2EGMA

Solution structure of the zf-b_box domain from human tripartite motif protein 41
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
57
structure length
57
Chain Sequence
GSSGSSGTPGRGSRVTDQGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/metal binding protein
source organism Homo sapiens
publication title Solution structure of the zf-B_box domain from human Tripartite motif protein 41
rcsb
molecule keywords Tripartite motif-containing protein 41
total genus 6
structure length 57
sequence length 57
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2egmA00
3DDTA 2JUNA 2D8UA 2DJAA 3Q1DA 2CSVA 2YVRA 5K3QA 2EGMA
chains in the Genus database with same CATH superfamily
1XWHA 1WILA 2LGGA 2CKLB 4C9ZA 2MNZA 2CKLA 1U6GB 2DJAA 3T6RA 2VPDA 1CHCA 4WZ2A 3M7KA 1K2FA 3KV6A 5B8DA 3PHDA 2LXHC 1VYXA 4Z0OA 2L80A 5FB0A 5FB1A 3HTKC 2VP7A 3MDBC 2ECGA 4X3GA 3N9PA 2YYRA 3I2DA 4Z0RA 3GV4A 3LVRE 4R8PK 3LDYA 1X4IA 3N9NA 2RR4A 3SHBA 5C13A 2VJEA 3SUBA 2KWJA 3PUQA 1WGMA 2KKXA 4FO9A 5LKXA 4A4CA 2P57A 1Z2QA 2EA6A 1X4UA 2KREA 3SOXA 2ECJA 1E4UA 4YABA 4ZUXU 1DCQA 2LDRA 3KDEC 3M62A 4WA6A 2H0DB 2H0DA 2K16A 1BORA 2YHNA 2L0BA 2K17A 2FD4A 3FANA 3KNVA 4MSXA 2LGKA 2YU4A 2MA6A 4R7EA 5D1LB 5C11A 4A49A 3PURA 5FERA 4Q6FA 4YBSA 2M6MA 2KWNA 5D1KB 1JM7B 5D1MB 4YC9A 2YQLA 2QJ0A 4UI9B 2M85A 2MT5A 3T9KA 5TBNA 5SVXA 2HDPA 2MNYA 2VJFA 3C5KA 1WEEA 4YAXA 3O36A 5LCWB 1LDJB 4V3LC 1WEUA 4CA1A 1MM2A 2Y1MA 3U5MA 2L75A 2VNFA 4N3WA 5K3QA 5SVIB 5SVIA 2Y43A 2E6RA 4AP4A 2C2VS 2XOZA 1WEOA 4W4UA 4AVXA 2L5UA 4UP5A 4XI1A 1WEQA 2CT2A 1X4JA 5TDWA 2PNXA 2YT5A 2FUUA 2IDAA 3M63A 1G25A 3ZPV1 2XOCA 5TRBA 3T7LA 1MM3A 1VD4A 3MHHA 4PTBA 5LKZA 2F6JA 2OXQC 2KKYA 2MD8C 3O33A 3O35A 3FL2A 1T1HA 3EB6A 3ZNIA 2ECWA 1WEWA 2F6NA 4A0CD 4I7DA 3N9LA 2EGPA 4IC2A 5H1UA 2CSYA 2ECTA 2LXPC 2K1JA 2OWAA 2JM3A 2IQJA 4BBQA 1HYIA 1WEVA 4OGEA 5KH9A 2FUIA 1Z6UA 2EGMA 3KV5A 1FP0A 4O64A 4AYCB 4F1PA 3PLWA 3LQJA 2EODA 2VPGA 2ZETC 1VFYA 3DQVR 4A4BA 2KU3A 4GNEA 5LKUA 2ECNA 2KWOA 3H7HA 2XEUA 3GL6A 3RPGB 1WIMA 3LJUX 5I3LA 3HCUA 2E61A 1ZBDB 2KWKA 2M3HA 4LKAA 1MBMA 5TDRA 3N9OA 2XP0A 1JM7A 5G04B 4O62A 2JRJA 2AN6A 5B75A 2L7PA 1WFKA 1WEPA 3ZYQA 2MD7B 3V43A 2MIQA 4MVTA 4FK5A 5G0FA 5JG6A 2QICA 3DDTA 4ZDTA 2L43A 2LGVA 2G6QA 3L11A 4S3OB 2YW8A 3SOWA 3VK6A 3SOUA 5B76A 2RI7A 4NN2A 2KYUA 2PUYA 4PPEA 4I7BA 2F42A 1RMDA 1JOCA 2E6SA 3U5PA 2G45A 4LJNA 5DKAA 4I7CA 4ZQLA 5LKTA 4YATA 5G05B 3O37A 2RSDA 3NG2A 5H1VA 1Z60A 5EYAF 1FBVA 4FJCA 2K4DA 1WESA 4YBTA 3LQIA 2B0OE 3QZVA 4WZ3B 2JUNA 4R2YA 1WENA 2D8SA 4F52B 3O34A 4GNGA 2XB1A 2Y1NA 2DX8A 2KFTA 2YREA 5J3XA 5B79A 3HCTA 3L1XA 2ECVA 3O47A 1WEMA 2UZGA 1DVPA 5KH7A 3ZTGA 4AUQB 2CSZA 4B86C 3DWDA 2CSVA 4H9DA 5B77A 1IYMA 3ZVYA 3FEHA 2YHOA 2BAYA 4N4FA 2JMIA 3FAOA 2CRRA 5H1TA 1WE9A 4AYCA 3HCSA 4B7YC 3N9MA 4TKPB 2VJEB 2YSJA 3E2DA 2KR4A 3ZPVE 2FFWA 3DPLR 5AITA 2KGGA 2YURA 4V3KC 2EXUA 2FSAA 3FM8C 4L58A 1LDKC 2JMDA 1F62A 5TABA 2KIZA 2LGLA 5KH3A 2VPEA 2MKEA 2YSMA 2DSMA 4CCGX 4FIPA 3ASLA 4UP0A 2I50A 3O70A 4GNFA 4LK9A 1HYJA 3M99A 2QIZA 4BHWA 5FEYA 2KE1A 2MA5A 5B78A 2YUCA 2YQMA 3L1ZB 3RPGC 3JUEA 2LV9A 4OGCA 2LQ6A 1V87A 3LRQA 5SVYA 3ZVZB 2CRWA 5DINA 2D8UA 4QF2A 2M1RA 5AIUA 2M13A 3FJUB 4LLBA 4P5OB 2CONA 4GB0A 2C2LA 2LRIC 1N87A 3IHPA 2XOYA 3O7AA 4QF3A 4L7XA 5H9MA 2LN0A 2VPBA 2HYED 3U5OA 3LVQE 4WZ0A 2G43A 2VJFB 4YBMA 3LQHA 2YVRA 4S3OC 2ECIA 3Q1DA 2KGIA 2NAAA 4IC3A 3U5NA 2LAUA 2JMJA 3RTRB 3KQIA 4GNDA 4QQ4A 3N9QA 3C6WA 3MHSA 4LADB 3EB5A 2MUMA 4YADA
chains in the Genus database with same CATH topology
3MDBC 2JUNA 3JUEA 4OGCA 2P57A 3DWDA 2CSVA 4H9DA 5SVYA 2YVRA 3H7HA 2CRWA 2EGMA 3FEHA 4Z0RA 3DDTA 2MKEA 2D8UA 3LJUX 2CRRA 2DJAA 3Q1DA 3LVRE 4F1PA 2M13A 1DCQA 2E61A 2XOCA 3PLWA 3LDYA 3FJUB 2CONA 5K3QA 5SVIB 3KDEC 2RR4A 5SVIA 2LAUA 2XP0A 2OWAA 2XOYA 3M7KA 2JM3A 3E2DA 4O62A 2FD4A 2IQJA 4QQ4A 2FFWA 2KKYA 3SUBA 2YREA 3T9KA 2XOZA 4OGEA 2L7PA 3LVQE 4Z0OA 3O47A 5SVXA 2EXUA 2KKXA 3FM8C 2B0OE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DDT A;  2JUN A;  2D8U A;  2DJA A;  3Q1D A;  2CSV A;  2YVR A;  5K3Q A;  2EGM A; 
#chains in the Genus database with same CATH topology
 1XWH A;  1WIL A;  2LGG A;  2CKL B;  4C9Z A;  2MNZ A;  2CKL A;  1U6G B;  2DJA A;  3T6R A;  2VPD A;  1CHC A;  4WZ2 A;  3M7K A;  1K2F A;  3KV6 A;  5B8D A;  3PHD A;  2LXH C;  1VYX A;  4Z0O A;  2L80 A;  5FB0 A;  5FB1 A;  3HTK C;  2VP7 A;  3MDB C;  2ECG A;  4X3G A;  3N9P A;  2YYR A;  3I2D A;  4Z0R A;  3GV4 A;  3LVR E;  4R8P K;  3LDY A;  1X4I A;  3N9N A;  2RR4 A;  3SHB A;  5C13 A;  2VJE A;  3SUB A;  2KWJ A;  3PUQ A;  1WGM A;  2KKX A;  4FO9 A;  5LKX A;  4A4C A;  2P57 A;  1Z2Q A;  2EA6 A;  1X4U A;  2KRE A;  3SOX A;  2ECJ A;  1E4U A;  4YAB A;  4ZUX U;  1DCQ A;  2LDR A;  3KDE C;  3M62 A;  4WA6 A;  2H0D B;  2H0D A;  2K16 A;  1BOR A;  2YHN A;  2L0B A;  2K17 A;  2FD4 A;  3FAN A;  3KNV A;  4MSX A;  2LGK A;  2YU4 A;  2MA6 A;  4R7E A;  5D1L B;  5C11 A;  4A49 A;  3PUR A;  5FER A;  4Q6F A;  4YBS A;  2M6M A;  2KWN A;  5D1K B;  1JM7 B;  5D1M B;  4YC9 A;  2YQL A;  2QJ0 A;  4UI9 B;  2M85 A;  2MT5 A;  3T9K A;  5TBN A;  5SVX A;  2HDP A;  2MNY A;  2VJF A;  3C5K A;  1WEE A;  4YAX A;  3O36 A;  5LCW B;  1LDJ B;  4V3L C;  1WEU A;  4CA1 A;  1MM2 A;  2Y1M A;  3U5M A;  2L75 A;  2VNF A;  4N3W A;  5K3Q A;  5SVI B;  5SVI A;  2Y43 A;  2E6R A;  4AP4 A;  2C2V S;  2XOZ A;  1WEO A;  4W4U A;  4AVX A;  2L5U A;  4UP5 A;  4XI1 A;  1WEQ A;  2CT2 A;  1X4J A;  5TDW A;  2PNX A;  2YT5 A;  2FUU A;  2IDA A;  3M63 A;  1G25 A;  3ZPV 1;  2XOC A;  5TRB A;  3T7L A;  1MM3 A;  1VD4 A;  3MHH A;  4PTB A;  5LKZ A;  2F6J A;  2OXQ C;  2KKY A;  2MD8 C;  3O33 A;  3O35 A;  3FL2 A;  1T1H A;  3EB6 A;  3ZNI A;  2ECW A;  1WEW A;  2F6N A;  4A0C D;  4I7D A;  3N9L A;  2EGP A;  4IC2 A;  5H1U A;  2CSY A;  2ECT A;  2LXP C;  2K1J A;  2OWA A;  2JM3 A;  2IQJ A;  4BBQ A;  1HYI A;  1WEV A;  4OGE A;  5KH9 A;  2FUI A;  1Z6U A;  2EGM A;  3KV5 A;  1FP0 A;  4O64 A;  4AYC B;  4F1P A;  3PLW A;  3LQJ A;  2EOD A;  2VPG A;  2ZET C;  1VFY A;  3DQV R;  4A4B A;  2KU3 A;  4GNE A;  5LKU A;  2ECN A;  2KWO A;  3H7H A;  2XEU A;  3GL6 A;  3RPG B;  1WIM A;  3LJU X;  5I3L A;  3HCU A;  2E61 A;  1ZBD B;  2KWK A;  2M3H A;  4LKA A;  1MBM A;  5TDR A;  3N9O A;  2XP0 A;  1JM7 A;  5G04 B;  4O62 A;  2JRJ A;  2AN6 A;  5B75 A;  2L7P A;  1WFK A;  1WEP A;  3ZYQ A;  2MD7 B;  3V43 A;  2MIQ A;  4MVT A;  4FK5 A;  5G0F A;  5JG6 A;  2QIC A;  3DDT A;  4ZDT A;  2L43 A;  2LGV A;  2G6Q A;  3L11 A;  4S3O B;  2YW8 A;  3SOW A;  3VK6 A;  3SOU A;  5B76 A;  2RI7 A;  4NN2 A;  2KYU A;  2PUY A;  4PPE A;  4I7B A;  2F42 A;  1RMD A;  1JOC A;  2E6S A;  3U5P A;  2G45 A;  4LJN A;  5DKA A;  4I7C A;  4ZQL A;  5LKT A;  4YAT A;  5G05 B;  3O37 A;  2RSD A;  3NG2 A;  5H1V A;  1Z60 A;  5EYA F;  1FBV A;  4FJC A;  2K4D A;  1WES A;  4YBT A;  3LQI A;  2B0O E;  3QZV A;  4WZ3 B;  2JUN A;  4R2Y A;  1WEN A;  2D8S A;  4F52 B;  3O34 A;  4GNG A;  2XB1 A;  2Y1N A;  2DX8 A;  2KFT A;  2YRE A;  5J3X A;  5B79 A;  3HCT A;  3L1X A;  2ECV A;  3O47 A;  1WEM A;  2UZG A;  1DVP A;  5KH7 A;  3ZTG A;  4AUQ B;  2CSZ A;  4B86 C;  3DWD A;  2CSV A;  4H9D A;  5B77 A;  1IYM A;  3ZVY A;  3FEH A;  2YHO A;  2BAY A;  4N4F A;  2JMI A;  3FAO A;  2CRR A;  5H1T A;  1WE9 A;  4AYC A;  3HCS A;  4B7Y C;  3N9M A;  4TKP B;  2VJE B;  2YSJ A;  3E2D A;  2KR4 A;  3ZPV E;  2FFW A;  3DPL R;  5AIT A;  2KGG A;  2YUR A;  4V3K C;  2EXU A;  2FSA A;  3FM8 C;  4L58 A;  1LDK C;  2JMD A;  1F62 A;  5TAB A;  2KIZ A;  2LGL A;  5KH3 A;  2VPE A;  2MKE A;  2YSM A;  2DSM A;  4CCG X;  4FIP A;  3ASL A;  4UP0 A;  2I50 A;  3O70 A;  4GNF A;  4LK9 A;  1HYJ A;  3M99 A;  2QIZ A;  4BHW A;  5FEY A;  2KE1 A;  2MA5 A;  5B78 A;  2YUC A;  2YQM A;  3L1Z B;  3RPG C;  3JUE A;  2LV9 A;  4OGC A;  2LQ6 A;  1V87 A;  3LRQ A;  5SVY A;  3ZVZ B;  2CRW A;  5DIN A;  2D8U A;  4QF2 A;  2M1R A;  5AIU A;  2M13 A;  3FJU B;  4LLB A;  4P5O B;  2CON A;  4GB0 A;  2C2L A;  2LRI C;  1N87 A;  3IHP A;  2XOY A;  3O7A A;  4QF3 A;  4L7X A;  5H9M A;  2LN0 A;  2VPB A;  2HYE D;  3U5O A;  3LVQ E;  4WZ0 A;  2G43 A;  2VJF B;  4YBM A;  3LQH A;  2YVR A;  4S3O C;  2ECI A;  3Q1D A;  2KGI A;  2NAA A;  4IC3 A;  3U5N A;  2LAU A;  2JMJ A;  3RTR B;  3KQI A;  4GND A;  4QQ4 A;  3N9Q A;  3C6W A;  3MHS A;  4LAD B;  3EB5 A;  2MUM A;  4YAD A; 
#chains in the Genus database with same CATH homology
 3MDB C;  2JUN A;  3JUE A;  4OGC A;  2P57 A;  3DWD A;  2CSV A;  4H9D A;  5SVY A;  2YVR A;  3H7H A;  2CRW A;  2EGM A;  3FEH A;  4Z0R A;  3DDT A;  2MKE A;  2D8U A;  3LJU X;  2CRR A;  2DJA A;  3Q1D A;  3LVR E;  4F1P A;  2M13 A;  1DCQ A;  2E61 A;  2XOC A;  3PLW A;  3LDY A;  3FJU B;  2CON A;  5K3Q A;  5SVI B;  3KDE C;  2RR4 A;  5SVI A;  2LAU A;  2XP0 A;  2OWA A;  2XOY A;  3M7K A;  2JM3 A;  3E2D A;  4O62 A;  2FD4 A;  2IQJ A;  4QQ4 A;  2FFW A;  2KKY A;  3SUB A;  2YRE A;  3T9K A;  2XOZ A;  4OGE A;  2L7P A;  3LVQ E;  4Z0O A;  3O47 A;  5SVX A;  2EXU A;  2KKX A;  3FM8 C;  2B0O E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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