2OWAA

Crystal structure of putative gtpase activating protein for adp ribosylation factor from cryptosporidium parvum (cgd5_1040)
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
128
structure length
128
Chain Sequence
DVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEISE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Arfgap-like finger domain containing protein
publication title Crystal structure of putative GTPase activating protein for ADP ribosylation factor from Cryptosporidium parvum (cgd5_1040)
rcsb
source organism Cryptosporidium parvum iowa ii
molecule tags Protein transport
total genus 44
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2owaA01
2OWAA 1DCQA 2CRRA 3LVQE 3T9KA 3JUEA 2B0OE 3LVRE 2P57A 3DWDA 2CRWA 2IQJA 3O47A 3MDBC 4F1PA 3FEHA 3SUBA 3LJUX 3FM8C
chains in the Genus database with same CATH superfamily
5B8DA 2CONA 4LJNA 1N87A 2KWKA 1E4UA 2VP7A 2VJFA 3LQHA 2YU4A 5LCWB 1WENA 3Q1DA 2JRJA 2FD4A 2LRIC 5DKAA 4LADB 3LJUX 2H0DB 4GNDA 5LKXA 5KH7A 2VPEA 3T7LA 2YYRA 4B7YC 5LKZA 5J3XA 2EGMA 4P5OB 2JUNA 1WEEA 5G0FA 1MM2A 3O33A 4LK9A 3N9MA 4PPEA 3KQIA 4L58A 5LKUA 4ZQLA 4C9ZA 3ZTGA 2M3HA 2L80A 5SVIB 4A0CD 1WE9A 2JMDA 4FK5A 2M85A 4TKPB 3FL2A 2AN6A 2KKXA 2CKLA 4GNEA 2L43A 2LDRA 2XOZA 1LDKC 2E6SA 3HTKC 5EYAF 4GB0A 4MVTA 4YABA 2CRWA 2M6MA 5H1UA 1RMDA 3O36A 5H1VA 4LLBA 3KV6A 1X4JA 2OXQC 2MA6A 3NG2A 3SOWA 4R2YA 4FO9A 1JOCA 2MT5A 2L75A 3LVQE 3PHDA 1Z60A 3MHSA 4AUQB 1U6GB 4YC9A 2EA6A 1V87A 4UI9B 3SUBA 4IC3A 2ECJA 4YADA 2DJAA 3I2DA 2MD7B 2LN0A 3DDTA 2FUIA 1FBVA 1CHCA 2LGGA 3H7HA 2YW8A 2CRRA 2MA5A 3FJUB 2XP0A 2KWOA 2LXPC 2P57A 3N9NA 2FFWA 1G25A 3V43A 2VPBA 3DPLR 1WGMA 3EB6A 1WEQA 2ECGA 2L5UA 1WEUA 2KKYA 3FM8C 5KH9A 3U5MA 2F6NA 4O62A 2KIZA 2QICA 3U5OA 4A4CA 1WIMA 2KU3A 3KNVA 2G6QA 2L0BA 5TDRA 5C11A 1WEOA 4W4UA 2C2VS 4A49A 3C6WA 2QJ0A 2LQ6A 4AYCB 1WFKA 3L11A 5D1MB 1F62A 3O7AA 2KGGA 5SVYA 5FEYA 2VPGA 1X4IA 2D8SA 1T1HA 4QF2A 4OGCA 3N9PA 2LAUA 3KDEC 1X4UA 4V3LC 3RPGB 1Z6UA 2IQJA 4YBTA 2YSJA 4F1PA 2F42A 3SOXA 5AITA 1HYIA 4N4FA 5TABA 1WEVA 3ZPVE 2KR4A 4OGEA 2XOYA 5K3QA 3LDYA 2LXHC 5I3LA 2EODA 2NAAA 2E61A 2IDAA 5FB0A 2HDPA 2YURA 5SVXA 2YQMA 3O47A 4B86C 1BORA 4Z0RA 2QIZA 5AIUA 4CCGX 5B77A 4Q6FA 2VJFB 2JMIA 3GL6A 2YHOA 3ZPV1 1WEPA 5B76A 2KWNA 4MSXA 3ZVYA 4LKAA 2DSMA 4UP5A 1DVPA 3U5NA 4A4BA 4I7BA 5H9MA 2L7PA 4YAXA 2H0DA 2MUMA 4YBSA 2DX8A 2YUCA 2YQLA 2VNFA 2LV9A 3JUEA 1HYJA 2KREA 2ZETC 5JG6A 5KH3A 2ECNA 2FUUA 5D1KB 4CA1A 3HCUA 2EXUA 2CKLB 3U5PA 1MM3A 1VFYA 2ECTA 4NN2A 4O64A 3M7KA 4QF3A 2BAYA 2YREA 1DCQA 2XB1A 2FSAA 5TBNA 2LGLA 2D8UA 4S3OB 2KE1A 3L1ZB 4AVXA 4WZ2A 3HCSA 2Y1MA 5FERA 2JM3A 5DINA 2F6JA 2UZGA 5C13A 5TDWA 4WA6A 4IC2A 2CSVA 5FB1A 2PNXA 5B78A 3ZNIA 1JM7A 4XI1A 1WESA 4F52B 5D1LB 4X3GA 3N9OA 3ZYQA 3O34A 1WEMA 2KFTA 2LGKA 3T6RA 2M13A 4V3KC 3LQIA 2EGPA 2K17A 2MIQA 2KWJA 3N9QA 2CT2A 3PLWA 2KYUA 4FIPA 3LRQA 4AP4A 1WILA 2ECVA 2YVRA 2M1RA 3T9KA 2E6RA 2HYED 2KGIA 5TRBA 4UP0A 3RTRB 5H1TA 4QQ4A 5G05B 4ZDTA 2VJEA 3FEHA 1VYXA 1FP0A 4FJCA 3QZVA 4S3OC 1K2FA 2YT5A 2K1JA 1VD4A 4R8PK 4ZUXU 2CSYA 2RSDA 4YATA 1IYMA 2Y43A 2G45A 4L7XA 3LVRE 4R7EA 3E2DA 4I7DA 2MKEA 4PTBA 2YSMA 2LGVA 3C5KA 1WEWA 1XWHA 3M99A 4WZ0A 2K16A 4AYCA 2ECWA 1JM7B 2MD8C 1ZBDB 3PUQA 4WZ3B 3RPGC 3FANA 5B79A 3LQJA 2OWAA 3ZVZB 3SHBA 4GNFA 3O35A 2Y1NA 2B0OE 3IHPA 2JMJA 2XOCA 2K4DA 5G04B 1MBMA 4BBQA 2CSZA 3DQVR 4I7CA 2RR4A 3N9LA 3MDBC 2I50A 3KV5A 3O70A 2YHNA 4Z0OA 1Z2QA 2PUYA 5B75A 4H9DA 5SVIA 2MNYA 4BHWA 2VPDA 1LDJB 2XEUA 2ECIA 2VJEB 3GV4A 3HCTA 4YBMA 3DWDA 3EB5A 3ASLA 3O37A 2C2LA 3M63A 2RI7A 3L1XA 5LKTA 2G43A 3SOUA 2MNZA 3VK6A 4GNGA 3PURA 4N3WA 3MHHA 3FAOA 3M62A
chains in the Genus database with same CATH topology
4H9DA 5SVIA 2CONA 2L7PA 2KKXA 2EGMA 2JUNA 1DCQA 2OWAA 2XOYA 2YREA 2YVRA 2CRRA 3H7HA 5K3QA 3LVQE 3FJUB 3T9KA 3LDYA 2XP0A 4OGCA 2LAUA 3JUEA 3KDEC 2B0OE 2D8UA 2XOZA 2P57A 3LVRE 2XOCA 3DWDA 2E61A 3E2DA 2MKEA 2FFWA 2CRWA 2RR4A 3Q1DA 2IQJA 4QQ4A 5SVXA 3O47A 3MDBC 4F1PA 2JM3A 2FD4A 4Z0RA 3FEHA 5SVIB 3SUBA 2M13A 2DJAA 2EXUA 3LJUX 2KKYA 3FM8C 4Z0OA 4O62A 3PLWA 5SVYA 3DDTA 3M7KA 4OGEA 2CSVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWA A;  1DCQ A;  2CRR A;  3LVQ E;  3T9K A;  3JUE A;  2B0O E;  3LVR E;  2P57 A;  3DWD A;  2CRW A;  2IQJ A;  3O47 A;  3MDB C;  4F1P A;  3FEH A;  3SUB A;  3LJU X;  3FM8 C; 
#chains in the Genus database with same CATH topology
 5B8D A;  2CON A;  4LJN A;  1N87 A;  2KWK A;  1E4U A;  2VP7 A;  2VJF A;  3LQH A;  2YU4 A;  5LCW B;  1WEN A;  3Q1D A;  2JRJ A;  2FD4 A;  2LRI C;  5DKA A;  4LAD B;  3LJU X;  2H0D B;  4GND A;  5LKX A;  5KH7 A;  2VPE A;  3T7L A;  2YYR A;  4B7Y C;  5LKZ A;  5J3X A;  2EGM A;  4P5O B;  2JUN A;  1WEE A;  5G0F A;  1MM2 A;  3O33 A;  4LK9 A;  3N9M A;  4PPE A;  3KQI A;  4L58 A;  5LKU A;  4ZQL A;  4C9Z A;  3ZTG A;  2M3H A;  2L80 A;  5SVI B;  4A0C D;  1WE9 A;  2JMD A;  4FK5 A;  2M85 A;  4TKP B;  3FL2 A;  2AN6 A;  2KKX A;  2CKL A;  4GNE A;  2L43 A;  2LDR A;  2XOZ A;  1LDK C;  2E6S A;  3HTK C;  5EYA F;  4GB0 A;  4MVT A;  4YAB A;  2CRW A;  2M6M A;  5H1U A;  1RMD A;  3O36 A;  5H1V A;  4LLB A;  3KV6 A;  1X4J A;  2OXQ C;  2MA6 A;  3NG2 A;  3SOW A;  4R2Y A;  4FO9 A;  1JOC A;  2MT5 A;  2L75 A;  3LVQ E;  3PHD A;  1Z60 A;  3MHS A;  4AUQ B;  1U6G B;  4YC9 A;  2EA6 A;  1V87 A;  4UI9 B;  3SUB A;  4IC3 A;  2ECJ A;  4YAD A;  2DJA A;  3I2D A;  2MD7 B;  2LN0 A;  3DDT A;  2FUI A;  1FBV A;  1CHC A;  2LGG A;  3H7H A;  2YW8 A;  2CRR A;  2MA5 A;  3FJU B;  2XP0 A;  2KWO A;  2LXP C;  2P57 A;  3N9N A;  2FFW A;  1G25 A;  3V43 A;  2VPB A;  3DPL R;  1WGM A;  3EB6 A;  1WEQ A;  2ECG A;  2L5U A;  1WEU A;  2KKY A;  3FM8 C;  5KH9 A;  3U5M A;  2F6N A;  4O62 A;  2KIZ A;  2QIC A;  3U5O A;  4A4C A;  1WIM A;  2KU3 A;  3KNV A;  2G6Q A;  2L0B A;  5TDR A;  5C11 A;  1WEO A;  4W4U A;  2C2V S;  4A49 A;  3C6W A;  2QJ0 A;  2LQ6 A;  4AYC B;  1WFK A;  3L11 A;  5D1M B;  1F62 A;  3O7A A;  2KGG A;  5SVY A;  5FEY A;  2VPG A;  1X4I A;  2D8S A;  1T1H A;  4QF2 A;  4OGC A;  3N9P A;  2LAU A;  3KDE C;  1X4U A;  4V3L C;  3RPG B;  1Z6U A;  2IQJ A;  4YBT A;  2YSJ A;  4F1P A;  2F42 A;  3SOX A;  5AIT A;  1HYI A;  4N4F A;  5TAB A;  1WEV A;  3ZPV E;  2KR4 A;  4OGE A;  2XOY A;  5K3Q A;  3LDY A;  2LXH C;  5I3L A;  2EOD A;  2NAA A;  2E61 A;  2IDA A;  5FB0 A;  2HDP A;  2YUR A;  5SVX A;  2YQM A;  3O47 A;  4B86 C;  1BOR A;  4Z0R A;  2QIZ A;  5AIU A;  4CCG X;  5B77 A;  4Q6F A;  2VJF B;  2JMI A;  3GL6 A;  2YHO A;  3ZPV 1;  1WEP A;  5B76 A;  2KWN A;  4MSX A;  3ZVY A;  4LKA A;  2DSM A;  4UP5 A;  1DVP A;  3U5N A;  4A4B A;  4I7B A;  5H9M A;  2L7P A;  4YAX A;  2H0D A;  2MUM A;  4YBS A;  2DX8 A;  2YUC A;  2YQL A;  2VNF A;  2LV9 A;  3JUE A;  1HYJ A;  2KRE A;  2ZET C;  5JG6 A;  5KH3 A;  2ECN A;  2FUU A;  5D1K B;  4CA1 A;  3HCU A;  2EXU A;  2CKL B;  3U5P A;  1MM3 A;  1VFY A;  2ECT A;  4NN2 A;  4O64 A;  3M7K A;  4QF3 A;  2BAY A;  2YRE A;  1DCQ A;  2XB1 A;  2FSA A;  5TBN A;  2LGL A;  2D8U A;  4S3O B;  2KE1 A;  3L1Z B;  4AVX A;  4WZ2 A;  3HCS A;  2Y1M A;  5FER A;  2JM3 A;  5DIN A;  2F6J A;  2UZG A;  5C13 A;  5TDW A;  4WA6 A;  4IC2 A;  2CSV A;  5FB1 A;  2PNX A;  5B78 A;  3ZNI A;  1JM7 A;  4XI1 A;  1WES A;  4F52 B;  5D1L B;  4X3G A;  3N9O A;  3ZYQ A;  3O34 A;  1WEM A;  2KFT A;  2LGK A;  3T6R A;  2M13 A;  4V3K C;  3LQI A;  2EGP A;  2K17 A;  2MIQ A;  2KWJ A;  3N9Q A;  2CT2 A;  3PLW A;  2KYU A;  4FIP A;  3LRQ A;  4AP4 A;  1WIL A;  2ECV A;  2YVR A;  2M1R A;  3T9K A;  2E6R A;  2HYE D;  2KGI A;  5TRB A;  4UP0 A;  3RTR B;  5H1T A;  4QQ4 A;  5G05 B;  4ZDT A;  2VJE A;  3FEH A;  1VYX A;  1FP0 A;  4FJC A;  3QZV A;  4S3O C;  1K2F A;  2YT5 A;  2K1J A;  1VD4 A;  4R8P K;  4ZUX U;  2CSY A;  2RSD A;  4YAT A;  1IYM A;  2Y43 A;  2G45 A;  4L7X A;  3LVR E;  4R7E A;  3E2D A;  4I7D A;  2MKE A;  4PTB A;  2YSM A;  2LGV A;  3C5K A;  1WEW A;  1XWH A;  3M99 A;  4WZ0 A;  2K16 A;  4AYC A;  2ECW A;  1JM7 B;  2MD8 C;  1ZBD B;  3PUQ A;  4WZ3 B;  3RPG C;  3FAN A;  5B79 A;  3LQJ A;  2OWA A;  3ZVZ B;  3SHB A;  4GNF A;  3O35 A;  2Y1N A;  2B0O E;  3IHP A;  2JMJ A;  2XOC A;  2K4D A;  5G04 B;  1MBM A;  4BBQ A;  2CSZ A;  3DQV R;  4I7C A;  2RR4 A;  3N9L A;  3MDB C;  2I50 A;  3KV5 A;  3O70 A;  2YHN A;  4Z0O A;  1Z2Q A;  2PUY A;  5B75 A;  4H9D A;  5SVI A;  2MNY A;  4BHW A;  2VPD A;  1LDJ B;  2XEU A;  2ECI A;  2VJE B;  3GV4 A;  3HCT A;  4YBM A;  3DWD A;  3EB5 A;  3ASL A;  3O37 A;  2C2L A;  3M63 A;  2RI7 A;  3L1X A;  5LKT A;  2G43 A;  3SOU A;  2MNZ A;  3VK6 A;  4GNG A;  3PUR A;  4N3W A;  3MHH A;  3FAO A;  3M62 A; 
#chains in the Genus database with same CATH homology
 4H9D A;  5SVI A;  2CON A;  2L7P A;  2KKX A;  2EGM A;  2JUN A;  1DCQ A;  2OWA A;  2XOY A;  2YRE A;  2YVR A;  2CRR A;  3H7H A;  5K3Q A;  3LVQ E;  3FJU B;  3T9K A;  3LDY A;  2XP0 A;  4OGC A;  2LAU A;  3JUE A;  3KDE C;  2B0O E;  2D8U A;  2XOZ A;  2P57 A;  3LVR E;  2XOC A;  3DWD A;  2E61 A;  3E2D A;  2MKE A;  2FFW A;  2CRW A;  2RR4 A;  3Q1D A;  2IQJ A;  4QQ4 A;  5SVX A;  3O47 A;  3MDB C;  4F1P A;  2JM3 A;  2FD4 A;  4Z0R A;  3FEH A;  5SVI B;  3SUB A;  2M13 A;  2DJA A;  2EXU A;  3LJU X;  2KKY A;  3FM8 C;  4Z0O A;  4O62 A;  3PLW A;  5SVY A;  3DDT A;  3M7K A;  4OGE A;  2CSV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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