2KKYA

Solution structure of c-terminal domain of oxidized nleg2-3 (residue 90-191) from pathogenic e. coli o157:h7. northeast structural genomics consortium and midwest center for structural genomics target et109a
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
102
structure length
102
Chain Sequence
SQESIQNKISQCKFSVCPERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKHEECIYDDTRGNFIIKGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Escherichia coli
publication title NleG Type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases.
pubmed doi rcsb
molecule keywords Uncharacterized protein ECs2156
total genus 21
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2009-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.80 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2kkyA00
2KKYA 2KKXA
chains in the Genus database with same CATH superfamily
4AUQB 4ZQLA 2LAUA 2JMIA 4LKAA 4WZ3B 5B77A 5LKZA 4S3OB 2VPEA 2XEUA 2VJEB 2KREA 3IHPA 2LXPC 3ZVYA 5C11A 5I3LA 2L5UA 2KU3A 2YREA 2DJAA 4YAXA 4CA1A 4P5OB 4UP0A 5AITA 4OGEA 5DINA 5KH7A 5LKXA 2XB1A 3LRQA 2YURA 1VFYA 2HYED 2CSYA 2EA6A 3DWDA 1HYJA 1JM7B 2IQJA 2I50A 2CKLB 3EB5A 2YVRA 2CSZA 3SUBA 2H0DB 3LQJA 2F6NA 1T1HA 1WFKA 2FUIA 3C6WA 3O7AA 3N9MA 2K4DA 3M7KA 5G0FA 3N9LA 2C2VS 5LKTA 3RPGB 2LGVA 2VNFA 3M62A 4QF2A 3O70A 4S3OC 5TBNA 2BAYA 1FBVA 4N4FA 4GNEA 3N9QA 2QIZA 4PPEA 2CRRA 2XOYA 1Z6UA 2ECWA 2JMJA 3LVQE 5H1TA 3M63A 2D8UA 3KQIA 3N9OA 3Q1DA 2Y1MA 5TABA 2M13A 5H1VA 1HYIA 1CHCA 1JOCA 2KKYA 2KYUA 5EYAF 2LQ6A 4FJCA 2MT5A 4A4BA 5DKAA 2G43A 2Y43A 1IYMA 3C5KA 3HCTA 3RTRB 3MDBC 4PTBA 1K2FA 1XWHA 2L80A 4I7DA 3DDTA 4L7XA 4F1PA 4W4UA 5B79A 4X3GA 2YSMA 2IDAA 3E2DA 2FSAA 2XP0A 3PLWA 5G05B 2NAAA 3N9PA 5K3QA 4AYCA 4A49A 5SVYA 3VK6A 4NN2A 2F6JA 5LKUA 2ECIA 2RSDA 2YQMA 1MM3A 3GL6A 4QQ4A 3MHHA 3FEHA 2MD8C 2YT5A 3U5MA 1F62A 1WGMA 1G25A 2JRJA 3FJUB 3HCSA 4LJNA 4QF3A 4GNGA 2YQLA 1RMDA 2FFWA 3ZPVE 2CONA 2OWAA 1WEMA 4XI1A 5TDWA 1WILA 5KH9A 3ZTGA 2E6RA 2K1JA 3LDYA 4IC3A 4C9ZA 4TKPB 1V87A 2KWOA 2YHNA 2VPGA 2KFTA 1FP0A 1U6GB 2KWNA 1WEWA 5H9MA 4Z0OA 2VPDA 4WA6A 3JUEA 1WEOA 3T7LA 3HTKC 4YATA 1JM7A 2CT2A 2PUYA 5SVIA 2CKLA 4LADB 4YC9A 2VJFB 2KIZA 3KNVA 4LK9A 3LVRE 2B0OE 4WZ2A 5SVXA 2YHOA 2G45A 2C2LA 2JM3A 1VD4A 3LJUX 5J3XA 2HDPA 2MD7B 3PUQA 2P57A 4L58A 2FD4A 2ECJA 3NG2A 1N87A 1ZBDB 3H7HA 3ZPV1 2KWKA 1X4IA 1LDJB 2Y1NA 2ZETC 4R8PK 4FK5A 5G04B 3L11A 3T9KA 5FEYA 3QZVA 2EGMA 3LQHA 2LGKA 4UI9B 4MVTA 4IC2A 3U5PA 5FB0A 3FL2A 2JUNA 2OXQC 3I2DA 2LV9A 4F52B 5FERA 4YADA 4AYCB 2LGGA 1LDKC 3PURA 3O37A 2YYRA 2LDRA 3M99A 3KV6A 2MIQA 4AVXA 1E4UA 4AP4A 2YSJA 1WEEA 2AN6A 4BHWA 2MNYA 2F42A 2JMDA 2M3HA 4YBTA 4B86C 3L1ZB 4R7EA 2KKXA 2LXHC 5D1LB 3GV4A 4A0CD 5H1UA 2EODA 3FM8C 2ECNA 2LN0A 5B75A 2QJ0A 3LQIA 2KE1A 3ZVZB 2MUMA 4I7BA 4A4CA 1WEUA 5B78A 2DX8A 2YUCA 4B7YC 3U5NA 4LLBA 1DCQA 3PHDA 2LGLA 1BORA 3V43A 1WENA 2M85A 3U5OA 3SOUA 2EGPA 2EXUA 4R2YA 2K17A 2CSVA 3O36A 4Z0RA 2VJEA 2M6MA 3O35A 2ECVA 4YBSA 2E61A 2M1RA 4OGCA 3SOWA 4GNFA 3SHBA 1X4UA 2L43A 3EB6A 2E6SA 2KR4A 1Z2QA 4V3KC 5SVIB 2PNXA 2VPBA 2KGGA 3DQVR 2DSMA 3ZYQA 2KGIA 1WEVA 4WZ0A 2ECGA 5TDRA 2YU4A 2L0BA 3O34A 3MHSA 3FAOA 5B8DA 4ZDTA 2H0DA 4N3WA 5D1KB 4GNDA 2L7PA 2UZGA 3N9NA 1MBMA 2XOZA 3SOXA 5C13A 4UP5A 1WESA 2YW8A 2RR4A 1WEPA 3O33A 4YBMA 5LCWB 2MKEA 2QICA 5AIUA 4O64A 1DVPA 2VJFA 3T6RA 2XOCA 2MA6A 5D1MB 1X4JA 3KDEC 2ECTA 3O47A 2CRWA 4O62A 5B76A 2RI7A 4FIPA 1WEQA 1WIMA 5FB1A 4H9DA 2L75A 4I7CA 2G6QA 5TRBA 2MNZA 1WE9A 4MSXA 4BBQA 2FUUA 1MM2A 2K16A 3HCUA 4GB0A 3ZNIA 2VP7A 3L1XA 4YABA 5KH3A 3KV5A 1VYXA 2KWJA 2LRIC 4V3LC 4Q6FA 5JG6A 1Z60A 2MA5A 3FANA 4CCGX 3ASLA 3DPLR 4ZUXU 4FO9A 3RPGC 2D8SA
chains in the Genus database with same CATH topology
5SVYA 2B0OE 5SVXA 3MDBC 2E61A 2EGMA 3LVQE 2LAUA 2JM3A 1DCQA 4OGCA 2D8UA 3LJUX 2FFWA 2XOCA 2P57A 2KKXA 2FD4A 3M7KA 3KDEC 3DDTA 4Z0OA 3DWDA 2JUNA 3Q1DA 4QQ4A 2CONA 4F1PA 2L7PA 2IQJA 3FEHA 3O47A 5SVIB 2OWAA 2CRWA 4O62A 3E2DA 2M13A 2EXUA 2XOZA 2XP0A 3PLWA 3JUEA 3FM8C 4H9DA 2KKYA 2YVRA 3H7HA 3LVRE 2RR4A 2CSVA 3SUBA 2YREA 2DJAA 4Z0RA 2CRRA 5SVIA 4OGEA 5K3QA 2XOYA 3LDYA 3T9KA 2MKEA 3FJUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKY A;  2KKX A; 
#chains in the Genus database with same CATH topology
 4AUQ B;  4ZQL A;  2LAU A;  2JMI A;  4LKA A;  4WZ3 B;  5B77 A;  5LKZ A;  4S3O B;  2VPE A;  2XEU A;  2VJE B;  2KRE A;  3IHP A;  2LXP C;  3ZVY A;  5C11 A;  5I3L A;  2L5U A;  2KU3 A;  2YRE A;  2DJA A;  4YAX A;  4CA1 A;  4P5O B;  4UP0 A;  5AIT A;  4OGE A;  5DIN A;  5KH7 A;  5LKX A;  2XB1 A;  3LRQ A;  2YUR A;  1VFY A;  2HYE D;  2CSY A;  2EA6 A;  3DWD A;  1HYJ A;  1JM7 B;  2IQJ A;  2I50 A;  2CKL B;  3EB5 A;  2YVR A;  2CSZ A;  3SUB A;  2H0D B;  3LQJ A;  2F6N A;  1T1H A;  1WFK A;  2FUI A;  3C6W A;  3O7A A;  3N9M A;  2K4D A;  3M7K A;  5G0F A;  3N9L A;  2C2V S;  5LKT A;  3RPG B;  2LGV A;  2VNF A;  3M62 A;  4QF2 A;  3O70 A;  4S3O C;  5TBN A;  2BAY A;  1FBV A;  4N4F A;  4GNE A;  3N9Q A;  2QIZ A;  4PPE A;  2CRR A;  2XOY A;  1Z6U A;  2ECW A;  2JMJ A;  3LVQ E;  5H1T A;  3M63 A;  2D8U A;  3KQI A;  3N9O A;  3Q1D A;  2Y1M A;  5TAB A;  2M13 A;  5H1V A;  1HYI A;  1CHC A;  1JOC A;  2KKY A;  2KYU A;  5EYA F;  2LQ6 A;  4FJC A;  2MT5 A;  4A4B A;  5DKA A;  2G43 A;  2Y43 A;  1IYM A;  3C5K A;  3HCT A;  3RTR B;  3MDB C;  4PTB A;  1K2F A;  1XWH A;  2L80 A;  4I7D A;  3DDT A;  4L7X A;  4F1P A;  4W4U A;  5B79 A;  4X3G A;  2YSM A;  2IDA A;  3E2D A;  2FSA A;  2XP0 A;  3PLW A;  5G05 B;  2NAA A;  3N9P A;  5K3Q A;  4AYC A;  4A49 A;  5SVY A;  3VK6 A;  4NN2 A;  2F6J A;  5LKU A;  2ECI A;  2RSD A;  2YQM A;  1MM3 A;  3GL6 A;  4QQ4 A;  3MHH A;  3FEH A;  2MD8 C;  2YT5 A;  3U5M A;  1F62 A;  1WGM A;  1G25 A;  2JRJ A;  3FJU B;  3HCS A;  4LJN A;  4QF3 A;  4GNG A;  2YQL A;  1RMD A;  2FFW A;  3ZPV E;  2CON A;  2OWA A;  1WEM A;  4XI1 A;  5TDW A;  1WIL A;  5KH9 A;  3ZTG A;  2E6R A;  2K1J A;  3LDY A;  4IC3 A;  4C9Z A;  4TKP B;  1V87 A;  2KWO A;  2YHN A;  2VPG A;  2KFT A;  1FP0 A;  1U6G B;  2KWN A;  1WEW A;  5H9M A;  4Z0O A;  2VPD A;  4WA6 A;  3JUE A;  1WEO A;  3T7L A;  3HTK C;  4YAT A;  1JM7 A;  2CT2 A;  2PUY A;  5SVI A;  2CKL A;  4LAD B;  4YC9 A;  2VJF B;  2KIZ A;  3KNV A;  4LK9 A;  3LVR E;  2B0O E;  4WZ2 A;  5SVX A;  2YHO A;  2G45 A;  2C2L A;  2JM3 A;  1VD4 A;  3LJU X;  5J3X A;  2HDP A;  2MD7 B;  3PUQ A;  2P57 A;  4L58 A;  2FD4 A;  2ECJ A;  3NG2 A;  1N87 A;  1ZBD B;  3H7H A;  3ZPV 1;  2KWK A;  1X4I A;  1LDJ B;  2Y1N A;  2ZET C;  4R8P K;  4FK5 A;  5G04 B;  3L11 A;  3T9K A;  5FEY A;  3QZV A;  2EGM A;  3LQH A;  2LGK A;  4UI9 B;  4MVT A;  4IC2 A;  3U5P A;  5FB0 A;  3FL2 A;  2JUN A;  2OXQ C;  3I2D A;  2LV9 A;  4F52 B;  5FER A;  4YAD A;  4AYC B;  2LGG A;  1LDK C;  3PUR A;  3O37 A;  2YYR A;  2LDR A;  3M99 A;  3KV6 A;  2MIQ A;  4AVX A;  1E4U A;  4AP4 A;  2YSJ A;  1WEE A;  2AN6 A;  4BHW A;  2MNY A;  2F42 A;  2JMD A;  2M3H A;  4YBT A;  4B86 C;  3L1Z B;  4R7E A;  2KKX A;  2LXH C;  5D1L B;  3GV4 A;  4A0C D;  5H1U A;  2EOD A;  3FM8 C;  2ECN A;  2LN0 A;  5B75 A;  2QJ0 A;  3LQI A;  2KE1 A;  3ZVZ B;  2MUM A;  4I7B A;  4A4C A;  1WEU A;  5B78 A;  2DX8 A;  2YUC A;  4B7Y C;  3U5N A;  4LLB A;  1DCQ A;  3PHD A;  2LGL A;  1BOR A;  3V43 A;  1WEN A;  2M85 A;  3U5O A;  3SOU A;  2EGP A;  2EXU A;  4R2Y A;  2K17 A;  2CSV A;  3O36 A;  4Z0R A;  2VJE A;  2M6M A;  3O35 A;  2ECV A;  4YBS A;  2E61 A;  2M1R A;  4OGC A;  3SOW A;  4GNF A;  3SHB A;  1X4U A;  2L43 A;  3EB6 A;  2E6S A;  2KR4 A;  1Z2Q A;  4V3K C;  5SVI B;  2PNX A;  2VPB A;  2KGG A;  3DQV R;  2DSM A;  3ZYQ A;  2KGI A;  1WEV A;  4WZ0 A;  2ECG A;  5TDR A;  2YU4 A;  2L0B A;  3O34 A;  3MHS A;  3FAO A;  5B8D A;  4ZDT A;  2H0D A;  4N3W A;  5D1K B;  4GND A;  2L7P A;  2UZG A;  3N9N A;  1MBM A;  2XOZ A;  3SOX A;  5C13 A;  4UP5 A;  1WES A;  2YW8 A;  2RR4 A;  1WEP A;  3O33 A;  4YBM A;  5LCW B;  2MKE A;  2QIC A;  5AIU A;  4O64 A;  1DVP A;  2VJF A;  3T6R A;  2XOC A;  2MA6 A;  5D1M B;  1X4J A;  3KDE C;  2ECT A;  3O47 A;  2CRW A;  4O62 A;  5B76 A;  2RI7 A;  4FIP A;  1WEQ A;  1WIM A;  5FB1 A;  4H9D A;  2L75 A;  4I7C A;  2G6Q A;  5TRB A;  2MNZ A;  1WE9 A;  4MSX A;  4BBQ A;  2FUU A;  1MM2 A;  2K16 A;  3HCU A;  4GB0 A;  3ZNI A;  2VP7 A;  3L1X A;  4YAB A;  5KH3 A;  3KV5 A;  1VYX A;  2KWJ A;  2LRI C;  4V3L C;  4Q6F A;  5JG6 A;  1Z60 A;  2MA5 A;  3FAN A;  4CCG X;  3ASL A;  3DPL R;  4ZUX U;  4FO9 A;  3RPG C;  2D8S A; 
#chains in the Genus database with same CATH homology
 5SVY A;  2B0O E;  5SVX A;  3MDB C;  2E61 A;  2EGM A;  3LVQ E;  2LAU A;  2JM3 A;  1DCQ A;  4OGC A;  2D8U A;  3LJU X;  2FFW A;  2XOC A;  2P57 A;  2KKX A;  2FD4 A;  3M7K A;  3KDE C;  3DDT A;  4Z0O A;  3DWD A;  2JUN A;  3Q1D A;  4QQ4 A;  2CON A;  4F1P A;  2L7P A;  2IQJ A;  3FEH A;  3O47 A;  5SVI B;  2OWA A;  2CRW A;  4O62 A;  3E2D A;  2M13 A;  2EXU A;  2XOZ A;  2XP0 A;  3PLW A;  3JUE A;  3FM8 C;  4H9D A;  2KKY A;  2YVR A;  3H7H A;  3LVR E;  2RR4 A;  2CSV A;  3SUB A;  2YRE A;  2DJA A;  4Z0R A;  2CRR A;  5SVI A;  4OGE A;  5K3Q A;  2XOY A;  3LDY A;  3T9K A;  2MKE A;  3FJU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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