2KKYA

Solution structure of c-terminal domain of oxidized nleg2-3 (residue 90-191) from pathogenic e. coli o157:h7. northeast structural genomics consortium and midwest center for structural genomics target et109a
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
102
structure length
102
Chain Sequence
SQESIQNKISQCKFSVCPERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKHEECIYDDTRGNFIIKGN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Uncharacterized protein ECs2156
publication title NleG Type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Structural genomics, unknown function
total genus 21
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2009-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.80 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2kkyA00
2KKYA 2KKXA
chains in the Genus database with same CATH superfamily
1VD4A 3SUBA 2ECJA 2KU3A 2YURA 1LDKC 2LRIC 2YQMA 1RMDA 4WZ0A 1ZBDB 2VPBA 4LADB 4FO9A 4UI9B 5H1UA 1WEWA 1JM7B 1CHCA 2Y1MA 5KH9A 4YATA 3N9LA 2FUUA 2M85A 2FSAA 4OGCA 2VP7A 4P5OB 3H7HA 2P57A 3PURA 5H1VA 3HTKC 1K2FA 2VPGA 2Y1NA 3O36A 1VFYA 2MNZA 5B78A 3PLWA 4R2YA 1FBVA 4B7YC 5D1MB 2MD7B 2LAUA 2E6RA 5B77A 2D8UA 4W4UA 2NAAA 4N3WA 3LVRE 1HYJA 5C13A 2YSJA 2MT5A 2DJAA 2VJEB 3ZPV1 1XWHA 3GL6A 3O7AA 2LGGA 2D8SA 5K3QA 1F62A 4MSXA 2FUIA 3MDBC 1DCQA 3GV4A 5AIUA 5DINA 4XI1A 5FB0A 3JUEA 4YBMA 5G05B 2L0BA 2ECWA 1WE9A 2K4DA 4N4FA 4FK5A 2DSMA 2H0DB 3ZPVE 4F1PA 3HCTA 1Z60A 1WEOA 1MM2A 4WA6A 4L58A 1X4UA 2L80A 2UZGA 1BORA 3C6WA 5LKUA 1WGMA 2KYUA 3ZNIA 3T9KA 2MD8C 4GNEA 2KIZA 3V43A 5FERA 4F52B 2LXPC 5FB1A 5B79A 5B8DA 2ECVA 1U6GB 1X4IA 2KE1A 3U5OA 2CSZA 2F6NA 5D1LB 2ECIA 5J3XA 5LKZA 2VNFA 2LGVA 3Q1DA 4UP5A 3KV6A 3RTRB 1Z2QA 2YHOA 4C9ZA 2IDAA 4YC9A 3ASLA 3KV5A 2LXHC 2CKLA 2L7PA 2EGPA 4QF2A 4UP0A 4ZUXU 5TBNA 2YYRA 4QF3A 5B76A 3LJUX 3FAOA 4A4CA 5JG6A 3O37A 3QZVA 3L1XA 1N87A 4V3LC 2CRRA 3RPGC 4AP4A 2XOYA 4L7XA 1WIMA 3FL2A 2QIZA 4AUQB 4LK9A 2G43A 3IHPA 2MA6A 5SVYA 3O70A 4Q6FA 2L75A 5D1KB 3HCUA 2YREA 4BHWA 3LDYA 4FJCA 2KGGA 2M3HA 4GB0A 2KWNA 3O47A 3C5KA 3SOUA 2JM3A 3SHBA 4QQ4A 2HYED 2VPDA 2FD4A 4Z0RA 3NG2A 3KQIA 4ZQLA 2MKEA 2F6JA 2JMDA 2OWAA 3LRQA 2JRJA 3I2DA 1WILA 4A49A 3U5PA 2XOZA 2XP0A 2ECTA 2I50A 2XB1A 2JMIA 4H9DA 2KR4A 2EODA 2LGKA 2DX8A 1JOCA 4FIPA 4B86C 2HDPA 5TABA 3N9MA 2YSMA 2VJFA 3LVQE 2IQJA 3EB6A 5KH3A 3O34A 1WEEA 4O62A 4S3OB 1G25A 1FP0A 3ZVZB 4TKPB 1DVPA 5SVIA 1VYXA 5EYAF 3L1ZB 4YBTA 2JMJA 2KGIA 1WEUA 2K1JA 4YABA 4WZ3B 2YUCA 2RR4A 4GNDA 2L5UA 3LQIA 5AITA 2M1RA 3KNVA 2C2LA 2ECNA 1MBMA 3VK6A 1WESA 2K17A 4YADA 5H1TA 3M62A 2CRWA 2JUNA 4YBSA 2RI7A 1HYIA 2G6QA 2LGLA 2YT5A 4IC2A 3PUQA 1MM3A 3T7LA 2M6MA 2YU4A 2EXUA 2MUMA 4LJNA 1WFKA 5G04B 3N9QA 3FJUB 2VPEA 2XEUA 3FEHA 4NN2A 2KKYA 2RSDA 1WENA 3M99A 3M63A 2H0DA 1WEMA 5FEYA 3PHDA 4LLBA 5TDWA 4AYCA 2Y43A 2OXQC 2E6SA 3O35A 3ZVYA 2YVRA 5TRBA 3HCSA 2FFWA 3U5MA 3LQJA 1E4UA 3N9OA 2VJFB 2E61A 5B75A 2YQLA 3DDTA 2MA5A 3T6RA 3FM8C 4IC3A 4LKAA 2CSVA 5SVIB 5LCWB 2MIQA 2PUYA 4V3KC 4GNFA 2CONA 4A4BA 2LDRA 4S3OC 3RPGB 2KWKA 5SVXA 2QJ0A 2KWOA 2F42A 4AVXA 2KKXA 2YHNA 4WZ2A 4I7CA 4PTBA 1V87A 2LN0A 3LQHA 1JM7A 3O33A 2K16A 2ECGA 4CA1A 3KDEC 2G45A 4X3GA 5KH7A 4R8PK 2CT2A 2KREA 2PNXA 2C2VS 1T1HA 1WEQA 2CKLB 5LKTA 3DWDA 3L11A 1IYMA 2L43A 3DQVR 3N9NA 2M13A 5H9MA 2KFTA 3U5NA 3MHHA 5G0FA 1WEVA 5I3LA 3EB5A 4R7EA 2LQ6A 1X4JA 3ZYQA 4AYCB 3N9PA 4I7DA 2LV9A 4GNGA 2VJEA 4YAXA 3SOXA 1Z6UA 3E2DA 2XOCA 5LKXA 2CSYA 2EGMA 4Z0OA 3FANA 2MNYA 5C11A 3MHSA 4CCGX 4ZDTA 2BAYA 5TDRA 3DPLR 5DKAA 1LDJB 4BBQA 4I7BA 4PPEA 3ZTGA 2AN6A 1WEPA 4OGEA 2ZETC 3M7KA 3SOWA 2EA6A 2B0OE 2KWJA 4MVTA 4A0CD 4O64A 2YW8A 2QICA
chains in the Genus database with same CATH topology
2IQJA 2MKEA 2EXUA 3SUBA 2DJAA 3KDEC 5SVYA 2CSVA 2OWAA 3FJUB 5SVIB 3LVQE 3FEHA 2YVRA 4O62A 4OGEA 2KKYA 2FFWA 2YREA 2CONA 3LJUX 3LVRE 3M7KA 4F1PA 3Q1DA 5K3QA 3LDYA 3PLWA 2B0OE 2CRWA 2JUNA 2XOZA 5SVXA 3MDBC 2E61A 1DCQA 3DWDA 3O47A 5SVIA 2XP0A 2JM3A 2CRRA 3E2DA 2KKXA 2XOCA 2LAUA 4OGCA 4H9DA 3DDTA 2D8UA 2EGMA 3JUEA 2M13A 4QQ4A 4Z0OA 3H7HA 2XOYA 3T9KA 2RR4A 3FM8C 2L7PA 2FD4A 4Z0RA 2P57A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKY A;  2KKX A; 
#chains in the Genus database with same CATH topology
 1VD4 A;  3SUB A;  2ECJ A;  2KU3 A;  2YUR A;  1LDK C;  2LRI C;  2YQM A;  1RMD A;  4WZ0 A;  1ZBD B;  2VPB A;  4LAD B;  4FO9 A;  4UI9 B;  5H1U A;  1WEW A;  1JM7 B;  1CHC A;  2Y1M A;  5KH9 A;  4YAT A;  3N9L A;  2FUU A;  2M85 A;  2FSA A;  4OGC A;  2VP7 A;  4P5O B;  3H7H A;  2P57 A;  3PUR A;  5H1V A;  3HTK C;  1K2F A;  2VPG A;  2Y1N A;  3O36 A;  1VFY A;  2MNZ A;  5B78 A;  3PLW A;  4R2Y A;  1FBV A;  4B7Y C;  5D1M B;  2MD7 B;  2LAU A;  2E6R A;  5B77 A;  2D8U A;  4W4U A;  2NAA A;  4N3W A;  3LVR E;  1HYJ A;  5C13 A;  2YSJ A;  2MT5 A;  2DJA A;  2VJE B;  3ZPV 1;  1XWH A;  3GL6 A;  3O7A A;  2LGG A;  2D8S A;  5K3Q A;  1F62 A;  4MSX A;  2FUI A;  3MDB C;  1DCQ A;  3GV4 A;  5AIU A;  5DIN A;  4XI1 A;  5FB0 A;  3JUE A;  4YBM A;  5G05 B;  2L0B A;  2ECW A;  1WE9 A;  2K4D A;  4N4F A;  4FK5 A;  2DSM A;  2H0D B;  3ZPV E;  4F1P A;  3HCT A;  1Z60 A;  1WEO A;  1MM2 A;  4WA6 A;  4L58 A;  1X4U A;  2L80 A;  2UZG A;  1BOR A;  3C6W A;  5LKU A;  1WGM A;  2KYU A;  3ZNI A;  3T9K A;  2MD8 C;  4GNE A;  2KIZ A;  3V43 A;  5FER A;  4F52 B;  2LXP C;  5FB1 A;  5B79 A;  5B8D A;  2ECV A;  1U6G B;  1X4I A;  2KE1 A;  3U5O A;  2CSZ A;  2F6N A;  5D1L B;  2ECI A;  5J3X A;  5LKZ A;  2VNF A;  2LGV A;  3Q1D A;  4UP5 A;  3KV6 A;  3RTR B;  1Z2Q A;  2YHO A;  4C9Z A;  2IDA A;  4YC9 A;  3ASL A;  3KV5 A;  2LXH C;  2CKL A;  2L7P A;  2EGP A;  4QF2 A;  4UP0 A;  4ZUX U;  5TBN A;  2YYR A;  4QF3 A;  5B76 A;  3LJU X;  3FAO A;  4A4C A;  5JG6 A;  3O37 A;  3QZV A;  3L1X A;  1N87 A;  4V3L C;  2CRR A;  3RPG C;  4AP4 A;  2XOY A;  4L7X A;  1WIM A;  3FL2 A;  2QIZ A;  4AUQ B;  4LK9 A;  2G43 A;  3IHP A;  2MA6 A;  5SVY A;  3O70 A;  4Q6F A;  2L75 A;  5D1K B;  3HCU A;  2YRE A;  4BHW A;  3LDY A;  4FJC A;  2KGG A;  2M3H A;  4GB0 A;  2KWN A;  3O47 A;  3C5K A;  3SOU A;  2JM3 A;  3SHB A;  4QQ4 A;  2HYE D;  2VPD A;  2FD4 A;  4Z0R A;  3NG2 A;  3KQI A;  4ZQL A;  2MKE A;  2F6J A;  2JMD A;  2OWA A;  3LRQ A;  2JRJ A;  3I2D A;  1WIL A;  4A49 A;  3U5P A;  2XOZ A;  2XP0 A;  2ECT A;  2I50 A;  2XB1 A;  2JMI A;  4H9D A;  2KR4 A;  2EOD A;  2LGK A;  2DX8 A;  1JOC A;  4FIP A;  4B86 C;  2HDP A;  5TAB A;  3N9M A;  2YSM A;  2VJF A;  3LVQ E;  2IQJ A;  3EB6 A;  5KH3 A;  3O34 A;  1WEE A;  4O62 A;  4S3O B;  1G25 A;  1FP0 A;  3ZVZ B;  4TKP B;  1DVP A;  5SVI A;  1VYX A;  5EYA F;  3L1Z B;  4YBT A;  2JMJ A;  2KGI A;  1WEU A;  2K1J A;  4YAB A;  4WZ3 B;  2YUC A;  2RR4 A;  4GND A;  2L5U A;  3LQI A;  5AIT A;  2M1R A;  3KNV A;  2C2L A;  2ECN A;  1MBM A;  3VK6 A;  1WES A;  2K17 A;  4YAD A;  5H1T A;  3M62 A;  2CRW A;  2JUN A;  4YBS A;  2RI7 A;  1HYI A;  2G6Q A;  2LGL A;  2YT5 A;  4IC2 A;  3PUQ A;  1MM3 A;  3T7L A;  2M6M A;  2YU4 A;  2EXU A;  2MUM A;  4LJN A;  1WFK A;  5G04 B;  3N9Q A;  3FJU B;  2VPE A;  2XEU A;  3FEH A;  4NN2 A;  2KKY A;  2RSD A;  1WEN A;  3M99 A;  3M63 A;  2H0D A;  1WEM A;  5FEY A;  3PHD A;  4LLB A;  5TDW A;  4AYC A;  2Y43 A;  2OXQ C;  2E6S A;  3O35 A;  3ZVY A;  2YVR A;  5TRB A;  3HCS A;  2FFW A;  3U5M A;  3LQJ A;  1E4U A;  3N9O A;  2VJF B;  2E61 A;  5B75 A;  2YQL A;  3DDT A;  2MA5 A;  3T6R A;  3FM8 C;  4IC3 A;  4LKA A;  2CSV A;  5SVI B;  5LCW B;  2MIQ A;  2PUY A;  4V3K C;  4GNF A;  2CON A;  4A4B A;  2LDR A;  4S3O C;  3RPG B;  2KWK A;  5SVX A;  2QJ0 A;  2KWO A;  2F42 A;  4AVX A;  2KKX A;  2YHN A;  4WZ2 A;  4I7C A;  4PTB A;  1V87 A;  2LN0 A;  3LQH A;  1JM7 A;  3O33 A;  2K16 A;  2ECG A;  4CA1 A;  3KDE C;  2G45 A;  4X3G A;  5KH7 A;  4R8P K;  2CT2 A;  2KRE A;  2PNX A;  2C2V S;  1T1H A;  1WEQ A;  2CKL B;  5LKT A;  3DWD A;  3L11 A;  1IYM A;  2L43 A;  3DQV R;  3N9N A;  2M13 A;  5H9M A;  2KFT A;  3U5N A;  3MHH A;  5G0F A;  1WEV A;  5I3L A;  3EB5 A;  4R7E A;  2LQ6 A;  1X4J A;  3ZYQ A;  4AYC B;  3N9P A;  4I7D A;  2LV9 A;  4GNG A;  2VJE A;  4YAX A;  3SOX A;  1Z6U A;  3E2D A;  2XOC A;  5LKX A;  2CSY A;  2EGM A;  4Z0O A;  3FAN A;  2MNY A;  5C11 A;  3MHS A;  4CCG X;  4ZDT A;  2BAY A;  5TDR A;  3DPL R;  5DKA A;  1LDJ B;  4BBQ A;  4I7B A;  4PPE A;  3ZTG A;  2AN6 A;  1WEP A;  4OGE A;  2ZET C;  3M7K A;  3SOW A;  2EA6 A;  2B0O E;  2KWJ A;  4MVT A;  4A0C D;  4O64 A;  2YW8 A;  2QIC A; 
#chains in the Genus database with same CATH homology
 2IQJ A;  2MKE A;  2EXU A;  3SUB A;  2DJA A;  3KDE C;  5SVY A;  2CSV A;  2OWA A;  3FJU B;  5SVI B;  3LVQ E;  3FEH A;  2YVR A;  4O62 A;  4OGE A;  2KKY A;  2FFW A;  2YRE A;  2CON A;  3LJU X;  3LVR E;  3M7K A;  4F1P A;  3Q1D A;  5K3Q A;  3LDY A;  3PLW A;  2B0O E;  2CRW A;  2JUN A;  2XOZ A;  5SVX A;  3MDB C;  2E61 A;  1DCQ A;  3DWD A;  3O47 A;  5SVI A;  2XP0 A;  2JM3 A;  2CRR A;  3E2D A;  2KKX A;  2XOC A;  2LAU A;  4OGC A;  4H9D A;  3DDT A;  2D8U A;  2EGM A;  3JUE A;  2M13 A;  4QQ4 A;  4Z0O A;  3H7H A;  2XOY A;  3T9K A;  2RR4 A;  3FM8 C;  2L7P A;  2FD4 A;  4Z0R A;  2P57 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...