2CSVA

Solution structure of the zf-b_box type2 domain of human tripartite motif protein trim29 isoform alpha
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
b'GSSGSSGQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGPSSG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the zf-B_box type2 domain of human tripartite motif protein TRIM29 isoform alpha
rcsb
molecule keywords Tripartite motif protein 29
source organism Homo sapiens
molecule tags Signaling protein
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2csvA00
2CSVA 2EGMA 2DJAA 2JUNA 3Q1DA 2YVRA 2D8UA 5K3QA 3DDTA
chains in the Genus database with same CATH superfamily
2YREA 3SOUA 1Z60A 4GNDA 1X4UA 5H1TA 2XOCA 2VNFA 3M99A 3ZVZB 3N9QA 3PUQA 2VPDA 3SOXA 3FAOA 4R7EA 2JUNA 4L7XA 1LDJB 3HTKC 3IHPA 3LQJA 1MBMA 3I2DA 2CSYA 5TRBA 4R8PK 4ZQLA 4LLBA 3DPLR 4WZ3B 2XOYA 2LQ6A 4S3OC 1JM7B 1E4UA 2YYRA 1JOCA 4V3KC 1RMDA 3T6RA 2L75A 3MDBC 4F52B 3C5KA 4AVXA 2L7PA 3HCUA 4IC2A 4ZUXU 5LKZA 2IQJA 4V3LC 5D1LB 2ECNA 4QQ4A 4YATA 2KWOA 3O47A 4A0CD 3LQIA 2KKYA 4WZ0A 5TDRA 4WZ2A 5SVYA 4LADB 5AIUA 4YADA 4S3OB 3KNVA 3ZNIA 2XB1A 3DQVR 1X4JA 2KU3A 1V87A 3FANA 1WEMA 3MHSA 1DCQA 3LJUX 2JMIA 2MD7B 2KFTA 5B79A 5H1UA 5DKAA 3LVRE 2KWNA 2VJFB 2DX8A 2YT5A 1WFKA 3N9OA 1WEQA 4Z0OA 2ECIA 1WEVA 2RI7A 3L1XA 5LKXA 2AN6A 2F6JA 2F6NA 1T1HA 4GNEA 3RPGC 3ZTGA 5LKTA 1WGMA 2PNXA 2LXPC 2E61A 2XP0A 5I3LA 2KE1A 2MIQA 4ZDTA 5JG6A 2YVRA 5TBNA 1HYIA 2K4DA 2BAYA 2IDAA 3SHBA 5K3QA 2YW8A 3PURA 5G05B 4GNGA 2LGGA 3N9PA 2EA6A 4PTBA 2ECGA 3ZPV1 4CA1A 2EODA 5FB1A 3DWDA 1MM3A 2I50A 5B75A 3EB6A 1WILA 2LXHC 1WEOA 2RSDA 5LCWB 2LV9A 5DINA 2FUUA 2LGVA 3FEHA 3O70A 3C6WA 2D8UA 2M6MA 2MNYA 5LKUA 4QF2A 3U5OA 2UZGA 2Y43A 4A4BA 1DVPA 4QF3A 2FUIA 3LVQE 5KH9A 1BORA 2FFWA 4OGEA 5D1MB 4I7CA 4F1PA 2YHOA 3SOWA 2HDPA 5SVXA 4LK9A 5TABA 2KREA 1FBVA 2LGKA 1WEPA 2KKXA 2VPBA 3VK6A 5B77A 2M85A 4H9DA 2G6QA 3E2DA 5KH7A 4FO9A 3U5NA 3M7KA 2YU4A 3JUEA 2MA6A 2G43A 4W4UA 2FD4A 2JRJA 2XOZA 3M63A 2L5UA 2L80A 2P57A 4WA6A 5FERA 2C2VS 4B7YC 2ZETC 4TKPB 2FSAA 3O34A 2DJAA 2CT2A 5KH3A 2M13A 3FM8C 3O37A 4LJNA 5B8DA 2JMDA 3LQHA 5AITA 5C11A 3PHDA 3H7HA 2CRRA 3LDYA 1K2FA 2Y1NA 4MSXA 2JM3A 1N87A 5C13A 2VJEA 3HCSA 2HYED 4P5OB 2H0DA 2KWKA 2OXQC 3LRQA 2LDRA 3L1ZB 2MD8C 1WEWA 4AP4A 2QICA 4FK5A 4O62A 2YSJA 2CRWA 3KV6A 2K17A 2K1JA 3KV5A 1VD4A 4Z0RA 4BHWA 2E6SA 2XEUA 1VFYA 1U6GB 5D1KB 3EB5A 4UI9B 2B0OE 5FEYA 5B76A 5EYAF 3ZYQA 3O7AA 4N4FA 5SVIA 4LKAA 1Z6UA 2EXUA 2Y1MA 4AYCA 1LDKC 2CSVA 1FP0A 2KYUA 2M3HA 3FL2A 2EGPA 1IYMA 3MHHA 5H9MA 4YAXA 3N9MA 4Q6FA 1WESA 2LN0A 4BBQA 1Z2QA 4N3WA 3GV4A 4GB0A 3HCTA 4B86C 4YBTA 2ECVA 2LAUA 2VP7A 2L43A 2C2LA 3M62A 4AUQB 3FJUB 2YURA 4IC3A 2CKLA 5G04B 5J3XA 1ZBDB 3QZVA 2EGMA 4GNFA 1X4IA 3ZVYA 2ECJA 4XI1A 1G25A 2KGGA 2QJ0A 2D8SA 5B78A 3GL6A 2CKLB 3KDEC 3NG2A 1HYJA 4R2YA 2MT5A 4CCGX 2YUCA 3T9KA 3O33A 4MVTA 4PPEA 3ASLA 4FIPA 4L58A 1WENA 2MKEA 4YBMA 2MNZA 1JM7A 3SUBA 4YC9A 2VPEA 5G0FA 1XWHA 4UP5A 2YHNA 3O35A 4YABA 5FB0A 2VJEB 3U5MA 2H0DB 3T7LA 2DSMA 3KQIA 2KIZA 2E6RA 3RTRB 1CHCA 1WE9A 3L11A 4C9ZA 4OGCA 1MM2A 3DDTA 2LGLA 4A4CA 2LRIC 3U5PA 2G45A 2M1RA 1VYXA 2NAAA 4I7DA 2KR4A 4FJCA 2VJFA 2CSZA 2MA5A 1WEUA 3N9NA 5SVIB 2CONA 3PLWA 4I7BA 4UP0A 5H1VA 4AYCB 2OWAA 2YQLA 2MUMA 2ECWA 2ECTA 2VPGA 2F42A 3N9LA 4A49A 2YSMA 4X3GA 2RR4A 4YBSA 2KWJA 2K16A 1WIMA 4O64A 2QIZA 2L0BA 5TDWA 3V43A 1F62A 2PUYA 4NN2A 3Q1DA 3RPGB 2YQMA 2KGIA 3O36A 3ZPVE 2JMJA 1WEEA
chains in the Genus database with same CATH topology
2YREA 2E61A 2XP0A 2B0OE 4QQ4A 2P57A 3O47A 3FEHA 2YVRA 2XOCA 2D8UA 3T9KA 2KKXA 2KKYA 5K3QA 4Z0OA 2XOYA 2DJAA 2EGMA 4H9DA 5SVYA 3E2DA 5SVIB 2CONA 2M13A 3PLWA 2MKEA 5SVIA 3FM8C 3SUBA 4O62A 2JUNA 2LAUA 3M7KA 2CRWA 2OWAA 3Q1DA 3H7HA 3JUEA 2EXUA 3MDBC 4OGCA 2CRRA 3LVQE 4Z0RA 3DWDA 3DDTA 2FFWA 2CSVA 2L7PA 4OGEA 1DCQA 3LJUX 3LDYA 2FD4A 4F1PA 3LVRE 2XOZA 3KDEC 3FJUB 2IQJA 2RR4A 2JM3A 5SVXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CSV A;  2EGM A;  2DJA A;  2JUN A;  3Q1D A;  2YVR A;  2D8U A;  5K3Q A;  3DDT A; 
#chains in the Genus database with same CATH topology
 2YRE A;  3SOU A;  1Z60 A;  4GND A;  1X4U A;  5H1T A;  2XOC A;  2VNF A;  3M99 A;  3ZVZ B;  3N9Q A;  3PUQ A;  2VPD A;  3SOX A;  3FAO A;  4R7E A;  2JUN A;  4L7X A;  1LDJ B;  3HTK C;  3IHP A;  3LQJ A;  1MBM A;  3I2D A;  2CSY A;  5TRB A;  4R8P K;  4ZQL A;  4LLB A;  3DPL R;  4WZ3 B;  2XOY A;  2LQ6 A;  4S3O C;  1JM7 B;  1E4U A;  2YYR A;  1JOC A;  4V3K C;  1RMD A;  3T6R A;  2L75 A;  3MDB C;  4F52 B;  3C5K A;  4AVX A;  2L7P A;  3HCU A;  4IC2 A;  4ZUX U;  5LKZ A;  2IQJ A;  4V3L C;  5D1L B;  2ECN A;  4QQ4 A;  4YAT A;  2KWO A;  3O47 A;  4A0C D;  3LQI A;  2KKY A;  4WZ0 A;  5TDR A;  4WZ2 A;  5SVY A;  4LAD B;  5AIU A;  4YAD A;  4S3O B;  3KNV A;  3ZNI A;  2XB1 A;  3DQV R;  1X4J A;  2KU3 A;  1V87 A;  3FAN A;  1WEM A;  3MHS A;  1DCQ A;  3LJU X;  2JMI A;  2MD7 B;  2KFT A;  5B79 A;  5H1U A;  5DKA A;  3LVR E;  2KWN A;  2VJF B;  2DX8 A;  2YT5 A;  1WFK A;  3N9O A;  1WEQ A;  4Z0O A;  2ECI A;  1WEV A;  2RI7 A;  3L1X A;  5LKX A;  2AN6 A;  2F6J A;  2F6N A;  1T1H A;  4GNE A;  3RPG C;  3ZTG A;  5LKT A;  1WGM A;  2PNX A;  2LXP C;  2E61 A;  2XP0 A;  5I3L A;  2KE1 A;  2MIQ A;  4ZDT A;  5JG6 A;  2YVR A;  5TBN A;  1HYI A;  2K4D A;  2BAY A;  2IDA A;  3SHB A;  5K3Q A;  2YW8 A;  3PUR A;  5G05 B;  4GNG A;  2LGG A;  3N9P A;  2EA6 A;  4PTB A;  2ECG A;  3ZPV 1;  4CA1 A;  2EOD A;  5FB1 A;  3DWD A;  1MM3 A;  2I50 A;  5B75 A;  3EB6 A;  1WIL A;  2LXH C;  1WEO A;  2RSD A;  5LCW B;  2LV9 A;  5DIN A;  2FUU A;  2LGV A;  3FEH A;  3O70 A;  3C6W A;  2D8U A;  2M6M A;  2MNY A;  5LKU A;  4QF2 A;  3U5O A;  2UZG A;  2Y43 A;  4A4B A;  1DVP A;  4QF3 A;  2FUI A;  3LVQ E;  5KH9 A;  1BOR A;  2FFW A;  4OGE A;  5D1M B;  4I7C A;  4F1P A;  2YHO A;  3SOW A;  2HDP A;  5SVX A;  4LK9 A;  5TAB A;  2KRE A;  1FBV A;  2LGK A;  1WEP A;  2KKX A;  2VPB A;  3VK6 A;  5B77 A;  2M85 A;  4H9D A;  2G6Q A;  3E2D A;  5KH7 A;  4FO9 A;  3U5N A;  3M7K A;  2YU4 A;  3JUE A;  2MA6 A;  2G43 A;  4W4U A;  2FD4 A;  2JRJ A;  2XOZ A;  3M63 A;  2L5U A;  2L80 A;  2P57 A;  4WA6 A;  5FER A;  2C2V S;  4B7Y C;  2ZET C;  4TKP B;  2FSA A;  3O34 A;  2DJA A;  2CT2 A;  5KH3 A;  2M13 A;  3FM8 C;  3O37 A;  4LJN A;  5B8D A;  2JMD A;  3LQH A;  5AIT A;  5C11 A;  3PHD A;  3H7H A;  2CRR A;  3LDY A;  1K2F A;  2Y1N A;  4MSX A;  2JM3 A;  1N87 A;  5C13 A;  2VJE A;  3HCS A;  2HYE D;  4P5O B;  2H0D A;  2KWK A;  2OXQ C;  3LRQ A;  2LDR A;  3L1Z B;  2MD8 C;  1WEW A;  4AP4 A;  2QIC A;  4FK5 A;  4O62 A;  2YSJ A;  2CRW A;  3KV6 A;  2K17 A;  2K1J A;  3KV5 A;  1VD4 A;  4Z0R A;  4BHW A;  2E6S A;  2XEU A;  1VFY A;  1U6G B;  5D1K B;  3EB5 A;  4UI9 B;  2B0O E;  5FEY A;  5B76 A;  5EYA F;  3ZYQ A;  3O7A A;  4N4F A;  5SVI A;  4LKA A;  1Z6U A;  2EXU A;  2Y1M A;  4AYC A;  1LDK C;  2CSV A;  1FP0 A;  2KYU A;  2M3H A;  3FL2 A;  2EGP A;  1IYM A;  3MHH A;  5H9M A;  4YAX A;  3N9M A;  4Q6F A;  1WES A;  2LN0 A;  4BBQ A;  1Z2Q A;  4N3W A;  3GV4 A;  4GB0 A;  3HCT A;  4B86 C;  4YBT A;  2ECV A;  2LAU A;  2VP7 A;  2L43 A;  2C2L A;  3M62 A;  4AUQ B;  3FJU B;  2YUR A;  4IC3 A;  2CKL A;  5G04 B;  5J3X A;  1ZBD B;  3QZV A;  2EGM A;  4GNF A;  1X4I A;  3ZVY A;  2ECJ A;  4XI1 A;  1G25 A;  2KGG A;  2QJ0 A;  2D8S A;  5B78 A;  3GL6 A;  2CKL B;  3KDE C;  3NG2 A;  1HYJ A;  4R2Y A;  2MT5 A;  4CCG X;  2YUC A;  3T9K A;  3O33 A;  4MVT A;  4PPE A;  3ASL A;  4FIP A;  4L58 A;  1WEN A;  2MKE A;  4YBM A;  2MNZ A;  1JM7 A;  3SUB A;  4YC9 A;  2VPE A;  5G0F A;  1XWH A;  4UP5 A;  2YHN A;  3O35 A;  4YAB A;  5FB0 A;  2VJE B;  3U5M A;  2H0D B;  3T7L A;  2DSM A;  3KQI A;  2KIZ A;  2E6R A;  3RTR B;  1CHC A;  1WE9 A;  3L11 A;  4C9Z A;  4OGC A;  1MM2 A;  3DDT A;  2LGL A;  4A4C A;  2LRI C;  3U5P A;  2G45 A;  2M1R A;  1VYX A;  2NAA A;  4I7D A;  2KR4 A;  4FJC A;  2VJF A;  2CSZ A;  2MA5 A;  1WEU A;  3N9N A;  5SVI B;  2CON A;  3PLW A;  4I7B A;  4UP0 A;  5H1V A;  4AYC B;  2OWA A;  2YQL A;  2MUM A;  2ECW A;  2ECT A;  2VPG A;  2F42 A;  3N9L A;  4A49 A;  2YSM A;  4X3G A;  2RR4 A;  4YBS A;  2KWJ A;  2K16 A;  1WIM A;  4O64 A;  2QIZ A;  2L0B A;  5TDW A;  3V43 A;  1F62 A;  2PUY A;  4NN2 A;  3Q1D A;  3RPG B;  2YQM A;  2KGI A;  3O36 A;  3ZPV E;  2JMJ A;  1WEE A; 
#chains in the Genus database with same CATH homology
 2YRE A;  2E61 A;  2XP0 A;  2B0O E;  4QQ4 A;  2P57 A;  3O47 A;  3FEH A;  2YVR A;  2XOC A;  2D8U A;  3T9K A;  2KKX A;  2KKY A;  5K3Q A;  4Z0O A;  2XOY A;  2DJA A;  2EGM A;  4H9D A;  5SVY A;  3E2D A;  5SVI B;  2CON A;  2M13 A;  3PLW A;  2MKE A;  5SVI A;  3FM8 C;  3SUB A;  4O62 A;  2JUN A;  2LAU A;  3M7K A;  2CRW A;  2OWA A;  3Q1D A;  3H7H A;  3JUE A;  2EXU A;  3MDB C;  4OGC A;  2CRR A;  3LVQ E;  4Z0R A;  3DWD A;  3DDT A;  2FFW A;  2CSV A;  2L7P A;  4OGE A;  1DCQ A;  3LJU X;  3LDY A;  2FD4 A;  4F1P A;  3LVR E;  2XOZ A;  3KDE C;  3FJU B;  2IQJ A;  2RR4 A;  2JM3 A;  5SVX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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