2CSVA

Solution structure of the zf-b_box type2 domain of human tripartite motif protein trim29 isoform alpha
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
GSSGSSGQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Homo sapiens
publication title Solution structure of the zf-B_box type2 domain of human tripartite motif protein TRIM29 isoform alpha
rcsb
molecule keywords Tripartite motif protein 29
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2csvA00
2CSVA 3Q1DA 2YVRA 5K3QA 2EGMA 2JUNA 2D8UA 3DDTA 2DJAA
chains in the Genus database with same CATH superfamily
1JOCA 2LXPC 3M63A 3EB6A 5TRBA 1X4IA 5LCWB 4YABA 2DX8A 3O36A 2I50A 3M99A 2KYUA 4MVTA 1XWHA 2MA6A 3L11A 4OGCA 2F6NA 3U5PA 2G45A 2YT5A 3PHDA 5I3LA 1FBVA 2EA6A 5FB1A 3DWDA 5KH3A 1LDKC 4F52B 2CKLA 4W4UA 3ZVZB 2JMJA 1VFYA 4MSXA 2KWJA 3FANA 3DDTA 1WIMA 3U5OA 2KE1A 4BHWA 3PUQA 2YUCA 2EGMA 2D8SA 1E4UA 5D1MB 2KREA 2IDAA 4YADA 2EXUA 4Q6FA 1WESA 4Z0RA 2YVRA 1VYXA 5B79A 2FUIA 4IC2A 2LGGA 5H1UA 2Y1NA 5G05B 2KGGA 2XOYA 5B76A 2B0OE 3U5NA 2LRIC 2NAAA 3C5KA 4YBMA 2G6QA 1WFKA 3HCTA 2ECNA 2LQ6A 5SVYA 4QF2A 2D8UA 3MHHA 4LK9A 2CRWA 4PTBA 2QIZA 3FM8C 3ASLA 3N9QA 5FERA 3PLWA 2C2LA 3E2DA 2VJFA 4B7YC 2VJEA 2JRJA 4OGEA 5DINA 3LJUX 5TABA 2MNZA 2PNXA 2OWAA 3FJUB 1BORA 3O70A 5SVIB 2ECVA 2KWOA 1Z6UA 2KWKA 3RPGC 4LLBA 2MIQA 1WEOA 4A0CD 2L5UA 3V43A 4AP4A 4I7BA 1WGMA 2JM3A 1HYJA 1N87A 4AYCA 3PURA 5AITA 3LVRE 3KV5A 2M85A 2E6SA 5K3QA 2OXQC 5B8DA 2DJAA 2H0DA 1JM7A 4GB0A 2K17A 4C9ZA 4R2YA 2LDRA 4O62A 5TDWA 2YYRA 2VPGA 2YSMA 2CSZA 4QF3A 3FL2A 2JMDA 4WZ2A 2HYED 4FO9A 2ECIA 2K16A 3ZNIA 1WEPA 2IQJA 2MA5A 2VNFA 5KH9A 4LKAA 5SVXA 4S3OB 3M7KA 4I7CA 2LAUA 3GV4A 4R8PK 3IHPA 3NG2A 3L1ZB 2VP7A 2M3HA 2L0BA 1MBMA 2RI7A 4N4FA 4YATA 2K1JA 5D1LB 1G25A 1WEUA 2LGVA 2CKLB 3O35A 2RR4A 3FAOA 3KNVA 5H1TA 4S3OC 3C6WA 3O33A 1WEWA 4YC9A 3KDEC 3O7AA 3EB5A 5LKXA 1WE9A 2L7PA 2HDPA 2XB1A 2LGLA 3MDBC 3O47A 1CHCA 3RTRB 2MD8C 1DCQA 4YBSA 5LKTA 2M6MA 4ZUXU 3LVQE 1X4UA 3SUBA 2MT5A 3RPGB 3HCUA 2ECGA 2YHOA 4PPEA 3DQVR 2K4DA 1V87A 2E6RA 2BAYA 3LDYA 2FD4A 5D1KB 3M62A 5B78A 2ECJA 5AIUA 2VJEB 2KGIA 5C11A 4QQ4A 1WEQA 4GNGA 4WZ3B 2XOZA 3KV6A 5FB0A 4YBTA 1VD4A 2KR4A 2LGKA 2MD7B 4TKPB 3N9OA 4GNFA 3O34A 5SVIA 2AN6A 2UZGA 4I7DA 2VPEA 2JMIA 4UI9B 4O64A 3FEHA 3JUEA 5LKUA 3N9PA 5H9MA 4FIPA 1HYIA 2M13A 4ZQLA 3VK6A 4L7XA 2EGPA 2KKXA 4A4CA 2XOCA 2VPBA 1K2FA 2E61A 2F6JA 2PUYA 2KWNA 3LQIA 4B86C 1MM2A 1T1HA 3KQIA 5DKAA 2YQLA 3N9NA 2KIZA 4BBQA 2CONA 1MM3A 2MNYA 3SHBA 1RMDA 4GNDA 4LJNA 2CSVA 4F1PA 3U5MA 3L1XA 2EODA 1U6GB 2F42A 1ZBDB 2LV9A 5JG6A 5LKZA 4A49A 3Q1DA 2L80A 2C2VS 5J3XA 3LQJA 4WA6A 5H1VA 2DSMA 2G43A 5EYAF 4WZ0A 1WILA 4A4BA 3ZPVE 1WEMA 2XP0A 2YHNA 4AVXA 2YURA 2KU3A 4NN2A 4V3LC 2QJ0A 4AUQB 4X3GA 4Z0OA 4R7EA 4LADB 4XI1A 2ECTA 2P57A 2FFWA 5FEYA 1DVPA 3GL6A 3ZYQA 3LQHA 2ZETC 4CA1A 1IYMA 3N9LA 4P5OB 4GNEA 1FP0A 1LDJB 3O37A 5C13A 3HCSA 3T6RA 5B77A 1WEVA 2YSJA 1Z60A 3HTKC 2VJFB 3N9MA 4N3WA 2JUNA 2FUUA 4UP5A 3SOWA 2YQMA 4FK5A 4UP0A 4ZDTA 3LRQA 5B75A 2FSAA 4IC3A 3ZPV1 2QICA 2YW8A 3T7LA 5TDRA 1X4JA 5G0FA 2L43A 2MKEA 4AYCB 3MHSA 2XEUA 2MUMA 3I2DA 4V3KC 2ECWA 2L75A 1F62A 2CRRA 4FJCA 2YU4A 3T9KA 1Z2QA 2VPDA 3SOXA 2YREA 2H0DB 3H7HA 1JM7B 2M1RA 2Y1MA 1WENA 3ZTGA 1WEEA 2LN0A 2CT2A 3DPLR 4H9DA 5G04B 4CCGX 2LXHC 4YAXA 2Y43A 2RSDA 3QZVA 5KH7A 5TBNA 2KFTA 3SOUA 2KKYA 2CSYA 4L58A 3ZVYA
chains in the Genus database with same CATH topology
2XP0A 3MDBC 2XOYA 2CSVA 5SVIA 3O47A 2E61A 2FD4A 2B0OE 2MKEA 3LVRE 4H9DA 4F1PA 4OGEA 1DCQA 3LJUX 2RR4A 3DDTA 2OWAA 3FJUB 4Z0OA 3LVQE 5SVIB 3FEHA 5K3QA 3JUEA 2EGMA 2IQJA 2JUNA 2CRRA 2FFWA 2P57A 4QQ4A 5SVXA 3SUBA 4OGCA 2DJAA 3M7KA 2M13A 3LDYA 3KDEC 3Q1DA 2LAUA 2CONA 5SVYA 3T9KA 2XOZA 2D8UA 2CRWA 2YREA 2L7PA 2KKYA 2EXUA 3FM8C 2JM3A 3DWDA 4O62A 2KKXA 2YVRA 3H7HA 4Z0RA 3PLWA 3E2DA 2XOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CSV A;  3Q1D A;  2YVR A;  5K3Q A;  2EGM A;  2JUN A;  2D8U A;  3DDT A;  2DJA A; 
#chains in the Genus database with same CATH topology
 1JOC A;  2LXP C;  3M63 A;  3EB6 A;  5TRB A;  1X4I A;  5LCW B;  4YAB A;  2DX8 A;  3O36 A;  2I50 A;  3M99 A;  2KYU A;  4MVT A;  1XWH A;  2MA6 A;  3L11 A;  4OGC A;  2F6N A;  3U5P A;  2G45 A;  2YT5 A;  3PHD A;  5I3L A;  1FBV A;  2EA6 A;  5FB1 A;  3DWD A;  5KH3 A;  1LDK C;  4F52 B;  2CKL A;  4W4U A;  3ZVZ B;  2JMJ A;  1VFY A;  4MSX A;  2KWJ A;  3FAN A;  3DDT A;  1WIM A;  3U5O A;  2KE1 A;  4BHW A;  3PUQ A;  2YUC A;  2EGM A;  2D8S A;  1E4U A;  5D1M B;  2KRE A;  2IDA A;  4YAD A;  2EXU A;  4Q6F A;  1WES A;  4Z0R A;  2YVR A;  1VYX A;  5B79 A;  2FUI A;  4IC2 A;  2LGG A;  5H1U A;  2Y1N A;  5G05 B;  2KGG A;  2XOY A;  5B76 A;  2B0O E;  3U5N A;  2LRI C;  2NAA A;  3C5K A;  4YBM A;  2G6Q A;  1WFK A;  3HCT A;  2ECN A;  2LQ6 A;  5SVY A;  4QF2 A;  2D8U A;  3MHH A;  4LK9 A;  2CRW A;  4PTB A;  2QIZ A;  3FM8 C;  3ASL A;  3N9Q A;  5FER A;  3PLW A;  2C2L A;  3E2D A;  2VJF A;  4B7Y C;  2VJE A;  2JRJ A;  4OGE A;  5DIN A;  3LJU X;  5TAB A;  2MNZ A;  2PNX A;  2OWA A;  3FJU B;  1BOR A;  3O70 A;  5SVI B;  2ECV A;  2KWO A;  1Z6U A;  2KWK A;  3RPG C;  4LLB A;  2MIQ A;  1WEO A;  4A0C D;  2L5U A;  3V43 A;  4AP4 A;  4I7B A;  1WGM A;  2JM3 A;  1HYJ A;  1N87 A;  4AYC A;  3PUR A;  5AIT A;  3LVR E;  3KV5 A;  2M85 A;  2E6S A;  5K3Q A;  2OXQ C;  5B8D A;  2DJA A;  2H0D A;  1JM7 A;  4GB0 A;  2K17 A;  4C9Z A;  4R2Y A;  2LDR A;  4O62 A;  5TDW A;  2YYR A;  2VPG A;  2YSM A;  2CSZ A;  4QF3 A;  3FL2 A;  2JMD A;  4WZ2 A;  2HYE D;  4FO9 A;  2ECI A;  2K16 A;  3ZNI A;  1WEP A;  2IQJ A;  2MA5 A;  2VNF A;  5KH9 A;  4LKA A;  5SVX A;  4S3O B;  3M7K A;  4I7C A;  2LAU A;  3GV4 A;  4R8P K;  3IHP A;  3NG2 A;  3L1Z B;  2VP7 A;  2M3H A;  2L0B A;  1MBM A;  2RI7 A;  4N4F A;  4YAT A;  2K1J A;  5D1L B;  1G25 A;  1WEU A;  2LGV A;  2CKL B;  3O35 A;  2RR4 A;  3FAO A;  3KNV A;  5H1T A;  4S3O C;  3C6W A;  3O33 A;  1WEW A;  4YC9 A;  3KDE C;  3O7A A;  3EB5 A;  5LKX A;  1WE9 A;  2L7P A;  2HDP A;  2XB1 A;  2LGL A;  3MDB C;  3O47 A;  1CHC A;  3RTR B;  2MD8 C;  1DCQ A;  4YBS A;  5LKT A;  2M6M A;  4ZUX U;  3LVQ E;  1X4U A;  3SUB A;  2MT5 A;  3RPG B;  3HCU A;  2ECG A;  2YHO A;  4PPE A;  3DQV R;  2K4D A;  1V87 A;  2E6R A;  2BAY A;  3LDY A;  2FD4 A;  5D1K B;  3M62 A;  5B78 A;  2ECJ A;  5AIU A;  2VJE B;  2KGI A;  5C11 A;  4QQ4 A;  1WEQ A;  4GNG A;  4WZ3 B;  2XOZ A;  3KV6 A;  5FB0 A;  4YBT A;  1VD4 A;  2KR4 A;  2LGK A;  2MD7 B;  4TKP B;  3N9O A;  4GNF A;  3O34 A;  5SVI A;  2AN6 A;  2UZG A;  4I7D A;  2VPE A;  2JMI A;  4UI9 B;  4O64 A;  3FEH A;  3JUE A;  5LKU A;  3N9P A;  5H9M A;  4FIP A;  1HYI A;  2M13 A;  4ZQL A;  3VK6 A;  4L7X A;  2EGP A;  2KKX A;  4A4C A;  2XOC A;  2VPB A;  1K2F A;  2E61 A;  2F6J A;  2PUY A;  2KWN A;  3LQI A;  4B86 C;  1MM2 A;  1T1H A;  3KQI A;  5DKA A;  2YQL A;  3N9N A;  2KIZ A;  4BBQ A;  2CON A;  1MM3 A;  2MNY A;  3SHB A;  1RMD A;  4GND A;  4LJN A;  2CSV A;  4F1P A;  3U5M A;  3L1X A;  2EOD A;  1U6G B;  2F42 A;  1ZBD B;  2LV9 A;  5JG6 A;  5LKZ A;  4A49 A;  3Q1D A;  2L80 A;  2C2V S;  5J3X A;  3LQJ A;  4WA6 A;  5H1V A;  2DSM A;  2G43 A;  5EYA F;  4WZ0 A;  1WIL A;  4A4B A;  3ZPV E;  1WEM A;  2XP0 A;  2YHN A;  4AVX A;  2YUR A;  2KU3 A;  4NN2 A;  4V3L C;  2QJ0 A;  4AUQ B;  4X3G A;  4Z0O A;  4R7E A;  4LAD B;  4XI1 A;  2ECT A;  2P57 A;  2FFW A;  5FEY A;  1DVP A;  3GL6 A;  3ZYQ A;  3LQH A;  2ZET C;  4CA1 A;  1IYM A;  3N9L A;  4P5O B;  4GNE A;  1FP0 A;  1LDJ B;  3O37 A;  5C13 A;  3HCS A;  3T6R A;  5B77 A;  1WEV A;  2YSJ A;  1Z60 A;  3HTK C;  2VJF B;  3N9M A;  4N3W A;  2JUN A;  2FUU A;  4UP5 A;  3SOW A;  2YQM A;  4FK5 A;  4UP0 A;  4ZDT A;  3LRQ A;  5B75 A;  2FSA A;  4IC3 A;  3ZPV 1;  2QIC A;  2YW8 A;  3T7L A;  5TDR A;  1X4J A;  5G0F A;  2L43 A;  2MKE A;  4AYC B;  3MHS A;  2XEU A;  2MUM A;  3I2D A;  4V3K C;  2ECW A;  2L75 A;  1F62 A;  2CRR A;  4FJC A;  2YU4 A;  3T9K A;  1Z2Q A;  2VPD A;  3SOX A;  2YRE A;  2H0D B;  3H7H A;  1JM7 B;  2M1R A;  2Y1M A;  1WEN A;  3ZTG A;  1WEE A;  2LN0 A;  2CT2 A;  3DPL R;  4H9D A;  5G04 B;  4CCG X;  2LXH C;  4YAX A;  2Y43 A;  2RSD A;  3QZV A;  5KH7 A;  5TBN A;  2KFT A;  3SOU A;  2KKY A;  2CSY A;  4L58 A;  3ZVY A; 
#chains in the Genus database with same CATH homology
 2XP0 A;  3MDB C;  2XOY A;  2CSV A;  5SVI A;  3O47 A;  2E61 A;  2FD4 A;  2B0O E;  2MKE A;  3LVR E;  4H9D A;  4F1P A;  4OGE A;  1DCQ A;  3LJU X;  2RR4 A;  3DDT A;  2OWA A;  3FJU B;  4Z0O A;  3LVQ E;  5SVI B;  3FEH A;  5K3Q A;  3JUE A;  2EGM A;  2IQJ A;  2JUN A;  2CRR A;  2FFW A;  2P57 A;  4QQ4 A;  5SVX A;  3SUB A;  4OGC A;  2DJA A;  3M7K A;  2M13 A;  3LDY A;  3KDE C;  3Q1D A;  2LAU A;  2CON A;  5SVY A;  3T9K A;  2XOZ A;  2D8U A;  2CRW A;  2YRE A;  2L7P A;  2KKY A;  2EXU A;  3FM8 C;  2JM3 A;  3DWD A;  4O62 A;  2KKX A;  2YVR A;  3H7H A;  4Z0R A;  3PLW A;  3E2D A;  2XOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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