3KDEC

Crystal structure of the thap domain from d. melanogaster p-element transposase in complex with its natural dna binding site
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
76
structure length
74
Chain Sequence
MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAKGQTFKRRRLNADAVPSK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Dna binding protein/dna
molecule keywords 5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3'
total genus 13
structure length 74
sequence length 76
ec nomenclature
pdb deposition date 2009-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF05485 THAP THAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.180 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3kdeC01
3KDEC 2JM3A 2LAUA
chains in the Genus database with same CATH superfamily
4N3WA 2CT2A 1ZBDB 4L58A 1JM7A 5LKZA 3I2DA 3HCUA 2KWKA 5B79A 5B78A 3ZPV1 2XOZA 1WEQA 3M62A 2L5UA 2K17A 4LLBA 1VD4A 4R8PK 1HYIA 3LQIA 2DJAA 3T7LA 3DWDA 3RPGC 2JMDA 3FEHA 2LRIC 1WESA 4B86C 2K4DA 3VK6A 2VJEB 3FANA 2Y43A 3JUEA 5FB0A 4MVTA 1T1HA 3ZYQA 2YREA 2EODA 4A4BA 1JM7B 5G05B 2JMIA 2BAYA 2G43A 2L80A 1VYXA 2CSZA 2NAAA 4FIPA 4R7EA 2XB1A 1MBMA 3N9LA 2DX8A 5FB1A 4WZ2A 4N4FA 2ECNA 2YT5A 1Z60A 3L1XA 2YUCA 5TDWA 2KKXA 4I7CA 2D8SA 4GNFA 2CKLB 2XOCA 5DKAA 4LJNA 2IQJA 2PUYA 2MA6A 2RR4A 3SUBA 5H1TA 2OWAA 3HTKC 2MD8C 4QF3A 3T9KA 4NN2A 2PNXA 2JRJA 5LKUA 3ZVYA 3N9MA 5SVIA 4PPEA 2L7PA 1BORA 2CONA 4I7DA 3HCTA 4LKAA 4A49A 1MM3A 2MUMA 4UI9B 5I3LA 3ZVZB 4LADB 5H9MA 2KGIA 4QQ4A 2LXPC 3LVRE 5LKXA 4YABA 2ECGA 2RSDA 4O64A 3M7KA 4A4CA 4UP0A 1LDJB 1X4JA 3NG2A 3U5NA 2YYRA 2VNFA 5J3XA 3EB5A 2XOYA 4AP4A 2XP0A 2L43A 2M3HA 3H7HA 3U5PA 1X4UA 5G04B 2LGVA 2ECJA 3N9NA 3LQHA 2CRWA 2MD7B 5FEYA 1WILA 5C13A 3KNVA 2LAUA 3PHDA 2YU4A 3FL2A 1WEOA 2KYUA 2ECWA 3EB6A 4P5OB 4UP5A 2YURA 2MNZA 2QICA 4Z0RA 2F6NA 2CKLA 3O34A 3U5OA 2MKEA 5H1UA 4QF2A 2IDAA 2M1RA 2QIZA 4OGEA 4S3OB 2YVRA 3SOUA 2ECIA 3L1ZB 3PLWA 2QJ0A 1Z2QA 4BHWA 2YHOA 5LCWB 2CRRA 3O36A 2CSYA 4IC3A 1WEVA 4A0CD 2ECTA 4L7XA 3FJUB 4GNEA 4YBTA 2VJFA 4BBQA 5B75A 1V87A 4B7YC 4AYCB 2L75A 2JUNA 3GL6A 4GNGA 3QZVA 2FUUA 3LVQE 3RTRB 5FERA 3O70A 3DPLR 3KDEC 3C6WA 2OXQC 2XEUA 4GB0A 4IC2A 5SVIB 2FFWA 2M13A 4YBSA 3O35A 5B8DA 3KV6A 4YATA 1JOCA 2VPBA 3KV5A 2KFTA 4YADA 2VPEA 1WIMA 3DDTA 3L11A 2YSJA 2F42A 3T6RA 5DINA 2LGGA 3FM8C 5LKTA 3RPGB 4CA1A 1G25A 1N87A 1WFKA 3Q1DA 2E6SA 5AITA 2EXUA 3V43A 2L0BA 1CHCA 1LDKC 1WENA 2YQMA 2FD4A 3ZPVE 2VPGA 3SOWA 4GNDA 2HDPA 1E4UA 2LV9A 1FBVA 4O62A 2LQ6A 2KR4A 1MM2A 2M6MA 2B0OE 2AN6A 2E6RA 4H9DA 4LK9A 2H0DA 5C11A 2G6QA 2VJFB 5KH9A 2KWNA 3LDYA 3E2DA 3PUQA 3M63A 3SHBA 2FUIA 4Z0OA 4AYCA 2KWJA 2KGGA 2EGMA 3O7AA 4XI1A 3ZNIA 3N9PA 2EGPA 3LRQA 2LGLA 4I7BA 4YC9A 2JM3A 2DSMA 1FP0A 4ZDTA 2HYED 2ECVA 1XWHA 2YSMA 3O33A 2VPDA 3KQIA 3DQVR 5D1LB 1WEPA 2YQLA 4F52B 4FJCA 4Q6FA 5B77A 1DCQA 1K2FA 2KWOA 5EYAF 4R2YA 2KKYA 2RI7A 4C9ZA 3M99A 2YW8A 4ZQLA 1WEWA 2LN0A 5TBNA 3ZTGA 4X3GA 5AIUA 4V3KC 4CCGX 5D1KB 1RMDA 2F6JA 3LJUX 3MHHA 2YHNA 1WE9A 2VP7A 1IYMA 2LDRA 1F62A 4ZUXU 5KH3A 3IHPA 2P57A 2EA6A 4S3OC 3LQJA 3ASLA 1WEMA 2C2VS 1VFYA 2G45A 1Z6UA 4V3LC 5H1VA 3MHSA 2CSVA 2UZGA 5TABA 5TDRA 1WGMA 3MDBC 2VJEA 1X4IA 4YAXA 2KREA 2M85A 5JG6A 3GV4A 4FO9A 3O47A 2K16A 2D8UA 2FSAA 2C2LA 4AUQB 4MSXA 3PURA 5TRBA 2KIZA 2LGKA 2KU3A 2LXHC 3U5MA 3SOXA 1WEUA 3O37A 5B76A 4YBMA 4WZ3B 2KE1A 2MA5A 1DVPA 2H0DB 4PTBA 3C5KA 4FK5A 3HCSA 2ZETC 3N9QA 2MT5A 5G0FA 5D1MB 5SVYA 2MIQA 5KH7A 2Y1MA 4AVXA 4WA6A 4F1PA 4OGCA 2K1JA 4TKPB 4W4UA 3N9OA 5K3QA 1HYJA 1WEEA 1U6GB 2I50A 3FAOA 2MNYA 4WZ0A 2JMJA 2Y1NA 2E61A 5SVXA
chains in the Genus database with same CATH topology
4Z0RA 4H9DA 1DCQA 5SVYA 2P57A 2MKEA 2D8UA 2JM3A 2CRWA 3JUEA 3LVRE 2KKYA 2JUNA 2FD4A 4OGEA 5SVIA 4F1PA 4OGCA 3O47A 2YVRA 3DDTA 3M7KA 2KKXA 3PLWA 2L7PA 3LVQE 2CSVA 2LAUA 2XOZA 3LDYA 3E2DA 2CONA 2XOYA 3FM8C 3MDBC 2YREA 4Z0OA 2XOCA 5K3QA 2XP0A 4O62A 2CRRA 3KDEC 2IQJA 3Q1DA 2DJAA 3LJUX 3T9KA 2EXUA 2RR4A 3H7HA 3SUBA 2EGMA 3DWDA 5SVIB 3FEHA 2OWAA 2E61A 4QQ4A 3FJUB 5SVXA 2B0OE 2FFWA 2M13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KDE C;  2JM3 A;  2LAU A; 
#chains in the Genus database with same CATH topology
 4N3W A;  2CT2 A;  1ZBD B;  4L58 A;  1JM7 A;  5LKZ A;  3I2D A;  3HCU A;  2KWK A;  5B79 A;  5B78 A;  3ZPV 1;  2XOZ A;  1WEQ A;  3M62 A;  2L5U A;  2K17 A;  4LLB A;  1VD4 A;  4R8P K;  1HYI A;  3LQI A;  2DJA A;  3T7L A;  3DWD A;  3RPG C;  2JMD A;  3FEH A;  2LRI C;  1WES A;  4B86 C;  2K4D A;  3VK6 A;  2VJE B;  3FAN A;  2Y43 A;  3JUE A;  5FB0 A;  4MVT A;  1T1H A;  3ZYQ A;  2YRE A;  2EOD A;  4A4B A;  1JM7 B;  5G05 B;  2JMI A;  2BAY A;  2G43 A;  2L80 A;  1VYX A;  2CSZ A;  2NAA A;  4FIP A;  4R7E A;  2XB1 A;  1MBM A;  3N9L A;  2DX8 A;  5FB1 A;  4WZ2 A;  4N4F A;  2ECN A;  2YT5 A;  1Z60 A;  3L1X A;  2YUC A;  5TDW A;  2KKX A;  4I7C A;  2D8S A;  4GNF A;  2CKL B;  2XOC A;  5DKA A;  4LJN A;  2IQJ A;  2PUY A;  2MA6 A;  2RR4 A;  3SUB A;  5H1T A;  2OWA A;  3HTK C;  2MD8 C;  4QF3 A;  3T9K A;  4NN2 A;  2PNX A;  2JRJ A;  5LKU A;  3ZVY A;  3N9M A;  5SVI A;  4PPE A;  2L7P A;  1BOR A;  2CON A;  4I7D A;  3HCT A;  4LKA A;  4A49 A;  1MM3 A;  2MUM A;  4UI9 B;  5I3L A;  3ZVZ B;  4LAD B;  5H9M A;  2KGI A;  4QQ4 A;  2LXP C;  3LVR E;  5LKX A;  4YAB A;  2ECG A;  2RSD A;  4O64 A;  3M7K A;  4A4C A;  4UP0 A;  1LDJ B;  1X4J A;  3NG2 A;  3U5N A;  2YYR A;  2VNF A;  5J3X A;  3EB5 A;  2XOY A;  4AP4 A;  2XP0 A;  2L43 A;  2M3H A;  3H7H A;  3U5P A;  1X4U A;  5G04 B;  2LGV A;  2ECJ A;  3N9N A;  3LQH A;  2CRW A;  2MD7 B;  5FEY A;  1WIL A;  5C13 A;  3KNV A;  2LAU A;  3PHD A;  2YU4 A;  3FL2 A;  1WEO A;  2KYU A;  2ECW A;  3EB6 A;  4P5O B;  4UP5 A;  2YUR A;  2MNZ A;  2QIC A;  4Z0R A;  2F6N A;  2CKL A;  3O34 A;  3U5O A;  2MKE A;  5H1U A;  4QF2 A;  2IDA A;  2M1R A;  2QIZ A;  4OGE A;  4S3O B;  2YVR A;  3SOU A;  2ECI A;  3L1Z B;  3PLW A;  2QJ0 A;  1Z2Q A;  4BHW A;  2YHO A;  5LCW B;  2CRR A;  3O36 A;  2CSY A;  4IC3 A;  1WEV A;  4A0C D;  2ECT A;  4L7X A;  3FJU B;  4GNE A;  4YBT A;  2VJF A;  4BBQ A;  5B75 A;  1V87 A;  4B7Y C;  4AYC B;  2L75 A;  2JUN A;  3GL6 A;  4GNG A;  3QZV A;  2FUU A;  3LVQ E;  3RTR B;  5FER A;  3O70 A;  3DPL R;  3KDE C;  3C6W A;  2OXQ C;  2XEU A;  4GB0 A;  4IC2 A;  5SVI B;  2FFW A;  2M13 A;  4YBS A;  3O35 A;  5B8D A;  3KV6 A;  4YAT A;  1JOC A;  2VPB A;  3KV5 A;  2KFT A;  4YAD A;  2VPE A;  1WIM A;  3DDT A;  3L11 A;  2YSJ A;  2F42 A;  3T6R A;  5DIN A;  2LGG A;  3FM8 C;  5LKT A;  3RPG B;  4CA1 A;  1G25 A;  1N87 A;  1WFK A;  3Q1D A;  2E6S A;  5AIT A;  2EXU A;  3V43 A;  2L0B A;  1CHC A;  1LDK C;  1WEN A;  2YQM A;  2FD4 A;  3ZPV E;  2VPG A;  3SOW A;  4GND A;  2HDP A;  1E4U A;  2LV9 A;  1FBV A;  4O62 A;  2LQ6 A;  2KR4 A;  1MM2 A;  2M6M A;  2B0O E;  2AN6 A;  2E6R A;  4H9D A;  4LK9 A;  2H0D A;  5C11 A;  2G6Q A;  2VJF B;  5KH9 A;  2KWN A;  3LDY A;  3E2D A;  3PUQ A;  3M63 A;  3SHB A;  2FUI A;  4Z0O A;  4AYC A;  2KWJ A;  2KGG A;  2EGM A;  3O7A A;  4XI1 A;  3ZNI A;  3N9P A;  2EGP A;  3LRQ A;  2LGL A;  4I7B A;  4YC9 A;  2JM3 A;  2DSM A;  1FP0 A;  4ZDT A;  2HYE D;  2ECV A;  1XWH A;  2YSM A;  3O33 A;  2VPD A;  3KQI A;  3DQV R;  5D1L B;  1WEP A;  2YQL A;  4F52 B;  4FJC A;  4Q6F A;  5B77 A;  1DCQ A;  1K2F A;  2KWO A;  5EYA F;  4R2Y A;  2KKY A;  2RI7 A;  4C9Z A;  3M99 A;  2YW8 A;  4ZQL A;  1WEW A;  2LN0 A;  5TBN A;  3ZTG A;  4X3G A;  5AIU A;  4V3K C;  4CCG X;  5D1K B;  1RMD A;  2F6J A;  3LJU X;  3MHH A;  2YHN A;  1WE9 A;  2VP7 A;  1IYM A;  2LDR A;  1F62 A;  4ZUX U;  5KH3 A;  3IHP A;  2P57 A;  2EA6 A;  4S3O C;  3LQJ A;  3ASL A;  1WEM A;  2C2V S;  1VFY A;  2G45 A;  1Z6U A;  4V3L C;  5H1V A;  3MHS A;  2CSV A;  2UZG A;  5TAB A;  5TDR A;  1WGM A;  3MDB C;  2VJE A;  1X4I A;  4YAX A;  2KRE A;  2M85 A;  5JG6 A;  3GV4 A;  4FO9 A;  3O47 A;  2K16 A;  2D8U A;  2FSA A;  2C2L A;  4AUQ B;  4MSX A;  3PUR A;  5TRB A;  2KIZ A;  2LGK A;  2KU3 A;  2LXH C;  3U5M A;  3SOX A;  1WEU A;  3O37 A;  5B76 A;  4YBM A;  4WZ3 B;  2KE1 A;  2MA5 A;  1DVP A;  2H0D B;  4PTB A;  3C5K A;  4FK5 A;  3HCS A;  2ZET C;  3N9Q A;  2MT5 A;  5G0F A;  5D1M B;  5SVY A;  2MIQ A;  5KH7 A;  2Y1M A;  4AVX A;  4WA6 A;  4F1P A;  4OGC A;  2K1J A;  4TKP B;  4W4U A;  3N9O A;  5K3Q A;  1HYJ A;  1WEE A;  1U6G B;  2I50 A;  3FAO A;  2MNY A;  4WZ0 A;  2JMJ A;  2Y1N A;  2E61 A;  5SVX A; 
#chains in the Genus database with same CATH homology
 4Z0R A;  4H9D A;  1DCQ A;  5SVY A;  2P57 A;  2MKE A;  2D8U A;  2JM3 A;  2CRW A;  3JUE A;  3LVR E;  2KKY A;  2JUN A;  2FD4 A;  4OGE A;  5SVI A;  4F1P A;  4OGC A;  3O47 A;  2YVR A;  3DDT A;  3M7K A;  2KKX A;  3PLW A;  2L7P A;  3LVQ E;  2CSV A;  2LAU A;  2XOZ A;  3LDY A;  3E2D A;  2CON A;  2XOY A;  3FM8 C;  3MDB C;  2YRE A;  4Z0O A;  2XOC A;  5K3Q A;  2XP0 A;  4O62 A;  2CRR A;  3KDE C;  2IQJ A;  3Q1D A;  2DJA A;  3LJU X;  3T9K A;  2EXU A;  2RR4 A;  3H7H A;  3SUB A;  2EGM A;  3DWD A;  5SVI B;  3FEH A;  2OWA A;  2E61 A;  4QQ4 A;  3FJU B;  5SVX A;  2B0O E;  2FFW A;  2M13 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...