  4BHW A;  2KFT A;  5G04 B;  1VYX A;  2YUR A;  2LN0 A;  1K2F A;  2ECJ A;  3NG2 A;  1WEO A;  2Y1M A;  2MD7 B;  5LKU A;  3N9L A;  2CRR A;  2EGP A;  3JUE A;  3M63 A;  2PUY A;  3RPG B;  2KWK A;  2QJ0 A;  2FUU A;  5C11 A;  3SHB A;  3LVQ E;  2Y43 A;  4LK9 A;  3ZNI A;  4AYC B;  4ZDT A;  4CCG X;  3LRQ A;  2KKX A;  2VPE A;  3O34 A;  4Z0O A;  2LGV A;  1X4U A;  5I3L A;  1JM7 B;  4BBQ A;  5TAB A;  2ECT A;  2QIZ A;  2K1J A;  3N9O A;  3KDE C;  1VD4 A;  3RTR B;  3H7H A;  3MHS A;  3KQI A;  4WZ0 A;  5G0F A;  1T1H A;  2KKY A;  4FIP A;  1WGM A;  3N9N A;  2VPD A;  5H1U A;  1WE9 A;  3FAO A;  3FEH A;  4S3O C;  1CHC A;  2ECG A;  3DDT A;  5TDR A;  1F62 A;  2KU3 A;  2XB1 A;  5FB0 A;  2QIC A;  2XOZ A;  3PUQ A;  3LJU X;  4P5O B;  2JMJ A;  2M6M A;  1G25 A;  3O47 A;  4LJN A;  4YBT A;  4LKA A;  2YQL A;  5B78 A;  1X4J A;  4GND A;  2KWN A;  3L11 A;  2YUC A;  2YVR A;  2FFW A;  2P57 A;  4S3O B;  2D8U A;  2LXH C;  2OWA A;  5LKX A;  2LQ6 A;  2IQJ A;  2IDA A;  4N4F A;  4WZ2 A;  2K4D A;  2LRI C;  4IC2 A;  4IC3 A;  1Z6U A;  4WA6 A;  3SUB A;  2E61 A;  2VJF A;  2K17 A;  4GNE A;  4PPE A;  4X3G A;  3U5O A;  3LDY A;  5D1M B;  2CT2 A;  2MUM A;  4H9D A;  5B77 A;  4YAX A;  4AUQ B;  5FER A;  2CRW A;  1Z60 A;  3KV5 A;  4I7B A;  5G05 B;  2KWJ A;  2L0B A;  5H1V A;  3O36 A;  2L5U A;  2CSZ A;  1XWH A;  1WEW A;  1MM3 A;  3DQV R;  4YBM A;  3U5N A;  5FEY A;  1E4U A;  4YBS A;  2JRJ A;  4A49 A;  2FSA A;  2D8S A; 
#chains in the Genus database with same CATH homology
 2RR4 A;  2DJA A;  3H7H A;  2EGM A;  2XOY A;  2XOZ A;  4OGE A;  3LVQ E;  3LJU X;  5SVY A;  3MDB C;  2CON A;  2JM3 A;  2M13 A;  3LVR E;  3O47 A;  3Q1D A;  5SVI A;  4F1P A;  2KKY A;  2KKX A;  2MKE A;  2YRE A;  3FM8 C;  3T9K A;  4OGC A;  2FD4 A;  3DWD A;  3PLW A;  2E61 A;  3SUB A;  4Z0O A;  2CSV A;  2EXU A;  2XP0 A;  3E2D A;  3FEH A;  2JUN A;  2YVR A;  3DDT A;  2B0O E;  3LDY A;  3FJU B;  4O62 A;  2FFW A;  2P57 A;  2CRR A;  4H9D A;  2D8U A;  3M7K A;  3JUE A;  5K3Q A;  2L7P A;  5SVI B;  2OWA A;  1DCQ A;  2XOC A;  4QQ4 A;  5SVX A;  2LAU A;  3KDE C;  4Z0R A;  2IQJ A;  2CRW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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