2M13A

The zz domain of cytoplasmic polyadenylation element binding protein 1 (cpeb1)
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
65
structure length
65
Chain Sequence
GPVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytoplasmic polyadenylation element-binding protein 1
publication title The C-Terminal Region of Cytoplasmic Polyadenylation Element Binding Protein Is a ZZ Domain with Potential for Protein-Protein Interactions.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Metal binding protein
total genus 10
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2012-11-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.130 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2m13A00
2MKEA 2M13A
chains in the Genus database with same CATH superfamily
3HCTA 3LJUX 1DCQA 2XOYA 4UP5A 3E2DA 2H0DA 1DVPA 4YBSA 2F6JA 1JM7A 3N9OA 4YADA 5EYAF 2RR4A 2YURA 4L58A 2LV9A 2VJEB 2L0BA 2YREA 2KR4A 2OWAA 4FK5A 1WEWA 2ECNA 2EGPA 2OXQC 3H7HA 5LKXA 2PNXA 1WEUA 5D1LB 4BHWA 2MD7B 5H9MA 1VYXA 4MVTA 4PTBA 2ECTA 4I7BA 3FANA 3ZVYA 2CONA 5FB0A 2VP7A 3PLWA 2D8UA 3O37A 3PURA 4P5OB 2Y1NA 2D8SA 2G43A 2ECIA 1T1HA 3KV5A 4LKAA 5SVIA 2MKEA 4PPEA 3N9QA 3VK6A 3PHDA 4WZ2A 4FO9A 3FAOA 1LDKC 4CA1A 1U6GB 5B77A 3KDEC 2MT5A 2XP0A 1Z60A 1MM2A 1WFKA 2MIQA 2XOZA 3T6RA 2KKYA 1Z6UA 5H1UA 2QIZA 3SUBA 3O33A 3ZNIA 2EODA 3LQIA 4IC3A 3L1XA 3EB6A 2HDPA 2LGKA 5SVYA 1WENA 1FP0A 3O7AA 3V43A 1JOCA 5AIUA 5LCWB 3T9KA 2C2VS 5KH7A 2KKXA 5B79A 2M6MA 3I2DA 2LRIC 3U5PA 3HTKC 4X3GA 4YBTA 1WEEA 4B86C 2MNZA 2C2LA 3FEHA 2LDRA 3KV6A 3ASLA 2VPDA 2KE1A 4BBQA 2L7PA 4R7EA 2DJAA 3L11A 3LVRE 3LDYA 3U5OA 5C13A 3FJUB 1WEOA 5LKUA 2CKLA 2I50A 2EXUA 2L5UA 3SOXA 2K4DA 3U5MA 4UP0A 4F1PA 4QF3A 5SVXA 2ECWA 2ECGA 5KH3A 2E61A 2VPBA 4CCGX 4A4CA 5B78A 2MNYA 4A49A 3RPGC 3N9NA 3KNVA 4NN2A 3IHPA 1WILA 5FEYA 1WGMA 2RI7A 2H0DB 3ZTGA 1WE9A 2P57A 3NG2A 1JM7B 3DQVR 2LXHC 4QF2A 3GV4A 2F42A 3DDTA 2M3HA 4N3WA 2K1JA 1VD4A 4LADB 2CSYA 2YUCA 2LN0A 4WZ0A 5DINA 5G05B 2VNFA 5TABA 2LXPC 2L43A 2AN6A 5J3XA 4C9ZA 4AYCA 2KWKA 2VJFA 2G6QA 3FL2A 3JUEA 5AITA 4V3KC 1WEVA 2FD4A 2JRJA 2FUIA 1IYMA 1FBVA 1F62A 1HYIA 3N9LA 2YQMA 4FIPA 4LJNA 1VFYA 5B8DA 1X4IA 2CRRA 4WA6A 5SVIB 2VPEA 4I7DA 3QZVA 3MDBC 3MHSA 4AP4A 1Z2QA 3C5KA 5H1VA 2ECVA 2QICA 1K2FA 5TDWA 2M1RA 2KWNA 2XB1A 2KREA 3T7LA 2DX8A 3U5NA 4GNDA 4YATA 2JMDA 5LKZA 3LRQA 2YHNA 4XI1A 2MD8C 5KH9A 1WESA 4LK9A 3LVQE 4YAXA 2KGIA 2YHOA 5B76A 4QQ4A 4A4BA 5K3QA 4Z0OA 4Z0RA 4Q6FA 2YYRA 2LGLA 3LQHA 1X4UA 2E6RA 3GL6A 1X4JA 2YQLA 3SOUA 1WEMA 2M13A 4ZQLA 5JG6A 3LQJA 2K16A 4ZUXU 2VPGA 4UI9B 2QJ0A 4OGCA 3RPGB 4I7CA 2EGMA 2IDAA 3O36A 2L80A 2ECJA 3O34A 4GNEA 4V3LC 4YBMA 2NAAA 3RTRB 3O35A 2CKLB 4B7YC 4L7XA 2G45A 3DWDA 2MA6A 1WEPA 2EA6A 3ZPVE 2B0OE 3HCSA 1HYJA 2KWOA 3M62A 4N4FA 2DSMA 2MUMA 3PUQA 2VJEA 1ZBDB 2XEUA 1WIMA 4OGEA 2UZGA 4WZ3B 5D1KB 1N87A 4IC2A 4O62A 2JMIA 2PUYA 1CHCA 2XOCA 3SOWA 2HYED 3M7KA 1RMDA 2M85A 4R8PK 3DPLR 2LAUA 1XWHA 5LKTA 3KQIA 5DKAA 5H1TA 3O70A 3MHHA 2L75A 2KYUA 2F6NA 2JUNA 4A0CD 1LDJB 5FB1A 3N9PA 4AYCB 3N9MA 2VJFB 3ZPV1 4LLBA 2FUUA 5D1MB 3M63A 1E4UA 4W4UA 4ZDTA 4YABA 4FJCA 3FM8C 4MSXA 5G04B 2LGGA 2CT2A 2LGVA 2KWJA 2RSDA 2KFTA 5I3LA 4S3OB 5B75A 4F52B 5FERA 2Y43A 2Y1MA 4YC9A 2JMJA 4TKPB 5TDRA 2KGGA 4GNGA 1G25A 1MM3A 1V87A 2YW8A 2JM3A 2KU3A 2CSZA 5TBNA 4O64A 3EB5A 4AVXA 4S3OC 3Q1DA 5G0FA 2BAYA 2YVRA 4H9DA 2K17A 3HCUA 2YU4A 3SHBA 1WEQA 3ZVZB 3M99A 1BORA 2CRWA 2YT5A 2FFWA 2ZETC 2LQ6A 3L1ZB 2IQJA 2YSJA 2E6SA 2MA5A 1MBMA 3ZYQA 2FSAA 2CSVA 4AUQB 2YSMA 5C11A 5TRBA 4R2YA 3C6WA 2KIZA 4GB0A 3O47A 4GNFA
chains in the Genus database with same CATH topology
2D8UA 2CRRA 2KKXA 2EXUA 2LAUA 2P57A 3JUEA 3LVQE 5SVIB 3LJUX 2EGMA 3KDEC 3MDBC 3H7HA 4QQ4A 1DCQA 2XOYA 2CRWA 2FD4A 3FM8C 5K3QA 4Z0OA 4Z0RA 2XP0A 4OGEA 2JM3A 4F1PA 3E2DA 2FFWA 5SVIA 2XOZA 3FEHA 3DDTA 5SVXA 2KKYA 2IQJA 2MKEA 3SUBA 2JUNA 2E61A 4O62A 2M13A 2RR4A 3Q1DA 2CSVA 2L7PA 3DWDA 2YVRA 2XOCA 2DJAA 5SVYA 3LVRE 3LDYA 3M7KA 3T9KA 4H9DA 2CONA 2B0OE 2YREA 3FJUB 2OWAA 4OGCA 3PLWA 3O47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MKE A;  2M13 A; 
#chains in the Genus database with same CATH topology
 3HCT A;  3LJU X;  1DCQ A;  2XOY A;  4UP5 A;  3E2D A;  2H0D A;  1DVP A;  4YBS A;  2F6J A;  1JM7 A;  3N9O A;  4YAD A;  5EYA F;  2RR4 A;  2YUR A;  4L58 A;  2LV9 A;  2VJE B;  2L0B A;  2YRE A;  2KR4 A;  2OWA A;  4FK5 A;  1WEW A;  2ECN A;  2EGP A;  2OXQ C;  3H7H A;  5LKX A;  2PNX A;  1WEU A;  5D1L B;  4BHW A;  2MD7 B;  5H9M A;  1VYX A;  4MVT A;  4PTB A;  2ECT A;  4I7B A;  3FAN A;  3ZVY A;  2CON A;  5FB0 A;  2VP7 A;  3PLW A;  2D8U A;  3O37 A;  3PUR A;  4P5O B;  2Y1N A;  2D8S A;  2G43 A;  2ECI A;  1T1H A;  3KV5 A;  4LKA A;  5SVI A;  2MKE A;  4PPE A;  3N9Q A;  3VK6 A;  3PHD A;  4WZ2 A;  4FO9 A;  3FAO A;  1LDK C;  4CA1 A;  1U6G B;  5B77 A;  3KDE C;  2MT5 A;  2XP0 A;  1Z60 A;  1MM2 A;  1WFK A;  2MIQ A;  2XOZ A;  3T6R A;  2KKY A;  1Z6U A;  5H1U A;  2QIZ A;  3SUB A;  3O33 A;  3ZNI A;  2EOD A;  3LQI A;  4IC3 A;  3L1X A;  3EB6 A;  2HDP A;  2LGK A;  5SVY A;  1WEN A;  1FP0 A;  3O7A A;  3V43 A;  1JOC A;  5AIU A;  5LCW B;  3T9K A;  2C2V S;  5KH7 A;  2KKX A;  5B79 A;  2M6M A;  3I2D A;  2LRI C;  3U5P A;  3HTK C;  4X3G A;  4YBT A;  1WEE A;  4B86 C;  2MNZ A;  2C2L A;  3FEH A;  2LDR A;  3KV6 A;  3ASL A;  2VPD A;  2KE1 A;  4BBQ A;  2L7P A;  4R7E A;  2DJA A;  3L11 A;  3LVR E;  3LDY A;  3U5O A;  5C13 A;  3FJU B;  1WEO A;  5LKU A;  2CKL A;  2I50 A;  2EXU A;  2L5U A;  3SOX A;  2K4D A;  3U5M A;  4UP0 A;  4F1P A;  4QF3 A;  5SVX A;  2ECW A;  2ECG A;  5KH3 A;  2E61 A;  2VPB A;  4CCG X;  4A4C A;  5B78 A;  2MNY A;  4A49 A;  3RPG C;  3N9N A;  3KNV A;  4NN2 A;  3IHP A;  1WIL A;  5FEY A;  1WGM A;  2RI7 A;  2H0D B;  3ZTG A;  1WE9 A;  2P57 A;  3NG2 A;  1JM7 B;  3DQV R;  2LXH C;  4QF2 A;  3GV4 A;  2F42 A;  3DDT A;  2M3H A;  4N3W A;  2K1J A;  1VD4 A;  4LAD B;  2CSY A;  2YUC A;  2LN0 A;  4WZ0 A;  5DIN A;  5G05 B;  2VNF A;  5TAB A;  2LXP C;  2L43 A;  2AN6 A;  5J3X A;  4C9Z A;  4AYC A;  2KWK A;  2VJF A;  2G6Q A;  3FL2 A;  3JUE A;  5AIT A;  4V3K C;  1WEV A;  2FD4 A;  2JRJ A;  2FUI A;  1IYM A;  1FBV A;  1F62 A;  1HYI A;  3N9L A;  2YQM A;  4FIP A;  4LJN A;  1VFY A;  5B8D A;  1X4I A;  2CRR A;  4WA6 A;  5SVI B;  2VPE A;  4I7D A;  3QZV A;  3MDB C;  3MHS A;  4AP4 A;  1Z2Q A;  3C5K A;  5H1V A;  2ECV A;  2QIC A;  1K2F A;  5TDW A;  2M1R A;  2KWN A;  2XB1 A;  2KRE A;  3T7L A;  2DX8 A;  3U5N A;  4GND A;  4YAT A;  2JMD A;  5LKZ A;  3LRQ A;  2YHN A;  4XI1 A;  2MD8 C;  5KH9 A;  1WES A;  4LK9 A;  3LVQ E;  4YAX A;  2KGI A;  2YHO A;  5B76 A;  4QQ4 A;  4A4B A;  5K3Q A;  4Z0O A;  4Z0R A;  4Q6F A;  2YYR A;  2LGL A;  3LQH A;  1X4U A;  2E6R A;  3GL6 A;  1X4J A;  2YQL A;  3SOU A;  1WEM A;  2M13 A;  4ZQL A;  5JG6 A;  3LQJ A;  2K16 A;  4ZUX U;  2VPG A;  4UI9 B;  2QJ0 A;  4OGC A;  3RPG B;  4I7C A;  2EGM A;  2IDA A;  3O36 A;  2L80 A;  2ECJ A;  3O34 A;  4GNE A;  4V3L C;  4YBM A;  2NAA A;  3RTR B;  3O35 A;  2CKL B;  4B7Y C;  4L7X A;  2G45 A;  3DWD A;  2MA6 A;  1WEP A;  2EA6 A;  3ZPV E;  2B0O E;  3HCS A;  1HYJ A;  2KWO A;  3M62 A;  4N4F A;  2DSM A;  2MUM A;  3PUQ A;  2VJE A;  1ZBD B;  2XEU A;  1WIM A;  4OGE A;  2UZG A;  4WZ3 B;  5D1K B;  1N87 A;  4IC2 A;  4O62 A;  2JMI A;  2PUY A;  1CHC A;  2XOC A;  3SOW A;  2HYE D;  3M7K A;  1RMD A;  2M85 A;  4R8P K;  3DPL R;  2LAU A;  1XWH A;  5LKT A;  3KQI A;  5DKA A;  5H1T A;  3O70 A;  3MHH A;  2L75 A;  2KYU A;  2F6N A;  2JUN A;  4A0C D;  1LDJ B;  5FB1 A;  3N9P A;  4AYC B;  3N9M A;  2VJF B;  3ZPV 1;  4LLB A;  2FUU A;  5D1M B;  3M63 A;  1E4U A;  4W4U A;  4ZDT A;  4YAB A;  4FJC A;  3FM8 C;  4MSX A;  5G04 B;  2LGG A;  2CT2 A;  2LGV A;  2KWJ A;  2RSD A;  2KFT A;  5I3L A;  4S3O B;  5B75 A;  4F52 B;  5FER A;  2Y43 A;  2Y1M A;  4YC9 A;  2JMJ A;  4TKP B;  5TDR A;  2KGG A;  4GNG A;  1G25 A;  1MM3 A;  1V87 A;  2YW8 A;  2JM3 A;  2KU3 A;  2CSZ A;  5TBN A;  4O64 A;  3EB5 A;  4AVX A;  4S3O C;  3Q1D A;  5G0F A;  2BAY A;  2YVR A;  4H9D A;  2K17 A;  3HCU A;  2YU4 A;  3SHB A;  1WEQ A;  3ZVZ B;  3M99 A;  1BOR A;  2CRW A;  2YT5 A;  2FFW A;  2ZET C;  2LQ6 A;  3L1Z B;  2IQJ A;  2YSJ A;  2E6S A;  2MA5 A;  1MBM A;  3ZYQ A;  2FSA A;  2CSV A;  4AUQ B;  2YSM A;  5C11 A;  5TRB A;  4R2Y A;  3C6W A;  2KIZ A;  4GB0 A;  3O47 A;  4GNF A; 
#chains in the Genus database with same CATH homology
 2D8U A;  2CRR A;  2KKX A;  2EXU A;  2LAU A;  2P57 A;  3JUE A;  3LVQ E;  5SVI B;  3LJU X;  2EGM A;  3KDE C;  3MDB C;  3H7H A;  4QQ4 A;  1DCQ A;  2XOY A;  2CRW A;  2FD4 A;  3FM8 C;  5K3Q A;  4Z0O A;  4Z0R A;  2XP0 A;  4OGE A;  2JM3 A;  4F1P A;  3E2D A;  2FFW A;  5SVI A;  2XOZ A;  3FEH A;  3DDT A;  5SVX A;  2KKY A;  2IQJ A;  2MKE A;  3SUB A;  2JUN A;  2E61 A;  4O62 A;  2M13 A;  2RR4 A;  3Q1D A;  2CSV A;  2L7P A;  3DWD A;  2YVR A;  2XOC A;  2DJA A;  5SVY A;  3LVR E;  3LDY A;  3M7K A;  3T9K A;  4H9D A;  2CON A;  2B0O E;  2YRE A;  3FJU B;  2OWA A;  4OGC A;  3PLW A;  3O47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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