2IQJA

Crystal structure of the gap domain of smap1l (loc64744) stromal membrane-associated protein 1-like
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
118
structure length
118
Chain Sequence
RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Homo sapiens
publication title Structure of the GAP domain of SMAP1L (LOC64744) stromal membrane-associated protein 1-like
rcsb
molecule keywords Stromal membrane-associated protein 1-like
total genus 39
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2iqjA00
2B0OE 3LJUX 2IQJA 3LVRE 2CRWA 3JUEA 3O47A 3LVQE 3MDBC 2CRRA 3FEHA 3SUBA 3T9KA 2OWAA 2P57A 3DWDA 1DCQA 3FM8C 4F1PA
chains in the Genus database with same CATH superfamily
3L11A 2VJFA 2EGMA 2XOYA 4O64A 2M1RA 4W4UA 3RPGB 2M13A 3U5MA 5TABA 4B7YC 4V3LC 2JM3A 4GNFA 5LKZA 4XI1A 1BORA 4MSXA 4Q6FA 3VK6A 5KH9A 3L1XA 2OWAA 4LK9A 3O34A 2QJ0A 4OGCA 2IDAA 2MA5A 2VP7A 3ZNIA 4N4FA 5D1MB 3KQIA 4P5OB 1T1HA 3LVQE 2XP0A 2G6QA 3FEHA 2I50A 2C2LA 3M99A 4NN2A 4CCGX 2KU3A 3O37A 2BAYA 3LQHA 3EB5A 4V3KC 3MHSA 1WIMA 2HDPA 4PPEA 5H1UA 2LQ6A 4ZUXU 4QQ4A 1WEPA 4WZ2A 2Y1NA 4WA6A 2EXUA 2LN0A 4ZDTA 4A0CD 2RSDA 2IQJA 1MM2A 1ZBDB 2KKYA 4I7CA 5C11A 2CRRA 2KIZA 3PURA 3KV5A 2CT2A 2FUUA 2KWJA 2VPDA 2CKLB 5KH3A 3SOUA 2E61A 1WEQA 1E4UA 3T6RA 3DPLR 2MT5A 4AVXA 1LDJB 3ZVZB 4AYCB 2HYED 2KWNA 3RPGC 2LRIC 1FP0A 4Z0OA 2L75A 3FANA 2LXPC 1RMDA 2LV9A 4R2YA 4R7EA 2LGGA 4YATA 3SUBA 3FL2A 3LQIA 5LKXA 4L58A 4I7BA 2M6MA 5AITA 2FD4A 2MKEA 5SVIB 1VFYA 2RI7A 4LLBA 2JMJA 5H9MA 3ZPVE 5B77A 2XOCA 5TRBA 2YUCA 2K16A 2G43A 3NG2A 1WEWA 2VPGA 1X4IA 3SOXA 5FB1A 4C9ZA 3Q1DA 2YYRA 3H7HA 3EB6A 3FAOA 4H9DA 4FO9A 2DJAA 2L7PA 3KNVA 4FK5A 5KH7A 2CRWA 1Z60A 2FSAA 1JOCA 3U5OA 4L7XA 3V43A 5B76A 5EYAF 2LXHC 3PUQA 2MD8C 3DWDA 2YT5A 2YVRA 1JM7B 5G0FA 2YURA 2RR4A 1WEEA 4YBTA 1WE9A 4QF2A 2LDRA 2KR4A 5LKUA 2G45A 1WESA 2VPEA 2VJFB 3O36A 2FFWA 3GV4A 2ECJA 5LKTA 5H1VA 2M85A 3C5KA 2EODA 5G04B 2H0DA 5DINA 4GNDA 1Z6UA 1HYIA 1WENA 2UZGA 3I2DA 2ECNA 1HYJA 4AP4A 3JUEA 2ECGA 2LGKA 5D1LB 3U5PA 4IC2A 4YAXA 4AYCA 1WEVA 4YBMA 3O33A 2YU4A 3U5NA 3KDEC 2CONA 5B79A 3M7KA 2VJEA 2PNXA 2MNYA 4YADA 5I3LA 2D8UA 1VD4A 3LQJA 2MNZA 3N9PA 2K4DA 2PUYA 2MUMA 2KFTA 3ZPV1 3O35A 5C13A 3HCUA 2K1JA 3ASLA 4BBQA 3SOWA 5FERA 4A49A 3DDTA 3M63A 3FJUB 4AUQB 4QF3A 1LDKC 3M62A 1V87A 2QIZA 4Z0RA 3HCTA 5H1TA 3HTKC 2NAAA 4OGEA 2YHNA 2KYUA 4F1PA 3N9MA 5FB0A 2C2VS 2KREA 4GNEA 1MBMA 4X3GA 3MDBC 1WGMA 2K17A 2KWKA 1X4JA 3PHDA 5TDRA 3LRQA 1Z2QA 4ZQLA 4PTBA 1WEOA 2MA6A 2KWOA 2P57A 2XOZA 3E2DA 3KV6A 2YQMA 5D1KB 1MM3A 5AIUA 5J3XA 3FM8C 4CA1A 2LGVA 4WZ3B 5SVXA 2B0OE 4LKAA 2AN6A 2YSMA 2YSJA 2E6RA 3O47A 2ZETC 5G05B 2MIQA 1VYXA 2E6SA 3N9OA 5DKAA 4S3OB 2D8SA 3L1ZB 2M3HA 3O70A 3ZVYA 4FIPA 3T7LA 4BHWA 4UI9B 4A4BA 3LDYA 2LGLA 1F62A 2JUNA 2CKLA 4FJCA 5TDWA 2JMDA 2ECIA 4F52B 1U6GB 2YHOA 1K2FA 2EA6A 4B86C 2ECVA 1FBVA 5B78A 4GB0A 3HCSA 4IC3A 3ZYQA 2ECWA 4LJNA 4YBSA 2CSZA 2XB1A 2CSYA 2KKXA 1WFKA 4UP0A 3ZTGA 2H0DB 3PLWA 2LAUA 5SVIA 4R8PK 1N87A 4TKPB 2KE1A 2KGGA 4YC9A 2KGIA 2VNFA 2FUIA 2Y43A 1WEMA 1DCQA 2L5UA 2JMIA 3N9NA 1IYMA 2YREA 4WZ0A 5LCWB 3LVRE 2MD7B 4I7DA 4N3WA 1DVPA 1WILA 2XEUA 3DQVR 2OXQC 2YW8A 2F42A 3N9QA 4S3OC 3GL6A 2F6JA 2JRJA 2VJEB 5B8DA 1WEUA 4O62A 3T9KA 3RTRB 2F6NA 2L0BA 2VPBA 4A4CA 1G25A 4UP5A 3MHHA 2QICA 4LADB 2L43A 2L80A 5TBNA 1CHCA 3QZVA 5JG6A 4MVTA 1XWHA 3LJUX 3N9LA 1X4UA 2DX8A 3C6WA 4YABA 3IHPA 2Y1MA 3SHBA 1JM7A 2DSMA 2EGPA 2CSVA 2ECTA 5SVYA 3O7AA 5K3QA 4GNGA 2YQLA 5FEYA 5B75A
chains in the Genus database with same CATH topology
2EGMA 2RR4A 2XOYA 2B0OE 4H9DA 2DJAA 2EXUA 5SVXA 3LDYA 2YREA 2XOCA 3M7KA 2KKXA 2JUNA 3DDTA 2L7PA 4Z0OA 3FJUB 2M13A 2D8UA 3LJUX 2IQJA 3LVRE 2CRWA 3PLWA 2JM3A 2KKYA 3JUEA 3LVQE 2CRRA 2LAUA 2XP0A 3FEHA 3MDBC 3O47A 5SVIA 4Z0RA 2FFWA 2CSVA 3SUBA 4OGEA 5SVYA 5K3QA 4O62A 3Q1DA 3T9KA 2E61A 2FD4A 2OWAA 2P57A 2XOZA 3DWDA 2YVRA 3E2DA 2MKEA 1DCQA 4OGCA 4QQ4A 5SVIB 3KDEC 3H7HA 3FM8C 4F1PA 2CONA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B0O E;  3LJU X;  2IQJ A;  3LVR E;  2CRW A;  3JUE A;  3O47 A;  3LVQ E;  3MDB C;  2CRR A;  3FEH A;  3SUB A;  3T9K A;  2OWA A;  2P57 A;  3DWD A;  1DCQ A;  3FM8 C;  4F1P A; 
#chains in the Genus database with same CATH topology
 3L11 A;  2VJF A;  2EGM A;  2XOY A;  4O64 A;  2M1R A;  4W4U A;  3RPG B;  2M13 A;  3U5M A;  5TAB A;  4B7Y C;  4V3L C;  2JM3 A;  4GNF A;  5LKZ A;  4XI1 A;  1BOR A;  4MSX A;  4Q6F A;  3VK6 A;  5KH9 A;  3L1X A;  2OWA A;  4LK9 A;  3O34 A;  2QJ0 A;  4OGC A;  2IDA A;  2MA5 A;  2VP7 A;  3ZNI A;  4N4F A;  5D1M B;  3KQI A;  4P5O B;  1T1H A;  3LVQ E;  2XP0 A;  2G6Q A;  3FEH A;  2I50 A;  2C2L A;  3M99 A;  4NN2 A;  4CCG X;  2KU3 A;  3O37 A;  2BAY A;  3LQH A;  3EB5 A;  4V3K C;  3MHS A;  1WIM A;  2HDP A;  4PPE A;  5H1U A;  2LQ6 A;  4ZUX U;  4QQ4 A;  1WEP A;  4WZ2 A;  2Y1N A;  4WA6 A;  2EXU A;  2LN0 A;  4ZDT A;  4A0C D;  2RSD A;  2IQJ A;  1MM2 A;  1ZBD B;  2KKY A;  4I7C A;  5C11 A;  2CRR A;  2KIZ A;  3PUR A;  3KV5 A;  2CT2 A;  2FUU A;  2KWJ A;  2VPD A;  2CKL B;  5KH3 A;  3SOU A;  2E61 A;  1WEQ A;  1E4U A;  3T6R A;  3DPL R;  2MT5 A;  4AVX A;  1LDJ B;  3ZVZ B;  4AYC B;  2HYE D;  2KWN A;  3RPG C;  2LRI C;  1FP0 A;  4Z0O A;  2L75 A;  3FAN A;  2LXP C;  1RMD A;  2LV9 A;  4R2Y A;  4R7E A;  2LGG A;  4YAT A;  3SUB A;  3FL2 A;  3LQI A;  5LKX A;  4L58 A;  4I7B A;  2M6M A;  5AIT A;  2FD4 A;  2MKE A;  5SVI B;  1VFY A;  2RI7 A;  4LLB A;  2JMJ A;  5H9M A;  3ZPV E;  5B77 A;  2XOC A;  5TRB A;  2YUC A;  2K16 A;  2G43 A;  3NG2 A;  1WEW A;  2VPG A;  1X4I A;  3SOX A;  5FB1 A;  4C9Z A;  3Q1D A;  2YYR A;  3H7H A;  3EB6 A;  3FAO A;  4H9D A;  4FO9 A;  2DJA A;  2L7P A;  3KNV A;  4FK5 A;  5KH7 A;  2CRW A;  1Z60 A;  2FSA A;  1JOC A;  3U5O A;  4L7X A;  3V43 A;  5B76 A;  5EYA F;  2LXH C;  3PUQ A;  2MD8 C;  3DWD A;  2YT5 A;  2YVR A;  1JM7 B;  5G0F A;  2YUR A;  2RR4 A;  1WEE A;  4YBT A;  1WE9 A;  4QF2 A;  2LDR A;  2KR4 A;  5LKU A;  2G45 A;  1WES A;  2VPE A;  2VJF B;  3O36 A;  2FFW A;  3GV4 A;  2ECJ A;  5LKT A;  5H1V A;  2M85 A;  3C5K A;  2EOD A;  5G04 B;  2H0D A;  5DIN A;  4GND A;  1Z6U A;  1HYI A;  1WEN A;  2UZG A;  3I2D A;  2ECN A;  1HYJ A;  4AP4 A;  3JUE A;  2ECG A;  2LGK A;  5D1L B;  3U5P A;  4IC2 A;  4YAX A;  4AYC A;  1WEV A;  4YBM A;  3O33 A;  2YU4 A;  3U5N A;  3KDE C;  2CON A;  5B79 A;  3M7K A;  2VJE A;  2PNX A;  2MNY A;  4YAD A;  5I3L A;  2D8U A;  1VD4 A;  3LQJ A;  2MNZ A;  3N9P A;  2K4D A;  2PUY A;  2MUM A;  2KFT A;  3ZPV 1;  3O35 A;  5C13 A;  3HCU A;  2K1J A;  3ASL A;  4BBQ A;  3SOW A;  5FER A;  4A49 A;  3DDT A;  3M63 A;  3FJU B;  4AUQ B;  4QF3 A;  1LDK C;  3M62 A;  1V87 A;  2QIZ A;  4Z0R A;  3HCT A;  5H1T A;  3HTK C;  2NAA A;  4OGE A;  2YHN A;  2KYU A;  4F1P A;  3N9M A;  5FB0 A;  2C2V S;  2KRE A;  4GNE A;  1MBM A;  4X3G A;  3MDB C;  1WGM A;  2K17 A;  2KWK A;  1X4J A;  3PHD A;  5TDR A;  3LRQ A;  1Z2Q A;  4ZQL A;  4PTB A;  1WEO A;  2MA6 A;  2KWO A;  2P57 A;  2XOZ A;  3E2D A;  3KV6 A;  2YQM A;  5D1K B;  1MM3 A;  5AIU A;  5J3X A;  3FM8 C;  4CA1 A;  2LGV A;  4WZ3 B;  5SVX A;  2B0O E;  4LKA A;  2AN6 A;  2YSM A;  2YSJ A;  2E6R A;  3O47 A;  2ZET C;  5G05 B;  2MIQ A;  1VYX A;  2E6S A;  3N9O A;  5DKA A;  4S3O B;  2D8S A;  3L1Z B;  2M3H A;  3O70 A;  3ZVY A;  4FIP A;  3T7L A;  4BHW A;  4UI9 B;  4A4B A;  3LDY A;  2LGL A;  1F62 A;  2JUN A;  2CKL A;  4FJC A;  5TDW A;  2JMD A;  2ECI A;  4F52 B;  1U6G B;  2YHO A;  1K2F A;  2EA6 A;  4B86 C;  2ECV A;  1FBV A;  5B78 A;  4GB0 A;  3HCS A;  4IC3 A;  3ZYQ A;  2ECW A;  4LJN A;  4YBS A;  2CSZ A;  2XB1 A;  2CSY A;  2KKX A;  1WFK A;  4UP0 A;  3ZTG A;  2H0D B;  3PLW A;  2LAU A;  5SVI A;  4R8P K;  1N87 A;  4TKP B;  2KE1 A;  2KGG A;  4YC9 A;  2KGI A;  2VNF A;  2FUI A;  2Y43 A;  1WEM A;  1DCQ A;  2L5U A;  2JMI A;  3N9N A;  1IYM A;  2YRE A;  4WZ0 A;  5LCW B;  3LVR E;  2MD7 B;  4I7D A;  4N3W A;  1DVP A;  1WIL A;  2XEU A;  3DQV R;  2OXQ C;  2YW8 A;  2F42 A;  3N9Q A;  4S3O C;  3GL6 A;  2F6J A;  2JRJ A;  2VJE B;  5B8D A;  1WEU A;  4O62 A;  3T9K A;  3RTR B;  2F6N A;  2L0B A;  2VPB A;  4A4C A;  1G25 A;  4UP5 A;  3MHH A;  2QIC A;  4LAD B;  2L43 A;  2L80 A;  5TBN A;  1CHC A;  3QZV A;  5JG6 A;  4MVT A;  1XWH A;  3LJU X;  3N9L A;  1X4U A;  2DX8 A;  3C6W A;  4YAB A;  3IHP A;  2Y1M A;  3SHB A;  1JM7 A;  2DSM A;  2EGP A;  2CSV A;  2ECT A;  5SVY A;  3O7A A;  5K3Q A;  4GNG A;  2YQL A;  5FEY A;  5B75 A; 
#chains in the Genus database with same CATH homology
 2EGM A;  2RR4 A;  2XOY A;  2B0O E;  4H9D A;  2DJA A;  2EXU A;  5SVX A;  3LDY A;  2YRE A;  2XOC A;  3M7K A;  2KKX A;  2JUN A;  3DDT A;  2L7P A;  4Z0O A;  3FJU B;  2M13 A;  2D8U A;  3LJU X;  2IQJ A;  3LVR E;  2CRW A;  3PLW A;  2JM3 A;  2KKY A;  3JUE A;  3LVQ E;  2CRR A;  2LAU A;  2XP0 A;  3FEH A;  3MDB C;  3O47 A;  5SVI A;  4Z0R A;  2FFW A;  2CSV A;  3SUB A;  4OGE A;  5SVY A;  5K3Q A;  4O62 A;  3Q1D A;  3T9K A;  2E61 A;  2FD4 A;  2OWA A;  2P57 A;  2XOZ A;  3DWD A;  2YVR A;  3E2D A;  2MKE A;  1DCQ A;  4OGC A;  4QQ4 A;  5SVI B;  3KDE C;  3H7H A;  3FM8 C;  4F1P A;  2CON A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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