2OWAA

Crystal structure of putative gtpase activating protein for adp ribosylation factor from cryptosporidium parvum (cgd5_1040)
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
128
structure length
128
Chain Sequence
DVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEISE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Cryptosporidium parvum iowa ii
publication title Crystal structure of putative GTPase activating protein for ADP ribosylation factor from Cryptosporidium parvum (cgd5_1040)
rcsb
molecule keywords Arfgap-like finger domain containing protein
total genus 44
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2owaA01
2CRWA 3SUBA 4F1PA 1DCQA 2OWAA 3MDBC 3T9KA 3LVRE 3DWDA 2P57A 2CRRA 3FM8C 3LVQE 2B0OE 3JUEA 3O47A 2IQJA 3FEHA 3LJUX
chains in the Genus database with same CATH superfamily
4R7EA 4LLBA 4IC2A 3N9MA 1WEQA 3RPGB 3O36A 2XP0A 2MUMA 4S3OC 3ASLA 3LDYA 3EB6A 1WEWA 2M6MA 2D8SA 3RTRB 4QF2A 1K2FA 4V3KC 1WEEA 5D1MB 3ZVZB 2LDRA 4AYCB 4Q6FA 2ECNA 4YADA 4GB0A 3ZYQA 1DCQA 2EA6A 5D1KB 3U5PA 3IHPA 2QJ0A 4LADB 4AP4A 1HYJA 5B79A 4N4FA 3GL6A 4NN2A 4YC9A 3SHBA 3N9LA 4ZDTA 2YUCA 2XB1A 4ZUXU 2KWKA 3FANA 1VFYA 4WZ0A 2KR4A 2XOCA 5D1LB 2VPEA 5B78A 1WEUA 2YT5A 5TDWA 4YATA 4WZ2A 2CSVA 3HCTA 3MHHA 1ZBDB 3PLWA 2XOZA 5I3LA 5C11A 5B76A 4ZQLA 2Y43A 5JG6A 3DQVR 3DDTA 5H1VA 2BAYA 3LVQE 5FB1A 1JOCA 5B75A 4FIPA 3O70A 2MKEA 2FD4A 2IQJA 2LGKA 2QIZA 3RPGC 4IC3A 4W4UA 5TABA 2EODA 1WEMA 4OGCA 3LVRE 3DWDA 2KGGA 2KKXA 2UZGA 5B8DA 4O64A 2L75A 2YYRA 4LKAA 1BORA 1MM2A 4GNGA 1JM7B 3Q1DA 4AYCA 1MBMA 1LDJB 2L80A 2EGMA 2I50A 2YHNA 4C9ZA 5SVIA 3ZPV1 5AITA 2KWOA 1N87A 3O37A 2G6QA 4QQ4A 2MD8C 2LQ6A 1VYXA 4LK9A 3JUEA 2YREA 3O47A 2MA5A 2L7PA 4PPEA 3LJUX 3N9NA 3C5KA 5H1TA 2CKLB 5SVXA 4AVXA 3HCSA 1X4JA 2L43A 2PNXA 3KV5A 2ECGA 3LQIA 4PTBA 3M7KA 3ZVYA 3PHDA 4GNEA 1MM3A 1E4UA 2MD7B 2K16A 3SOWA 4O62A 3SUBA 2LN0A 2EXUA 1CHCA 2CSZA 2OXQC 2ECJA 5SVIB 4Z0OA 3L11A 3KV6A 2JMJA 4CCGX 1JM7A 2Y1NA 4XI1A 5KH3A 4WA6A 1IYMA 2MA6A 2ECTA 5H1UA 3FEHA 3T7LA 1WILA 2ECIA 5TBNA 2JM3A 2KKYA 4I7DA 4A49A 5H9MA 4AUQB 1DVPA 2MNYA 5KH7A 3L1XA 2VJFB 3M62A 3PUQA 4YBMA 5TRBA 2KWNA 2E6RA 2B0OE 3EB5A 2KIZA 5LKZA 4GNFA 3LQHA 2CKLA 1XWHA 2CT2A 2K17A 4UP0A 2RSDA 2KE1A 3VK6A 4V3LC 2YW8A 2VPGA 3MDBC 2MNZA 4CA1A 2H0DB 2P57A 2CRRA 2C2VS 2YSJA 2KGIA 5SVYA 2F6JA 3O7AA 3KDEC 2PUYA 4B86C 3N9PA 2LXPC 2YHOA 2MIQA 4YABA 3M63A 3ZTGA 1VD4A 3LRQA 4R2YA 3FAOA 3ZNIA 1X4UA 2RI7A 2D8UA 4X3GA 5LKXA 1WFKA 2YURA 1WE9A 2VJEB 4B7YC 5G0FA 2JRJA 2M85A 2KU3A 3E2DA 3L1ZB 2KREA 2HYED 3O34A 5DKAA 2VPDA 1LDKC 2RR4A 4WZ3B 4L58A 1WESA 4Z0RA 2VJFA 1Z2QA 2YQMA 2KYUA 3I2DA 3U5NA 2LGLA 2XEUA 5G05B 3NG2A 2G45A 2CSYA 1V87A 3N9QA 5AIUA 2EGPA 5LKUA 2IDAA 2DX8A 2NAAA 2ECWA 2HDPA 2VPBA 3HCUA 3ZPVE 5LKTA 4I7CA 4OGEA 3FJUB 2MT5A 4N3WA 3KQIA 3T9KA 2H0DA 4R8PK 3GV4A 3U5MA 2VNFA 2KWJA 2C2LA 4FO9A 5FERA 1FP0A 2M1RA 2FUUA 1WEVA 2JMIA 2L0BA 2KFTA 3QZVA 2FSAA 4YAXA 4YBTA 2CONA 3C6WA 4TKPB 5J3XA 1FBVA 2FFWA 2YU4A 2LAUA 1Z60A 5LCWB 1HYIA 1X4IA 1WEOA 5TDRA 4F52B 2VJEA 3O35A 3SOUA 2F6NA 2LXHC 5DINA 3KNVA 2VP7A 1WIMA 3SOXA 2JUNA 2OWAA 5FEYA 2QICA 4LJNA 4FK5A 1WEPA 1RMDA 4S3OB 3U5OA 2E6SA 3T6RA 3HTKC 4P5OB 2LV9A 2FUIA 3FL2A 2G43A 5KH9A 4GNDA 2YQLA 3PURA 2ZETC 2AN6A 3H7HA 4FJCA 4YBSA 3O33A 2M3HA 5FB0A 2DJAA 2Y1MA 2M13A 2L5UA 4BHWA 3FM8C 3V43A 4BBQA 4MVTA 2YVRA 5G04B 5C13A 2JMDA 2LGVA 1G25A 2K1JA 3DPLR 3M99A 1Z6UA 2CRWA 2LGGA 2XOYA 4F1PA 5EYAF 4QF3A 1T1HA 2LRIC 1U6GB 4UI9B 4MSXA 1F62A 2F42A 4UP5A 4A4BA 3N9OA 1WENA 2ECVA 2E61A 2DSMA 2K4DA 1WGMA 4A0CD 5K3QA 4H9DA 4A4CA 5B77A 3MHSA 4I7BA 2YSMA 4L7XA 3LQJA
chains in the Genus database with same CATH topology
2EGMA 2CONA 2CRWA 4OGEA 4O62A 3SUBA 2XOYA 3E2DA 3FJUB 5SVXA 4F1PA 1DCQA 2CSVA 3H7HA 2JUNA 2OWAA 2EXUA 2FFWA 2XP0A 2RR4A 2JM3A 5SVIA 2LAUA 2DJAA 2KKYA 3MDBC 2XOZA 3PLWA 3LVRE 4OGCA 3T9KA 3DWDA 4Z0RA 3LDYA 2KKXA 2M13A 5SVIB 3DDTA 4Z0OA 2P57A 2CRRA 3FM8C 3LVQE 5SVYA 2E61A 2D8UA 4QQ4A 3M7KA 2YVRA 3Q1DA 3KDEC 5K3QA 4H9DA 2B0OE 3JUEA 2YREA 3O47A 2MKEA 2FD4A 2XOCA 2IQJA 2L7PA 3FEHA 3LJUX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CRW A;  3SUB A;  4F1P A;  1DCQ A;  2OWA A;  3MDB C;  3T9K A;  3LVR E;  3DWD A;  2P57 A;  2CRR A;  3FM8 C;  3LVQ E;  2B0O E;  3JUE A;  3O47 A;  2IQJ A;  3FEH A;  3LJU X; 
#chains in the Genus database with same CATH topology
 4R7E A;  4LLB A;  4IC2 A;  3N9M A;  1WEQ A;  3RPG B;  3O36 A;  2XP0 A;  2MUM A;  4S3O C;  3ASL A;  3LDY A;  3EB6 A;  1WEW A;  2M6M A;  2D8S A;  3RTR B;  4QF2 A;  1K2F A;  4V3K C;  1WEE A;  5D1M B;  3ZVZ B;  2LDR A;  4AYC B;  4Q6F A;  2ECN A;  4YAD A;  4GB0 A;  3ZYQ A;  1DCQ A;  2EA6 A;  5D1K B;  3U5P A;  3IHP A;  2QJ0 A;  4LAD B;  4AP4 A;  1HYJ A;  5B79 A;  4N4F A;  3GL6 A;  4NN2 A;  4YC9 A;  3SHB A;  3N9L A;  4ZDT A;  2YUC A;  2XB1 A;  4ZUX U;  2KWK A;  3FAN A;  1VFY A;  4WZ0 A;  2KR4 A;  2XOC A;  5D1L B;  2VPE A;  5B78 A;  1WEU A;  2YT5 A;  5TDW A;  4YAT A;  4WZ2 A;  2CSV A;  3HCT A;  3MHH A;  1ZBD B;  3PLW A;  2XOZ A;  5I3L A;  5C11 A;  5B76 A;  4ZQL A;  2Y43 A;  5JG6 A;  3DQV R;  3DDT A;  5H1V A;  2BAY A;  3LVQ E;  5FB1 A;  1JOC A;  5B75 A;  4FIP A;  3O70 A;  2MKE A;  2FD4 A;  2IQJ A;  2LGK A;  2QIZ A;  3RPG C;  4IC3 A;  4W4U A;  5TAB A;  2EOD A;  1WEM A;  4OGC A;  3LVR E;  3DWD A;  2KGG A;  2KKX A;  2UZG A;  5B8D A;  4O64 A;  2L75 A;  2YYR A;  4LKA A;  1BOR A;  1MM2 A;  4GNG A;  1JM7 B;  3Q1D A;  4AYC A;  1MBM A;  1LDJ B;  2L80 A;  2EGM A;  2I50 A;  2YHN A;  4C9Z A;  5SVI A;  3ZPV 1;  5AIT A;  2KWO A;  1N87 A;  3O37 A;  2G6Q A;  4QQ4 A;  2MD8 C;  2LQ6 A;  1VYX A;  4LK9 A;  3JUE A;  2YRE A;  3O47 A;  2MA5 A;  2L7P A;  4PPE A;  3LJU X;  3N9N A;  3C5K A;  5H1T A;  2CKL B;  5SVX A;  4AVX A;  3HCS A;  1X4J A;  2L43 A;  2PNX A;  3KV5 A;  2ECG A;  3LQI A;  4PTB A;  3M7K A;  3ZVY A;  3PHD A;  4GNE A;  1MM3 A;  1E4U A;  2MD7 B;  2K16 A;  3SOW A;  4O62 A;  3SUB A;  2LN0 A;  2EXU A;  1CHC A;  2CSZ A;  2OXQ C;  2ECJ A;  5SVI B;  4Z0O A;  3L11 A;  3KV6 A;  2JMJ A;  4CCG X;  1JM7 A;  2Y1N A;  4XI1 A;  5KH3 A;  4WA6 A;  1IYM A;  2MA6 A;  2ECT A;  5H1U A;  3FEH A;  3T7L A;  1WIL A;  2ECI A;  5TBN A;  2JM3 A;  2KKY A;  4I7D A;  4A49 A;  5H9M A;  4AUQ B;  1DVP A;  2MNY A;  5KH7 A;  3L1X A;  2VJF B;  3M62 A;  3PUQ A;  4YBM A;  5TRB A;  2KWN A;  2E6R A;  2B0O E;  3EB5 A;  2KIZ A;  5LKZ A;  4GNF A;  3LQH A;  2CKL A;  1XWH A;  2CT2 A;  2K17 A;  4UP0 A;  2RSD A;  2KE1 A;  3VK6 A;  4V3L C;  2YW8 A;  2VPG A;  3MDB C;  2MNZ A;  4CA1 A;  2H0D B;  2P57 A;  2CRR A;  2C2V S;  2YSJ A;  2KGI A;  5SVY A;  2F6J A;  3O7A A;  3KDE C;  2PUY A;  4B86 C;  3N9P A;  2LXP C;  2YHO A;  2MIQ A;  4YAB A;  3M63 A;  3ZTG A;  1VD4 A;  3LRQ A;  4R2Y A;  3FAO A;  3ZNI A;  1X4U A;  2RI7 A;  2D8U A;  4X3G A;  5LKX A;  1WFK A;  2YUR A;  1WE9 A;  2VJE B;  4B7Y C;  5G0F A;  2JRJ A;  2M85 A;  2KU3 A;  3E2D A;  3L1Z B;  2KRE A;  2HYE D;  3O34 A;  5DKA A;  2VPD A;  1LDK C;  2RR4 A;  4WZ3 B;  4L58 A;  1WES A;  4Z0R A;  2VJF A;  1Z2Q A;  2YQM A;  2KYU A;  3I2D A;  3U5N A;  2LGL A;  2XEU A;  5G05 B;  3NG2 A;  2G45 A;  2CSY A;  1V87 A;  3N9Q A;  5AIU A;  2EGP A;  5LKU A;  2IDA A;  2DX8 A;  2NAA A;  2ECW A;  2HDP A;  2VPB A;  3HCU A;  3ZPV E;  5LKT A;  4I7C A;  4OGE A;  3FJU B;  2MT5 A;  4N3W A;  3KQI A;  3T9K A;  2H0D A;  4R8P K;  3GV4 A;  3U5M A;  2VNF A;  2KWJ A;  2C2L A;  4FO9 A;  5FER A;  1FP0 A;  2M1R A;  2FUU A;  1WEV A;  2JMI A;  2L0B A;  2KFT A;  3QZV A;  2FSA A;  4YAX A;  4YBT A;  2CON A;  3C6W A;  4TKP B;  5J3X A;  1FBV A;  2FFW A;  2YU4 A;  2LAU A;  1Z60 A;  5LCW B;  1HYI A;  1X4I A;  1WEO A;  5TDR A;  4F52 B;  2VJE A;  3O35 A;  3SOU A;  2F6N A;  2LXH C;  5DIN A;  3KNV A;  2VP7 A;  1WIM A;  3SOX A;  2JUN A;  2OWA A;  5FEY A;  2QIC A;  4LJN A;  4FK5 A;  1WEP A;  1RMD A;  4S3O B;  3U5O A;  2E6S A;  3T6R A;  3HTK C;  4P5O B;  2LV9 A;  2FUI A;  3FL2 A;  2G43 A;  5KH9 A;  4GND A;  2YQL A;  3PUR A;  2ZET C;  2AN6 A;  3H7H A;  4FJC A;  4YBS A;  3O33 A;  2M3H A;  5FB0 A;  2DJA A;  2Y1M A;  2M13 A;  2L5U A;  4BHW A;  3FM8 C;  3V43 A;  4BBQ A;  4MVT A;  2YVR A;  5G04 B;  5C13 A;  2JMD A;  2LGV A;  1G25 A;  2K1J A;  3DPL R;  3M99 A;  1Z6U A;  2CRW A;  2LGG A;  2XOY A;  4F1P A;  5EYA F;  4QF3 A;  1T1H A;  2LRI C;  1U6G B;  4UI9 B;  4MSX A;  1F62 A;  2F42 A;  4UP5 A;  4A4B A;  3N9O A;  1WEN A;  2ECV A;  2E61 A;  2DSM A;  2K4D A;  1WGM A;  4A0C D;  5K3Q A;  4H9D A;  4A4C A;  5B77 A;  3MHS A;  4I7B A;  2YSM A;  4L7X A;  3LQJ A; 
#chains in the Genus database with same CATH homology
 2EGM A;  2CON A;  2CRW A;  4OGE A;  4O62 A;  3SUB A;  2XOY A;  3E2D A;  3FJU B;  5SVX A;  4F1P A;  1DCQ A;  2CSV A;  3H7H A;  2JUN A;  2OWA A;  2EXU A;  2FFW A;  2XP0 A;  2RR4 A;  2JM3 A;  5SVI A;  2LAU A;  2DJA A;  2KKY A;  3MDB C;  2XOZ A;  3PLW A;  3LVR E;  4OGC A;  3T9K A;  3DWD A;  4Z0R A;  3LDY A;  2KKX A;  2M13 A;  5SVI B;  3DDT A;  4Z0O A;  2P57 A;  2CRR A;  3FM8 C;  3LVQ E;  5SVY A;  2E61 A;  2D8U A;  4QQ4 A;  3M7K A;  2YVR A;  3Q1D A;  3KDE C;  5K3Q A;  4H9D A;  2B0O E;  3JUE A;  2YRE A;  3O47 A;  2MKE A;  2FD4 A;  2XOC A;  2IQJ A;  2L7P A;  3FEH A;  3LJU X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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