2P57A

Gap domain of znf289, an id1-regulated zinc finger protein
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
124
structure length
124
Chain Sequence
EPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GTPase-activating protein ZNF289
publication title GAP domain of ZNF289, an ID1-regulated zinc finger protein
rcsb
source organism Homo sapiens
molecule tags Metal binding protein
total genus 43
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2007-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2p57A00
3T9KA 3FM8C 3DWDA 3SUBA 2B0OE 2CRRA 2OWAA 3JUEA 3LVQE 2CRWA 2IQJA 4F1PA 3FEHA 3LJUX 3O47A 2P57A 3LVRE 3MDBC 1DCQA
chains in the Genus database with same CATH superfamily
2YT5A 4WA6A 2OXQC 2AN6A 1WGMA 4P5OB 3O34A 4AVXA 1BORA 5B78A 5SVIA 2KGGA 3RPGB 2KWOA 4WZ2A 4TKPB 2L80A 3FAOA 4V3KC 4YADA 2DJAA 2LGLA 2YYRA 4W4UA 3LQJA 4PPEA 2MUMA 3H7HA 2PUYA 4AYCA 4BBQA 5B79A 3DDTA 4GNDA 2XB1A 5TDWA 5D1MB 2JMDA 2G6QA 1K2FA 2CKLA 2KGIA 5C11A 2EA6A 4I7CA 3Q1DA 2L5UA 5H1TA 5TBNA 3O70A 4A49A 3ZPV1 3ZVZB 2MKEA 2ECWA 2LGGA 2YVRA 4CA1A 4S3OB 2VJFA 4LADB 2LXPC 5JG6A 3ZTGA 4N3WA 4OGEA 2KWNA 3KDEC 4FO9A 2YQMA 2UZGA 4QF2A 1DCQA 3O7AA 2L43A 2KKXA 4L58A 4GNEA 4AYCB 3SUBA 1X4UA 5DINA 4GNGA 2M1RA 5TDRA 2CRRA 5KH9A 5SVXA 3HTKC 3FL2A 1WEWA 3N9QA 3MHHA 2ECIA 3FEHA 3I2DA 2JMIA 2VPDA 4YABA 2D8SA 2EXUA 2M13A 4X3GA 3MDBC 5D1LB 2KFTA 2XOZA 4R2YA 4Q6FA 3V43A 4FJCA 3N9LA 4A4CA 3O36A 2VNFA 4LLBA 2LAUA 4O64A 4AUQB 2CRWA 1RMDA 1DVPA 2PNXA 2DX8A 4CCGX 1X4IA 5D1KB 3GV4A 4ZDTA 3PURA 1Z2QA 1FBVA 4L7XA 3HCTA 3LDYA 2JUNA 1JM7A 4S3OC 5LKTA 1CHCA 3KV6A 2MA5A 2YUCA 3DQVR 1HYIA 3L1ZB 4F1PA 2VJEB 3N9MA 4R8PK 4XI1A 3SHBA 4LKAA 2C2VS 2MD7B 4I7BA 4UP5A 3O35A 1G25A 3HCSA 5FERA 2MT5A 2XP0A 2MD8C 3N9NA 2JMJA 2LRIC 3SOXA 1WEEA 4N4FA 5G05B 2FUUA 3ZYQA 4UP0A 1JOCA 3O37A 3ZVYA 4WZ3B 3C5KA 4BHWA 3PUQA 1LDJB 3FM8C 3SOUA 3NG2A 5H1VA 3M99A 4IC3A 3LRQA 1LDKC 4H9DA 2ZETC 5B76A 5KH7A 4LJNA 2HDPA 2L0BA 4FK5A 3U5MA 1T1HA 5SVIB 3DPLR 4QF3A 1VYXA 2LXHC 2YW8A 2ECTA 2CT2A 2CSVA 2C2LA 2F6JA 4V3LC 2MIQA 1WEQA 2KE1A 2YREA 5B8DA 5FB1A 2YQLA 3HCUA 5H1UA 1WENA 4A4BA 2Y43A 4QQ4A 3U5OA 2L75A 3ZPVE 5AIUA 5I3LA 2CKLB 2K17A 1WFKA 2ECJA 4AP4A 3ZNIA 5LCWB 2RR4A 2F6NA 2BAYA 2KWJA 3ASLA 4Z0RA 2VPGA 3T9KA 3E2DA 3RTRB 2FD4A 5B77A 2H0DA 3T6RA 2OWAA 3LQHA 4F52B 4YC9A 2YHNA 5J3XA 2FSAA 2QIZA 4GB0A 3QZVA 2VJFB 1Z6UA 2MA6A 2XOYA 3M63A 2KREA 1Z60A 2F42A 2VPBA 4R7EA 1VFYA 2YHOA 3L1XA 3LQIA 5G0FA 1IYMA 1V87A 4WZ0A 3EB5A 1WE9A 4MSXA 1WEVA 2M3HA 2E6RA 3M62A 2I50A 3O47A 3SOWA 3KV5A 3EB6A 4GNFA 2YSJA 5H9MA 2KWKA 4C9ZA 1N87A 1MM2A 5K3QA 3N9PA 2H0DB 1WEUA 1X4JA 2K4DA 5G04B 2LQ6A 4ZUXU 4MVTA 3O33A 2JM3A 1WILA 3GL6A 2LGKA 2M6MA 1WEPA 3PLWA 2KIZA 1E4UA 2FUIA 4O62A 2XOCA 2MNZA 4LK9A 1JM7B 1VD4A 2KYUA 4NN2A 4YAXA 5TABA 5KH3A 2KU3A 1WEMA 2YSMA 3VK6A 2CSYA 2LDRA 5LKXA 3U5PA 4B86C 4YATA 2ECVA 3LJUX 2RSDA 2FFWA 1MM3A 2HYED 2K16A 2VP7A 4B7YC 4OGCA 2K1JA 1WEOA 4UI9B 3U5NA 2XEUA 2ECNA 5FB0A 4Z0OA 2YURA 5B75A 1XWHA 3M7KA 3JUEA 4I7DA 5C13A 2E61A 4A0CD 3L11A 2CSZA 2LN0A 2VPEA 2L7PA 4YBSA 2P57A 4FIPA 3FJUB 1ZBDB 5LKZA 1WIMA 2LGVA 2Y1MA 2RI7A 5FEYA 1WESA 2D8UA 1MBMA 5EYAF 3LVQE 3RPGC 2QICA 2VJEA 2M85A 2E6SA 4YBTA 5TRBA 3FANA 4IC2A 2LV9A 2KR4A 2JRJA 3KQIA 2G43A 3LVRE 4YBMA 2EGPA 3N9OA 2CONA 5LKUA 2NAAA 1FP0A 5AITA 3DWDA 4PTBA 3C6WA 5DKAA 2B0OE 3T7LA 2MNYA 1HYJA 1F62A 2Y1NA 2DSMA 2G45A 2QJ0A 2IDAA 3IHPA 2IQJA 2ECGA 2YU4A 5SVYA 3KNVA 3MHSA 2EODA 3PHDA 4ZQLA 1U6GB 2EGMA 2KKYA
chains in the Genus database with same CATH topology
2CONA 4OGCA 4Z0RA 2CSVA 3FJUB 2KKXA 2XOZA 2MKEA 3H7HA 3FM8C 3T9KA 2JUNA 2XP0A 3LDYA 3DWDA 2YREA 3DDTA 3E2DA 4Z0OA 5K3QA 3SUBA 2D8UA 2FD4A 2B0OE 3M7KA 1DCQA 2CRRA 2LAUA 2YVRA 4H9DA 2OWAA 3JUEA 3LVQE 3MDBC 5SVXA 2CRWA 2IQJA 4F1PA 2E61A 2JM3A 4QQ4A 5SVIA 3FEHA 5SVYA 5SVIB 3LJUX 2XOYA 3PLWA 4OGEA 2L7PA 3KDEC 3O47A 2FFWA 2RR4A 2EXUA 2DJAA 2M13A 3Q1DA 2P57A 3LVRE 2EGMA 2KKYA 4O62A 2XOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T9K A;  3FM8 C;  3DWD A;  3SUB A;  2B0O E;  2CRR A;  2OWA A;  3JUE A;  3LVQ E;  2CRW A;  2IQJ A;  4F1P A;  3FEH A;  3LJU X;  3O47 A;  2P57 A;  3LVR E;  3MDB C;  1DCQ A; 
#chains in the Genus database with same CATH topology
 2YT5 A;  4WA6 A;  2OXQ C;  2AN6 A;  1WGM A;  4P5O B;  3O34 A;  4AVX A;  1BOR A;  5B78 A;  5SVI A;  2KGG A;  3RPG B;  2KWO A;  4WZ2 A;  4TKP B;  2L80 A;  3FAO A;  4V3K C;  4YAD A;  2DJA A;  2LGL A;  2YYR A;  4W4U A;  3LQJ A;  4PPE A;  2MUM A;  3H7H A;  2PUY A;  4AYC A;  4BBQ A;  5B79 A;  3DDT A;  4GND A;  2XB1 A;  5TDW A;  5D1M B;  2JMD A;  2G6Q A;  1K2F A;  2CKL A;  2KGI A;  5C11 A;  2EA6 A;  4I7C A;  3Q1D A;  2L5U A;  5H1T A;  5TBN A;  3O70 A;  4A49 A;  3ZPV 1;  3ZVZ B;  2MKE A;  2ECW A;  2LGG A;  2YVR A;  4CA1 A;  4S3O B;  2VJF A;  4LAD B;  2LXP C;  5JG6 A;  3ZTG A;  4N3W A;  4OGE A;  2KWN A;  3KDE C;  4FO9 A;  2YQM A;  2UZG A;  4QF2 A;  1DCQ A;  3O7A A;  2L43 A;  2KKX A;  4L58 A;  4GNE A;  4AYC B;  3SUB A;  1X4U A;  5DIN A;  4GNG A;  2M1R A;  5TDR A;  2CRR A;  5KH9 A;  5SVX A;  3HTK C;  3FL2 A;  1WEW A;  3N9Q A;  3MHH A;  2ECI A;  3FEH A;  3I2D A;  2JMI A;  2VPD A;  4YAB A;  2D8S A;  2EXU A;  2M13 A;  4X3G A;  3MDB C;  5D1L B;  2KFT A;  2XOZ A;  4R2Y A;  4Q6F A;  3V43 A;  4FJC A;  3N9L A;  4A4C A;  3O36 A;  2VNF A;  4LLB A;  2LAU A;  4O64 A;  4AUQ B;  2CRW A;  1RMD A;  1DVP A;  2PNX A;  2DX8 A;  4CCG X;  1X4I A;  5D1K B;  3GV4 A;  4ZDT A;  3PUR A;  1Z2Q A;  1FBV A;  4L7X A;  3HCT A;  3LDY A;  2JUN A;  1JM7 A;  4S3O C;  5LKT A;  1CHC A;  3KV6 A;  2MA5 A;  2YUC A;  3DQV R;  1HYI A;  3L1Z B;  4F1P A;  2VJE B;  3N9M A;  4R8P K;  4XI1 A;  3SHB A;  4LKA A;  2C2V S;  2MD7 B;  4I7B A;  4UP5 A;  3O35 A;  1G25 A;  3HCS A;  5FER A;  2MT5 A;  2XP0 A;  2MD8 C;  3N9N A;  2JMJ A;  2LRI C;  3SOX A;  1WEE A;  4N4F A;  5G05 B;  2FUU A;  3ZYQ A;  4UP0 A;  1JOC A;  3O37 A;  3ZVY A;  4WZ3 B;  3C5K A;  4BHW A;  3PUQ A;  1LDJ B;  3FM8 C;  3SOU A;  3NG2 A;  5H1V A;  3M99 A;  4IC3 A;  3LRQ A;  1LDK C;  4H9D A;  2ZET C;  5B76 A;  5KH7 A;  4LJN A;  2HDP A;  2L0B A;  4FK5 A;  3U5M A;  1T1H A;  5SVI B;  3DPL R;  4QF3 A;  1VYX A;  2LXH C;  2YW8 A;  2ECT A;  2CT2 A;  2CSV A;  2C2L A;  2F6J A;  4V3L C;  2MIQ A;  1WEQ A;  2KE1 A;  2YRE A;  5B8D A;  5FB1 A;  2YQL A;  3HCU A;  5H1U A;  1WEN A;  4A4B A;  2Y43 A;  4QQ4 A;  3U5O A;  2L75 A;  3ZPV E;  5AIU A;  5I3L A;  2CKL B;  2K17 A;  1WFK A;  2ECJ A;  4AP4 A;  3ZNI A;  5LCW B;  2RR4 A;  2F6N A;  2BAY A;  2KWJ A;  3ASL A;  4Z0R A;  2VPG A;  3T9K A;  3E2D A;  3RTR B;  2FD4 A;  5B77 A;  2H0D A;  3T6R A;  2OWA A;  3LQH A;  4F52 B;  4YC9 A;  2YHN A;  5J3X A;  2FSA A;  2QIZ A;  4GB0 A;  3QZV A;  2VJF B;  1Z6U A;  2MA6 A;  2XOY A;  3M63 A;  2KRE A;  1Z60 A;  2F42 A;  2VPB A;  4R7E A;  1VFY A;  2YHO A;  3L1X A;  3LQI A;  5G0F A;  1IYM A;  1V87 A;  4WZ0 A;  3EB5 A;  1WE9 A;  4MSX A;  1WEV A;  2M3H A;  2E6R A;  3M62 A;  2I50 A;  3O47 A;  3SOW A;  3KV5 A;  3EB6 A;  4GNF A;  2YSJ A;  5H9M A;  2KWK A;  4C9Z A;  1N87 A;  1MM2 A;  5K3Q A;  3N9P A;  2H0D B;  1WEU A;  1X4J A;  2K4D A;  5G04 B;  2LQ6 A;  4ZUX U;  4MVT A;  3O33 A;  2JM3 A;  1WIL A;  3GL6 A;  2LGK A;  2M6M A;  1WEP A;  3PLW A;  2KIZ A;  1E4U A;  2FUI A;  4O62 A;  2XOC A;  2MNZ A;  4LK9 A;  1JM7 B;  1VD4 A;  2KYU A;  4NN2 A;  4YAX A;  5TAB A;  5KH3 A;  2KU3 A;  1WEM A;  2YSM A;  3VK6 A;  2CSY A;  2LDR A;  5LKX A;  3U5P A;  4B86 C;  4YAT A;  2ECV A;  3LJU X;  2RSD A;  2FFW A;  1MM3 A;  2HYE D;  2K16 A;  2VP7 A;  4B7Y C;  4OGC A;  2K1J A;  1WEO A;  4UI9 B;  3U5N A;  2XEU A;  2ECN A;  5FB0 A;  4Z0O A;  2YUR A;  5B75 A;  1XWH A;  3M7K A;  3JUE A;  4I7D A;  5C13 A;  2E61 A;  4A0C D;  3L11 A;  2CSZ A;  2LN0 A;  2VPE A;  2L7P A;  4YBS A;  2P57 A;  4FIP A;  3FJU B;  1ZBD B;  5LKZ A;  1WIM A;  2LGV A;  2Y1M A;  2RI7 A;  5FEY A;  1WES A;  2D8U A;  1MBM A;  5EYA F;  3LVQ E;  3RPG C;  2QIC A;  2VJE A;  2M85 A;  2E6S A;  4YBT A;  5TRB A;  3FAN A;  4IC2 A;  2LV9 A;  2KR4 A;  2JRJ A;  3KQI A;  2G43 A;  3LVR E;  4YBM A;  2EGP A;  3N9O A;  2CON A;  5LKU A;  2NAA A;  1FP0 A;  5AIT A;  3DWD A;  4PTB A;  3C6W A;  5DKA A;  2B0O E;  3T7L A;  2MNY A;  1HYJ A;  1F62 A;  2Y1N A;  2DSM A;  2G45 A;  2QJ0 A;  2IDA A;  3IHP A;  2IQJ A;  2ECG A;  2YU4 A;  5SVY A;  3KNV A;  3MHS A;  2EOD A;  3PHD A;  4ZQL A;  1U6G B;  2EGM A;  2KKY A; 
#chains in the Genus database with same CATH homology
 2CON A;  4OGC A;  4Z0R A;  2CSV A;  3FJU B;  2KKX A;  2XOZ A;  2MKE A;  3H7H A;  3FM8 C;  3T9K A;  2JUN A;  2XP0 A;  3LDY A;  3DWD A;  2YRE A;  3DDT A;  3E2D A;  4Z0O A;  5K3Q A;  3SUB A;  2D8U A;  2FD4 A;  2B0O E;  3M7K A;  1DCQ A;  2CRR A;  2LAU A;  2YVR A;  4H9D A;  2OWA A;  3JUE A;  3LVQ E;  3MDB C;  5SVX A;  2CRW A;  2IQJ A;  4F1P A;  2E61 A;  2JM3 A;  4QQ4 A;  5SVI A;  3FEH A;  5SVY A;  5SVI B;  3LJU X;  2XOY A;  3PLW A;  4OGE A;  2L7P A;  3KDE C;  3O47 A;  2FFW A;  2RR4 A;  2EXU A;  2DJA A;  2M13 A;  3Q1D A;  2P57 A;  3LVR E;  2EGM A;  2KKY A;  4O62 A;  2XOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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