2IQJA

Crystal structure of the gap domain of smap1l (loc64744) stromal membrane-associated protein 1-like
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
118
structure length
118
Chain Sequence
RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Stromal membrane-associated protein 1-like
publication title Structure of the GAP domain of SMAP1L (LOC64744) stromal membrane-associated protein 1-like
rcsb
source organism Homo sapiens
molecule tags Protein transport
total genus 39
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2iqjA00
4F1PA 2CRWA 2IQJA 1DCQA 3MDBC 3T9KA 3O47A 3FEHA 3JUEA 3LVRE 3LVQE 2CRRA 2P57A 3DWDA 3LJUX 2B0OE 2OWAA 3SUBA 3FM8C
chains in the Genus database with same CATH superfamily
3O7AA 2G43A 2E6RA 5DINA 2L43A 5AITA 2Y1NA 1WESA 2P57A 3O34A 3LRQA 4AVXA 2KIZA 4TKPB 2LXPC 2F6NA 2FD4A 4F52B 2XB1A 2MNYA 3LQHA 2MKEA 3ZTGA 2Y1MA 3O35A 3M62A 2C2VS 3FL2A 2CRWA 1WGMA 2M1RA 4O64A 5SVXA 2EGPA 4GNGA 2JM3A 4GNFA 3M99A 2AN6A 2BAYA 2LAUA 3HCUA 2CSZA 4PTBA 5G05B 5B77A 4Z0OA 2VPEA 3L11A 1K2FA 2XOZA 3SOWA 3ASLA 2LGVA 1T1HA 2ECNA 2G6QA 1WEMA 2RSDA 2KKXA 3DQVR 3HTKC 1X4IA 1WEPA 1WEQA 1JM7B 2VJFB 3SHBA 2FUUA 1MM2A 1N87A 2YYRA 1FP0A 4LKAA 4CA1A 2KWJA 4S3OB 2XOYA 1MBMA 3QZVA 2H0DA 2YW8A 1E4UA 2JMJA 1JOCA 3PHDA 4X3GA 2C2LA 1WEWA 3ZPVE 4V3LC 1U6GB 1WIMA 3KV5A 4XI1A 2CKLA 2M6MA 3KDEC 2RR4A 5EYAF 3N9LA 2VPDA 2LV9A 5C13A 4LADB 1Z6UA 3DDTA 2L5UA 1XWHA 4FO9A 3HCSA 1DCQA 2DX8A 2VJEB 5LKXA 1F62A 1WEEA 4ZQLA 4YAXA 1WEOA 3ZPV1 4B7YC 4N4FA 2VPBA 4WA6A 4QF2A 5I3LA 2XOCA 3MDBC 2VP7A 2ECGA 3O37A 3C6WA 2G45A 3LVRE 3M63A 2UZGA 4LK9A 3LVQE 1RMDA 5G0FA 2CRRA 1CHCA 3SOUA 2JRJA 5SVYA 2LDRA 3N9OA 1ZBDB 2DJAA 3LQIA 3T6RA 3U5MA 1VYXA 2B0OE 2MT5A 3MHSA 2KKYA 2YHNA 2LQ6A 4S3OC 2L80A 2LN0A 2NAAA 4Z0RA 5G04B 3FAOA 3PLWA 2KR4A 2MA5A 4GNDA 5C11A 2LGGA 2EA6A 5H1VA 3N9PA 2K16A 5SVIA 2KFTA 1Z2QA 3Q1DA 4O62A 2JUNA 1WE9A 4YATA 2LGKA 2M13A 3ZVZB 4CCGX 2KU3A 5B8DA 3KNVA 5H1UA 4PPEA 1LDJB 4YABA 2CONA 1WEUA 4A4BA 4AYCA 5TRBA 4GB0A 5B75A 4I7DA 1LDKC 1MM3A 2MA6A 4W4UA 4A49A 3L1XA 4R2YA 4IC2A 5J3XA 5FB1A 5JG6A 1HYJA 2LXHC 4N3WA 4YC9A 3IHPA 5K3QA 1FBVA 5DKAA 2L7PA 2XEUA 3E2DA 2YURA 2MNZA 4V3KC 4YADA 3RPGB 4R7EA 1X4JA 5LKUA 2IDAA 3KQIA 5D1LB 5TBNA 2K17A 2VNFA 5FB0A 4WZ2A 5KH7A 3O70A 4A0CD 2HYED 3DWDA 2H0DB 1IYMA 3SOXA 2K4DA 2EGMA 2XP0A 5B78A 4I7BA 2DSMA 3C5KA 3MHHA 4P5OB 2PNXA 4UI9B 2KE1A 2ECWA 4UP0A 1Z60A 2CKLB 1VD4A 2ECTA 2KWOA 5D1KB 5H9MA 2MD7B 3N9NA 4MSXA 2K1JA 3RTRB 4BBQA 1VFYA 4AP4A 4B86C 2D8UA 3FJUB 2LRIC 4Q6FA 3L1ZB 1WFKA 2FSAA 3O36A 4QQ4A 5KH3A 2YQMA 3V43A 4FIPA 4OGCA 2VPGA 2HDPA 4WZ3B 2ECJA 3NG2A 4H9DA 2YU4A 1JM7A 2VJFA 2L75A 2L0BA 2QICA 3HCTA 2E61A 2FUIA 2JMIA 3M7KA 2KGGA 5LKTA 4FK5A 3SUBA 2YREA 2KYUA 2CT2A 3RPGC 2JMDA 4F1PA 3T7LA 3N9QA 5LKZA 4IC3A 3GV4A 2PUYA 5TDWA 2ECIA 1WILA 4NN2A 3FM8C 4LLBA 5FERA 2IQJA 4OGEA 2YT5A 3FEHA 4MVTA 4BHWA 2F6JA 2KWNA 3FANA 2RI7A 5SVIB 2VJEA 4YBSA 3N9MA 2YUCA 5LCWB 4GNEA 1WENA 2OXQC 2YQLA 1HYIA 3U5NA 2CSYA 5B76A 1WEVA 1DVPA 3PURA 3ZNIA 1BORA 3EB6A 3LQJA 2M3HA 4QF3A 4AUQB 5TABA 2ZETC 3T9KA 3U5OA 3U5PA 4AYCB 2LGLA 3ZYQA 3O47A 2FFWA 3JUEA 4UP5A 3H7HA 2QIZA 2MD8C 5H1TA 4ZDTA 2QJ0A 3O33A 4R8PK 4L58A 4LJNA 2E6SA 5KH9A 2KREA 3I2DA 5AIUA 2EXUA 4C9ZA 4I7CA 2YHOA 2YSJA 4YBTA 2YVRA 2KGIA 2Y43A 3PUQA 3ZVYA 2YSMA 5D1MB 5B79A 2MUMA 2D8SA 3KV6A 2F42A 3VK6A 2CSVA 1V87A 3GL6A 4FJCA 3EB5A 5TDRA 4WZ0A 1G25A 2I50A 4ZUXU 2MIQA 3LJUX 1X4UA 2EODA 2KWKA 2M85A 2OWAA 4L7XA 3DPLR 5FEYA 4A4CA 4YBMA 3LDYA 2ECVA
chains in the Genus database with same CATH topology
4F1PA 2CRWA 2IQJA 1DCQA 2XOCA 3MDBC 3T9KA 3PLWA 2CONA 4OGEA 2KKXA 5SVXA 2CSVA 3FEHA 3O47A 2FFWA 4H9DA 3JUEA 3LVRE 2RR4A 3KDEC 5SVIB 3LVQE 2CRRA 5K3QA 2JM3A 2P57A 5SVYA 5SVIA 3H7HA 2L7PA 3Q1DA 2DJAA 4O62A 2LAUA 3DWDA 2E61A 3E2DA 2JUNA 3LJUX 2B0OE 2EXUA 2XOYA 2D8UA 2FD4A 3M7KA 2KKYA 2EGMA 4Z0OA 2OWAA 2M13A 2XP0A 3FJUB 3SUBA 2MKEA 3DDTA 2YVRA 2YREA 2XOZA 4QQ4A 3FM8C 3LDYA 4OGCA 4Z0RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F1P A;  2CRW A;  2IQJ A;  1DCQ A;  3MDB C;  3T9K A;  3O47 A;  3FEH A;  3JUE A;  3LVR E;  3LVQ E;  2CRR A;  2P57 A;  3DWD A;  3LJU X;  2B0O E;  2OWA A;  3SUB A;  3FM8 C; 
#chains in the Genus database with same CATH topology
 3O7A A;  2G43 A;  2E6R A;  5DIN A;  2L43 A;  5AIT A;  2Y1N A;  1WES A;  2P57 A;  3O34 A;  3LRQ A;  4AVX A;  2KIZ A;  4TKP B;  2LXP C;  2F6N A;  2FD4 A;  4F52 B;  2XB1 A;  2MNY A;  3LQH A;  2MKE A;  3ZTG A;  2Y1M A;  3O35 A;  3M62 A;  2C2V S;  3FL2 A;  2CRW A;  1WGM A;  2M1R A;  4O64 A;  5SVX A;  2EGP A;  4GNG A;  2JM3 A;  4GNF A;  3M99 A;  2AN6 A;  2BAY A;  2LAU A;  3HCU A;  2CSZ A;  4PTB A;  5G05 B;  5B77 A;  4Z0O A;  2VPE A;  3L11 A;  1K2F A;  2XOZ A;  3SOW A;  3ASL A;  2LGV A;  1T1H A;  2ECN A;  2G6Q A;  1WEM A;  2RSD A;  2KKX A;  3DQV R;  3HTK C;  1X4I A;  1WEP A;  1WEQ A;  1JM7 B;  2VJF B;  3SHB A;  2FUU A;  1MM2 A;  1N87 A;  2YYR A;  1FP0 A;  4LKA A;  4CA1 A;  2KWJ A;  4S3O B;  2XOY A;  1MBM A;  3QZV A;  2H0D A;  2YW8 A;  1E4U A;  2JMJ A;  1JOC A;  3PHD A;  4X3G A;  2C2L A;  1WEW A;  3ZPV E;  4V3L C;  1U6G B;  1WIM A;  3KV5 A;  4XI1 A;  2CKL A;  2M6M A;  3KDE C;  2RR4 A;  5EYA F;  3N9L A;  2VPD A;  2LV9 A;  5C13 A;  4LAD B;  1Z6U A;  3DDT A;  2L5U A;  1XWH A;  4FO9 A;  3HCS A;  1DCQ A;  2DX8 A;  2VJE B;  5LKX A;  1F62 A;  1WEE A;  4ZQL A;  4YAX A;  1WEO A;  3ZPV 1;  4B7Y C;  4N4F A;  2VPB A;  4WA6 A;  4QF2 A;  5I3L A;  2XOC A;  3MDB C;  2VP7 A;  2ECG A;  3O37 A;  3C6W A;  2G45 A;  3LVR E;  3M63 A;  2UZG A;  4LK9 A;  3LVQ E;  1RMD A;  5G0F A;  2CRR A;  1CHC A;  3SOU A;  2JRJ A;  5SVY A;  2LDR A;  3N9O A;  1ZBD B;  2DJA A;  3LQI A;  3T6R A;  3U5M A;  1VYX A;  2B0O E;  2MT5 A;  3MHS A;  2KKY A;  2YHN A;  2LQ6 A;  4S3O C;  2L80 A;  2LN0 A;  2NAA A;  4Z0R A;  5G04 B;  3FAO A;  3PLW A;  2KR4 A;  2MA5 A;  4GND A;  5C11 A;  2LGG A;  2EA6 A;  5H1V A;  3N9P A;  2K16 A;  5SVI A;  2KFT A;  1Z2Q A;  3Q1D A;  4O62 A;  2JUN A;  1WE9 A;  4YAT A;  2LGK A;  2M13 A;  3ZVZ B;  4CCG X;  2KU3 A;  5B8D A;  3KNV A;  5H1U A;  4PPE A;  1LDJ B;  4YAB A;  2CON A;  1WEU A;  4A4B A;  4AYC A;  5TRB A;  4GB0 A;  5B75 A;  4I7D A;  1LDK C;  1MM3 A;  2MA6 A;  4W4U A;  4A49 A;  3L1X A;  4R2Y A;  4IC2 A;  5J3X A;  5FB1 A;  5JG6 A;  1HYJ A;  2LXH C;  4N3W A;  4YC9 A;  3IHP A;  5K3Q A;  1FBV A;  5DKA A;  2L7P A;  2XEU A;  3E2D A;  2YUR A;  2MNZ A;  4V3K C;  4YAD A;  3RPG B;  4R7E A;  1X4J A;  5LKU A;  2IDA A;  3KQI A;  5D1L B;  5TBN A;  2K17 A;  2VNF A;  5FB0 A;  4WZ2 A;  5KH7 A;  3O70 A;  4A0C D;  2HYE D;  3DWD A;  2H0D B;  1IYM A;  3SOX A;  2K4D A;  2EGM A;  2XP0 A;  5B78 A;  4I7B A;  2DSM A;  3C5K A;  3MHH A;  4P5O B;  2PNX A;  4UI9 B;  2KE1 A;  2ECW A;  4UP0 A;  1Z60 A;  2CKL B;  1VD4 A;  2ECT A;  2KWO A;  5D1K B;  5H9M A;  2MD7 B;  3N9N A;  4MSX A;  2K1J A;  3RTR B;  4BBQ A;  1VFY A;  4AP4 A;  4B86 C;  2D8U A;  3FJU B;  2LRI C;  4Q6F A;  3L1Z B;  1WFK A;  2FSA A;  3O36 A;  4QQ4 A;  5KH3 A;  2YQM A;  3V43 A;  4FIP A;  4OGC A;  2VPG A;  2HDP A;  4WZ3 B;  2ECJ A;  3NG2 A;  4H9D A;  2YU4 A;  1JM7 A;  2VJF A;  2L75 A;  2L0B A;  2QIC A;  3HCT A;  2E61 A;  2FUI A;  2JMI A;  3M7K A;  2KGG A;  5LKT A;  4FK5 A;  3SUB A;  2YRE A;  2KYU A;  2CT2 A;  3RPG C;  2JMD A;  4F1P A;  3T7L A;  3N9Q A;  5LKZ A;  4IC3 A;  3GV4 A;  2PUY A;  5TDW A;  2ECI A;  1WIL A;  4NN2 A;  3FM8 C;  4LLB A;  5FER A;  2IQJ A;  4OGE A;  2YT5 A;  3FEH A;  4MVT A;  4BHW A;  2F6J A;  2KWN A;  3FAN A;  2RI7 A;  5SVI B;  2VJE A;  4YBS A;  3N9M A;  2YUC A;  5LCW B;  4GNE A;  1WEN A;  2OXQ C;  2YQL A;  1HYI A;  3U5N A;  2CSY A;  5B76 A;  1WEV A;  1DVP A;  3PUR A;  3ZNI A;  1BOR A;  3EB6 A;  3LQJ A;  2M3H A;  4QF3 A;  4AUQ B;  5TAB A;  2ZET C;  3T9K A;  3U5O A;  3U5P A;  4AYC B;  2LGL A;  3ZYQ A;  3O47 A;  2FFW A;  3JUE A;  4UP5 A;  3H7H A;  2QIZ A;  2MD8 C;  5H1T A;  4ZDT A;  2QJ0 A;  3O33 A;  4R8P K;  4L58 A;  4LJN A;  2E6S A;  5KH9 A;  2KRE A;  3I2D A;  5AIU A;  2EXU A;  4C9Z A;  4I7C A;  2YHO A;  2YSJ A;  4YBT A;  2YVR A;  2KGI A;  2Y43 A;  3PUQ A;  3ZVY A;  2YSM A;  5D1M B;  5B79 A;  2MUM A;  2D8S A;  3KV6 A;  2F42 A;  3VK6 A;  2CSV A;  1V87 A;  3GL6 A;  4FJC A;  3EB5 A;  5TDR A;  4WZ0 A;  1G25 A;  2I50 A;  4ZUX U;  2MIQ A;  3LJU X;  1X4U A;  2EOD A;  2KWK A;  2M85 A;  2OWA A;  4L7X A;  3DPL R;  5FEY A;  4A4C A;  4YBM A;  3LDY A;  2ECV A; 
#chains in the Genus database with same CATH homology
 4F1P A;  2CRW A;  2IQJ A;  1DCQ A;  2XOC A;  3MDB C;  3T9K A;  3PLW A;  2CON A;  4OGE A;  2KKX A;  5SVX A;  2CSV A;  3FEH A;  3O47 A;  2FFW A;  4H9D A;  3JUE A;  3LVR E;  2RR4 A;  3KDE C;  5SVI B;  3LVQ E;  2CRR A;  5K3Q A;  2JM3 A;  2P57 A;  5SVY A;  5SVI A;  3H7H A;  2L7P A;  3Q1D A;  2DJA A;  4O62 A;  2LAU A;  3DWD A;  2E61 A;  3E2D A;  2JUN A;  3LJU X;  2B0O E;  2EXU A;  2XOY A;  2D8U A;  2FD4 A;  3M7K A;  2KKY A;  2EGM A;  4Z0O A;  2OWA A;  2M13 A;  2XP0 A;  3FJU B;  3SUB A;  2MKE A;  3DDT A;  2YVR A;  2YRE A;  2XOZ A;  4QQ4 A;  3FM8 C;  3LDY A;  4OGC A;  4Z0R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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