2P57A

Gap domain of znf289, an id1-regulated zinc finger protein
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
124
structure length
124
Chain Sequence
EPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
source organism Homo sapiens
publication title GAP domain of ZNF289, an ID1-regulated zinc finger protein
rcsb
molecule keywords GTPase-activating protein ZNF289
total genus 43
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2007-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2p57A00
3FM8C 1DCQA 2CRWA 2OWAA 3LJUX 3O47A 2P57A 3LVQE 3MDBC 4F1PA 3T9KA 2B0OE 2IQJA 2CRRA 3SUBA 3JUEA 3FEHA 3LVRE 3DWDA
chains in the Genus database with same CATH superfamily
4UI9B 2KGGA 5C13A 3N9PA 2DJAA 1X4IA 2VPEA 2CONA 3U5OA 4A0CD 2EGMA 2JM3A 4WA6A 2EODA 5KH7A 2LV9A 2ZETC 3C6WA 2MD8C 2LDRA 1MM2A 5SVIB 1X4UA 4WZ0A 2ECWA 5H1UA 3MHHA 3DWDA 3GV4A 5B77A 1VYXA 2XOCA 2VJEB 3KDEC 2YURA 1IYMA 2CSZA 5JG6A 2PNXA 3ZTGA 2LGLA 3LVQE 3KQIA 3SOWA 4F1PA 4ZUXU 4H9DA 2ECTA 2CT2A 3N9NA 2K1JA 4L58A 4A4CA 1WEEA 2KYUA 1F62A 2CRWA 3M99A 5TABA 4AP4A 4ZDTA 2KKXA 1VD4A 2H0DB 2Y1NA 2LXHC 4LADB 5J3XA 5I3LA 2IQJA 2PUYA 2CSVA 4AVXA 1WEPA 4FIPA 3KNVA 3PLWA 1WEVA 2L7PA 2CKLA 3O7AA 3LQHA 3L1XA 3HTKC 4A4BA 1WENA 1WIMA 2FD4A 2YQMA 4YC9A 3IHPA 4MSXA 2XB1A 2D8UA 3RPGB 5LKZA 4C9ZA 3PURA 2D8SA 1WE9A 1MM3A 4FK5A 2YQLA 2OXQC 4R7EA 2LGVA 5G0FA 5AIUA 2MA6A 5G05B 2FUUA 1DCQA 1LDKC 3N9QA 3SHBA 3LDYA 3DPLR 1JOCA 1WILA 3L11A 2LN0A 4FJCA 4R2YA 4OGCA 2DSMA 4LJNA 1T1HA 3ZVYA 5B78A 2F6NA 2VJFA 2QIZA 4BHWA 2AN6A 4I7CA 3EB6A 5AITA 1ZBDB 1MBMA 3HCSA 2I50A 4YBTA 3DDTA 2KU3A 3LJUX 2VP7A 2JMDA 5SVYA 4L7XA 2XOYA 5FERA 4W4UA 1WFKA 3NG2A 4FO9A 2KGIA 1WGMA 2MD7B 1K2FA 2YSJA 2QICA 2ECIA 2YU4A 2CSYA 4BBQA 2QJ0A 2LXPC 5K3QA 2MIQA 1HYIA 2L43A 4YADA 5H1VA 1JM7B 4NN2A 4ZQLA 2LRIC 4YATA 3O33A 4AYCA 2KFTA 2YHNA 2G6QA 2CKLB 3H7HA 4YBMA 3RTRB 1X4JA 3FEHA 4AUQB 2M13A 2EGPA 2JUNA 2UZGA 4B7YC 3U5NA 3PHDA 2VPDA 3FJUB 2G43A 2LGKA 3C5KA 1V87A 4XI1A 1CHCA 1WEMA 2F42A 2KWOA 5D1KB 2FFWA 2B0OE 2RSDA 5DINA 5SVIA 2M6MA 2ECVA 3V43A 3LVRE 2L75A 2C2LA 2HDPA 2KE1A 3N9OA 2YREA 3E2DA 2OWAA 4O64A 1N87A 1FP0A 4GNDA 5KH9A 2P57A 2MUMA 3LRQA 3FANA 4GNEA 5H9MA 4B86C 4P5OB 5LCWB 3ZPV1 4OGEA 2JMIA 4YABA 5B76A 3ZPVE 3O37A 2LQ6A 5TBNA 3RPGC 2YYRA 3LQJA 3MHSA 5C11A 3FM8C 2K17A 3VK6A 2JMJA 2MNZA 4GNFA 4WZ2A 5TDWA 5G04B 5FB1A 4CA1A 2YVRA 2KWJA 1E4UA 2ECNA 2YUCA 1WEOA 2MNYA 2H0DA 2KWKA 3SUBA 3DQVR 3Q1DA 2KIZA 1FBVA 1Z2QA 4QF3A 3T6RA 3ZYQA 4Z0RA 1Z6UA 1Z60A 2G45A 2E6SA 2DX8A 2LGGA 4R8PK 3LQIA 3U5PA 1VFYA 2L0BA 4F52B 2YHOA 4UP0A 1WEUA 2RI7A 2KWNA 5D1LB 3L1ZB 4O62A 2E61A 2M1RA 1WEWA 1WEQA 2VNFA 4PTBA 2RR4A 1U6GB 2ECJA 3ZNIA 2EXUA 3O47A 3ASLA 3PUQA 2Y1MA 5FEYA 3EB5A 3ZVZB 2K16A 2KR4A 2M3HA 5DKAA 4I7BA 3M63A 4YAXA 3QZVA 2KKYA 4IC2A 2BAYA 5TDRA 5H1TA 3T7LA 5B75A 4A49A 5D1MB 2FSAA 2MA5A 2XEUA 2KREA 2NAAA 4X3GA 5SVXA 4QF2A 3SOUA 2L5UA 4TKPB 3KV5A 1XWHA 4LKAA 2XOZA 5LKUA 2YW8A 3HCTA 2VPGA 2CRRA 2K4DA 1LDJB 5LKXA 2MT5A 2F6JA 3O34A 3O70A 3N9LA 5TRBA 3HCUA 1DVPA 2IDAA 2L80A 4V3KC 4N4FA 1HYJA 2EA6A 2VJEA 1JM7A 2VJFB 3FL2A 5B79A 2C2VS 2M85A 2FUIA 2VPBA 1RMDA 4MVTA 3FAOA 2Y43A 2HYED 1G25A 4CCGX 3KV6A 4S3OB 2LAUA 2E6RA 3O35A 2YSMA 2YT5A 3MDBC 3SOXA 4S3OC 2XP0A 5EYAF 2ECGA 4GB0A 5FB0A 3JUEA 4IC3A 4Q6FA 2JRJA 4YBSA 3GL6A 5B8DA 4I7DA 1BORA 4V3LC 5KH3A 1WESA 3N9MA 4AYCB 4QQ4A 4LK9A 2MKEA 3I2DA 3M7KA 4LLBA 4Z0OA 3T9KA 3M62A 3U5MA 4PPEA 3O36A 5LKTA 4WZ3B 4GNGA 4UP5A 4N3WA
chains in the Genus database with same CATH topology
2L7PA 3DDTA 2JUNA 2XOCA 2RR4A 4Z0RA 2YREA 3E2DA 3KDEC 3FM8C 3FJUB 2EXUA 1DCQA 2CRWA 2LAUA 2OWAA 3LJUX 2DJAA 3O47A 5SVYA 3LDYA 5SVXA 2XOYA 2CONA 2YVRA 2FD4A 5K3QA 4QQ4A 2P57A 2EGMA 3LVQE 2JM3A 2KKXA 2MKEA 3MDBC 3M7KA 2XOZA 4OGCA 4F1PA 2XP0A 4Z0OA 3T9KA 2D8UA 2FFWA 4H9DA 5SVIB 2B0OE 2IQJA 2CRRA 2KKYA 2CSVA 3H7HA 3SUBA 3Q1DA 4O62A 3JUEA 2E61A 4OGEA 3PLWA 5SVIA 3FEHA 2M13A 3LVRE 3DWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FM8 C;  1DCQ A;  2CRW A;  2OWA A;  3LJU X;  3O47 A;  2P57 A;  3LVQ E;  3MDB C;  4F1P A;  3T9K A;  2B0O E;  2IQJ A;  2CRR A;  3SUB A;  3JUE A;  3FEH A;  3LVR E;  3DWD A; 
#chains in the Genus database with same CATH topology
 4UI9 B;  2KGG A;  5C13 A;  3N9P A;  2DJA A;  1X4I A;  2VPE A;  2CON A;  3U5O A;  4A0C D;  2EGM A;  2JM3 A;  4WA6 A;  2EOD A;  5KH7 A;  2LV9 A;  2ZET C;  3C6W A;  2MD8 C;  2LDR A;  1MM2 A;  5SVI B;  1X4U A;  4WZ0 A;  2ECW A;  5H1U A;  3MHH A;  3DWD A;  3GV4 A;  5B77 A;  1VYX A;  2XOC A;  2VJE B;  3KDE C;  2YUR A;  1IYM A;  2CSZ A;  5JG6 A;  2PNX A;  3ZTG A;  2LGL A;  3LVQ E;  3KQI A;  3SOW A;  4F1P A;  4ZUX U;  4H9D A;  2ECT A;  2CT2 A;  3N9N A;  2K1J A;  4L58 A;  4A4C A;  1WEE A;  2KYU A;  1F62 A;  2CRW A;  3M99 A;  5TAB A;  4AP4 A;  4ZDT A;  2KKX A;  1VD4 A;  2H0D B;  2Y1N A;  2LXH C;  4LAD B;  5J3X A;  5I3L A;  2IQJ A;  2PUY A;  2CSV A;  4AVX A;  1WEP A;  4FIP A;  3KNV A;  3PLW A;  1WEV A;  2L7P A;  2CKL A;  3O7A A;  3LQH A;  3L1X A;  3HTK C;  4A4B A;  1WEN A;  1WIM A;  2FD4 A;  2YQM A;  4YC9 A;  3IHP A;  4MSX A;  2XB1 A;  2D8U A;  3RPG B;  5LKZ A;  4C9Z A;  3PUR A;  2D8S A;  1WE9 A;  1MM3 A;  4FK5 A;  2YQL A;  2OXQ C;  4R7E A;  2LGV A;  5G0F A;  5AIU A;  2MA6 A;  5G05 B;  2FUU A;  1DCQ A;  1LDK C;  3N9Q A;  3SHB A;  3LDY A;  3DPL R;  1JOC A;  1WIL A;  3L11 A;  2LN0 A;  4FJC A;  4R2Y A;  4OGC A;  2DSM A;  4LJN A;  1T1H A;  3ZVY A;  5B78 A;  2F6N A;  2VJF A;  2QIZ A;  4BHW A;  2AN6 A;  4I7C A;  3EB6 A;  5AIT A;  1ZBD B;  1MBM A;  3HCS A;  2I50 A;  4YBT A;  3DDT A;  2KU3 A;  3LJU X;  2VP7 A;  2JMD A;  5SVY A;  4L7X A;  2XOY A;  5FER A;  4W4U A;  1WFK A;  3NG2 A;  4FO9 A;  2KGI A;  1WGM A;  2MD7 B;  1K2F A;  2YSJ A;  2QIC A;  2ECI A;  2YU4 A;  2CSY A;  4BBQ A;  2QJ0 A;  2LXP C;  5K3Q A;  2MIQ A;  1HYI A;  2L43 A;  4YAD A;  5H1V A;  1JM7 B;  4NN2 A;  4ZQL A;  2LRI C;  4YAT A;  3O33 A;  4AYC A;  2KFT A;  2YHN A;  2G6Q A;  2CKL B;  3H7H A;  4YBM A;  3RTR B;  1X4J A;  3FEH A;  4AUQ B;  2M13 A;  2EGP A;  2JUN A;  2UZG A;  4B7Y C;  3U5N A;  3PHD A;  2VPD A;  3FJU B;  2G43 A;  2LGK A;  3C5K A;  1V87 A;  4XI1 A;  1CHC A;  1WEM A;  2F42 A;  2KWO A;  5D1K B;  2FFW A;  2B0O E;  2RSD A;  5DIN A;  5SVI A;  2M6M A;  2ECV A;  3V43 A;  3LVR E;  2L75 A;  2C2L A;  2HDP A;  2KE1 A;  3N9O A;  2YRE A;  3E2D A;  2OWA A;  4O64 A;  1N87 A;  1FP0 A;  4GND A;  5KH9 A;  2P57 A;  2MUM A;  3LRQ A;  3FAN A;  4GNE A;  5H9M A;  4B86 C;  4P5O B;  5LCW B;  3ZPV 1;  4OGE A;  2JMI A;  4YAB A;  5B76 A;  3ZPV E;  3O37 A;  2LQ6 A;  5TBN A;  3RPG C;  2YYR A;  3LQJ A;  3MHS A;  5C11 A;  3FM8 C;  2K17 A;  3VK6 A;  2JMJ A;  2MNZ A;  4GNF A;  4WZ2 A;  5TDW A;  5G04 B;  5FB1 A;  4CA1 A;  2YVR A;  2KWJ A;  1E4U A;  2ECN A;  2YUC A;  1WEO A;  2MNY A;  2H0D A;  2KWK A;  3SUB A;  3DQV R;  3Q1D A;  2KIZ A;  1FBV A;  1Z2Q A;  4QF3 A;  3T6R A;  3ZYQ A;  4Z0R A;  1Z6U A;  1Z60 A;  2G45 A;  2E6S A;  2DX8 A;  2LGG A;  4R8P K;  3LQI A;  3U5P A;  1VFY A;  2L0B A;  4F52 B;  2YHO A;  4UP0 A;  1WEU A;  2RI7 A;  2KWN A;  5D1L B;  3L1Z B;  4O62 A;  2E61 A;  2M1R A;  1WEW A;  1WEQ A;  2VNF A;  4PTB A;  2RR4 A;  1U6G B;  2ECJ A;  3ZNI A;  2EXU A;  3O47 A;  3ASL A;  3PUQ A;  2Y1M A;  5FEY A;  3EB5 A;  3ZVZ B;  2K16 A;  2KR4 A;  2M3H A;  5DKA A;  4I7B A;  3M63 A;  4YAX A;  3QZV A;  2KKY A;  4IC2 A;  2BAY A;  5TDR A;  5H1T A;  3T7L A;  5B75 A;  4A49 A;  5D1M B;  2FSA A;  2MA5 A;  2XEU A;  2KRE A;  2NAA A;  4X3G A;  5SVX A;  4QF2 A;  3SOU A;  2L5U A;  4TKP B;  3KV5 A;  1XWH A;  4LKA A;  2XOZ A;  5LKU A;  2YW8 A;  3HCT A;  2VPG A;  2CRR A;  2K4D A;  1LDJ B;  5LKX A;  2MT5 A;  2F6J A;  3O34 A;  3O70 A;  3N9L A;  5TRB A;  3HCU A;  1DVP A;  2IDA A;  2L80 A;  4V3K C;  4N4F A;  1HYJ A;  2EA6 A;  2VJE A;  1JM7 A;  2VJF B;  3FL2 A;  5B79 A;  2C2V S;  2M85 A;  2FUI A;  2VPB A;  1RMD A;  4MVT A;  3FAO A;  2Y43 A;  2HYE D;  1G25 A;  4CCG X;  3KV6 A;  4S3O B;  2LAU A;  2E6R A;  3O35 A;  2YSM A;  2YT5 A;  3MDB C;  3SOX A;  4S3O C;  2XP0 A;  5EYA F;  2ECG A;  4GB0 A;  5FB0 A;  3JUE A;  4IC3 A;  4Q6F A;  2JRJ A;  4YBS A;  3GL6 A;  5B8D A;  4I7D A;  1BOR A;  4V3L C;  5KH3 A;  1WES A;  3N9M A;  4AYC B;  4QQ4 A;  4LK9 A;  2MKE A;  3I2D A;  3M7K A;  4LLB A;  4Z0O A;  3T9K A;  3M62 A;  3U5M A;  4PPE A;  3O36 A;  5LKT A;  4WZ3 B;  4GNG A;  4UP5 A;  4N3W A; 
#chains in the Genus database with same CATH homology
 2L7P A;  3DDT A;  2JUN A;  2XOC A;  2RR4 A;  4Z0R A;  2YRE A;  3E2D A;  3KDE C;  3FM8 C;  3FJU B;  2EXU A;  1DCQ A;  2CRW A;  2LAU A;  2OWA A;  3LJU X;  2DJA A;  3O47 A;  5SVY A;  3LDY A;  5SVX A;  2XOY A;  2CON A;  2YVR A;  2FD4 A;  5K3Q A;  4QQ4 A;  2P57 A;  2EGM A;  3LVQ E;  2JM3 A;  2KKX A;  2MKE A;  3MDB C;  3M7K A;  2XOZ A;  4OGC A;  4F1P A;  2XP0 A;  4Z0O A;  3T9K A;  2D8U A;  2FFW A;  4H9D A;  5SVI B;  2B0O E;  2IQJ A;  2CRR A;  2KKY A;  2CSV A;  3H7H A;  3SUB A;  3Q1D A;  4O62 A;  3JUE A;  2E61 A;  4OGE A;  3PLW A;  5SVI A;  3FEH A;  2M13 A;  3LVR E;  3DWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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