2CSVA

Solution structure of the zf-b_box type2 domain of human tripartite motif protein trim29 isoform alpha
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
GSSGSSGQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (15-18)TI1 (21-24)AH1 (41-46)S1 (30-32)S3 (53-55)TIV5 (46-49)TIV6 (48-51)TIV4 (32-35)AH2 (56-63)S2 (37-39)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Solution structure of the zf-B_box type2 domain of human tripartite motif protein TRIM29 isoform alpha
rcsb
molecule keywords Tripartite motif protein 29
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2csvA00
2JUNA 2CSVA 3DDTA 2YVRA 2DJAA 5K3QA 2D8UA 3Q1DA 2EGMA
chains in the Genus database with same CATH superfamily
2EODA 5SVXA 4MSXA 3U5MA 2KE1A 2KFTA 1WEOA 4GNEA 3E2DA 2F6NA 2JMJA 3EB5A 1WFKA 2F6JA 5H9MA 3U5NA 1G25A 2H0DB 2M6MA 3EB6A 3ZTGA 3DWDA 4IC2A 1E4UA 4AUQB 3O37A 1WEUA 4V3LC 1F62A 3HCUA 3ZPVE 2E6RA 2LDRA 1Z60A 4ZDTA 2YSJA 4GB0A 2K16A 4OGEA 1WEVA 4YC9A 4A4CA 2RSDA 5J3XA 3ZNIA 2FSAA 5B78A 1T1HA 4FIPA 3L1XA 2YHNA 2RR4A 1WEEA 3N9PA 2YHOA 2KGGA 3ZVYA 1X4UA 2C2LA 5LKZA 4R8PK 1JM7B 2OXQC 2VNFA 2VJFA 4S3OC 4OGCA 2M1RA 2CONA 2YVRA 4GNGA 5TRBA 2YURA 3LQIA 3LQJA 1WILA 1DVPA 5LKXA 1WEWA 5K3QA 2K1JA 2MT5A 5I3LA 2KWNA 2L0BA 2E61A 4UP0A 3O7AA 2XOYA 3O47A 1ZBDB 5B76A 1U6GB 4FO9A 4S3OB 3M62A 2D8UA 1VD4A 3VK6A 3JUEA 3T9KA 2DSMA 4CCGX 2DX8A 2IDAA 4WZ0A 1BORA 2FUIA 3V43A 2EGMA 4Q6FA 3T7LA 1WEMA 2K4DA 3FAOA 1IYMA 4N3WA 3FJUB 3SOWA 3PUQA 3FL2A 4FK5A 4XI1A 1HYJA 5FERA 3C5KA 5DKAA 3ZYQA 4O64A 2RI7A 2NAAA 5TABA 2OWAA 4Z0RA 1VYXA 2JMDA 2IQJA 5TDRA 3KDEC 1HYIA 2QJ0A 3M7KA 4QF3A 2JM3A 2PNXA 3M99A 3FM8C 2L80A 2CSYA 2LV9A 2XEUA 4L7XA 2YT5A 4X3GA 4YBMA 2LQ6A 2CKLA 2EGPA 2KYUA 4LK9A 4Z0OA 4TKPB 2CRWA 2M3HA 5JG6A 5B75A 3KV5A 2VJFB 5H1TA 2XB1A 4P5OB 2CSZA 5D1KB 2E6SA 2LGGA 3FEHA 2D8SA 1MM3A 1WEPA 3L11A 2Y1NA 2ZETC 2L7PA 2LXHC 1X4JA 4LKAA 4QQ4A 5LKTA 2CT2A 2JMIA 4MVTA 2MKEA 3T6RA 3KV6A 2XOCA 4YBTA 4B86C 5D1MB 1WGMA 2FFWA 4O62A 5H1UA 4A49A 4BHWA 1DCQA 3KNVA 2LXPC 3HCTA 2K17A 2LGKA 5SVYA 2HDPA 2ECGA 3IHPA 1Z2QA 5B8DA 2YUCA 4QF2A 2B0OE 2MNZA 2LAUA 4CA1A 3SOXA 2QICA 4W4UA 4AP4A 3H7HA 5FB0A 1MM2A 2VPDA 3KQIA 4PPEA 3I2DA 2FUUA 3N9NA 4F52B 4YADA 1WENA 5LCWB 2VP7A 4R7EA 2XP0A 5C13A 2MD8C 2LN0A 2QIZA 3O70A 4YATA 3MDBC 3GL6A 4YBSA 4I7CA 4N4FA 2MA6A 1WEQA 2C2VS 2LGVA 5FB1A 3L1ZB 4R2YA 3ZVZB 2EXUA 2MNYA 2UZGA 2ECWA 2L75A 2ECVA 3LRQA 3PHDA 2ECIA 4YAXA 1RMDA 2KREA 1LDKC 4H9DA 2AN6A 2YQLA 3LQHA 2KWKA 1V87A 5H1VA 1CHCA 2YU4A 4I7BA 5SVIA 4A4BA 2HYED 2VPGA 2EA6A 2CKLB 2XOZA 2F42A 4AVXA 2KR4A 2CSVA 3LVQE 2G6QA 1VFYA 4B7YC 4UP5A 5G05B 1X4IA 2KKXA 3PURA 2BAYA 3O35A 1Z6UA 4BBQA 2VJEA 2MIQA 4ZUXU 2MD7B 2YQMA 2I50A 4LLBA 3SHBA 3U5OA 4A0CD 3GV4A 2ECNA 3Q1DA 5DINA 2KWOA 2ECTA 2M85A 3LDYA 5TDWA 4C9ZA 3C6WA 5D1LB 3QZVA 2FD4A 3HTKC 2KWJA 2YYRA 5KH3A 5C11A 4ZQLA 3O33A 3N9LA 4WA6A 3MHSA 4YABA 4I7DA 3FANA 2LRIC 2MUMA 3ZPV1 3M63A 1LDJB 2VPBA 5G0FA 1N87A 2LGLA 4LJNA 2H0DA 2G45A 3NG2A 2Y1MA 3N9OA 5AIUA 5LKUA 2PUYA 1FBVA 3O34A 5KH7A 5B79A 3SUBA 3RPGC 4AYCB 4WZ3B 3LJUX 2MA5A 3ASLA 3O36A 3DDTA 5SVIB 1FP0A 5EYAF 2VPEA 3HCSA 3LVRE 4WZ2A 5B77A 5TBNA 1JOCA 4LADB 5G04B 4PTBA 4L58A 3SOUA 2YW8A 3N9QA 2KIZA 1WESA 1WIMA 1XWHA 2YREA 4GNFA 4AYCA 1JM7A 4NN2A 3RTRB 2JRJA 2M13A 2L5UA 2Y43A 3N9MA 5AITA 3RPGB 3PLWA 2KKYA 2VJEB 4IC3A 1K2FA 4UI9B 2DJAA 2KU3A 2YSMA 4V3KC 5KH9A 3MHHA 2L43A 4F1PA 3DPLR 5FEYA 2P57A 2CRRA 2KGIA 2G43A 1WE9A 3DQVR 4GNDA 2JUNA 4FJCA 1MBMA 3U5PA 2ECJA
chains in the Genus database with same CATH topology
2MKEA 3JUEA 2CSVA 3T9KA 2EXUA 3LVQE 5SVXA 2OWAA 4F1PA 4Z0OA 2XOCA 4Z0RA 2CRWA 3H7HA 2EGMA 2E61A 4O62A 2FFWA 2IQJA 3SUBA 3KDEC 2P57A 3LJUX 3FJUB 2XP0A 3E2DA 3Q1DA 2YREA 4OGEA 2CRRA 3M7KA 4H9DA 1DCQA 2M13A 4OGCA 5SVYA 2JM3A 3DDTA 2CONA 3LDYA 2KKXA 2YVRA 3FM8C 3FEHA 5SVIB 2XOYA 3O47A 5SVIA 3PLWA 2KKYA 3MDBC 2JUNA 2L7PA 3LVRE 4QQ4A 2B0OE 2DJAA 2FD4A 5K3QA 2D8UA 2LAUA 2XOZA 3DWDA 2RR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JUN A;  2CSV A;  3DDT A;  2YVR A;  2DJA A;  5K3Q A;  2D8U A;  3Q1D A;  2EGM A; 
#chains in the Genus database with same CATH topology
 2EOD A;  5SVX A;  4MSX A;  3U5M A;  2KE1 A;  2KFT A;  1WEO A;  4GNE A;  3E2D A;  2F6N A;  2JMJ A;  3EB5 A;  1WFK A;  2F6J A;  5H9M A;  3U5N A;  1G25 A;  2H0D B;  2M6M A;  3EB6 A;  3ZTG A;  3DWD A;  4IC2 A;  1E4U A;  4AUQ B;  3O37 A;  1WEU A;  4V3L C;  1F62 A;  3HCU A;  3ZPV E;  2E6R A;  2LDR A;  1Z60 A;  4ZDT A;  2YSJ A;  4GB0 A;  2K16 A;  4OGE A;  1WEV A;  4YC9 A;  4A4C A;  2RSD A;  5J3X A;  3ZNI A;  2FSA A;  5B78 A;  1T1H A;  4FIP A;  3L1X A;  2YHN A;  2RR4 A;  1WEE A;  3N9P A;  2YHO A;  2KGG A;  3ZVY A;  1X4U A;  2C2L A;  5LKZ A;  4R8P K;  1JM7 B;  2OXQ C;  2VNF A;  2VJF A;  4S3O C;  4OGC A;  2M1R A;  2CON A;  2YVR A;  4GNG A;  5TRB A;  2YUR A;  3LQI A;  3LQJ A;  1WIL A;  1DVP A;  5LKX A;  1WEW A;  5K3Q A;  2K1J A;  2MT5 A;  5I3L A;  2KWN A;  2L0B A;  2E61 A;  4UP0 A;  3O7A A;  2XOY A;  3O47 A;  1ZBD B;  5B76 A;  1U6G B;  4FO9 A;  4S3O B;  3M62 A;  2D8U A;  1VD4 A;  3VK6 A;  3JUE A;  3T9K A;  2DSM A;  4CCG X;  2DX8 A;  2IDA A;  4WZ0 A;  1BOR A;  2FUI A;  3V43 A;  2EGM A;  4Q6F A;  3T7L A;  1WEM A;  2K4D A;  3FAO A;  1IYM A;  4N3W A;  3FJU B;  3SOW A;  3PUQ A;  3FL2 A;  4FK5 A;  4XI1 A;  1HYJ A;  5FER A;  3C5K A;  5DKA A;  3ZYQ A;  4O64 A;  2RI7 A;  2NAA A;  5TAB A;  2OWA A;  4Z0R A;  1VYX A;  2JMD A;  2IQJ A;  5TDR A;  3KDE C;  1HYI A;  2QJ0 A;  3M7K A;  4QF3 A;  2JM3 A;  2PNX A;  3M99 A;  3FM8 C;  2L80 A;  2CSY A;  2LV9 A;  2XEU A;  4L7X A;  2YT5 A;  4X3G A;  4YBM A;  2LQ6 A;  2CKL A;  2EGP A;  2KYU A;  4LK9 A;  4Z0O A;  4TKP B;  2CRW A;  2M3H A;  5JG6 A;  5B75 A;  3KV5 A;  2VJF B;  5H1T A;  2XB1 A;  4P5O B;  2CSZ A;  5D1K B;  2E6S A;  2LGG A;  3FEH A;  2D8S A;  1MM3 A;  1WEP A;  3L11 A;  2Y1N A;  2ZET C;  2L7P A;  2LXH C;  1X4J A;  4LKA A;  4QQ4 A;  5LKT A;  2CT2 A;  2JMI A;  4MVT A;  2MKE A;  3T6R A;  3KV6 A;  2XOC A;  4YBT A;  4B86 C;  5D1M B;  1WGM A;  2FFW A;  4O62 A;  5H1U A;  4A49 A;  4BHW A;  1DCQ A;  3KNV A;  2LXP C;  3HCT A;  2K17 A;  2LGK A;  5SVY A;  2HDP A;  2ECG A;  3IHP A;  1Z2Q A;  5B8D A;  2YUC A;  4QF2 A;  2B0O E;  2MNZ A;  2LAU A;  4CA1 A;  3SOX A;  2QIC A;  4W4U A;  4AP4 A;  3H7H A;  5FB0 A;  1MM2 A;  2VPD A;  3KQI A;  4PPE A;  3I2D A;  2FUU A;  3N9N A;  4F52 B;  4YAD A;  1WEN A;  5LCW B;  2VP7 A;  4R7E A;  2XP0 A;  5C13 A;  2MD8 C;  2LN0 A;  2QIZ A;  3O70 A;  4YAT A;  3MDB C;  3GL6 A;  4YBS A;  4I7C A;  4N4F A;  2MA6 A;  1WEQ A;  2C2V S;  2LGV A;  5FB1 A;  3L1Z B;  4R2Y A;  3ZVZ B;  2EXU A;  2MNY A;  2UZG A;  2ECW A;  2L75 A;  2ECV A;  3LRQ A;  3PHD A;  2ECI A;  4YAX A;  1RMD A;  2KRE A;  1LDK C;  4H9D A;  2AN6 A;  2YQL A;  3LQH A;  2KWK A;  1V87 A;  5H1V A;  1CHC A;  2YU4 A;  4I7B A;  5SVI A;  4A4B A;  2HYE D;  2VPG A;  2EA6 A;  2CKL B;  2XOZ A;  2F42 A;  4AVX A;  2KR4 A;  2CSV A;  3LVQ E;  2G6Q A;  1VFY A;  4B7Y C;  4UP5 A;  5G05 B;  1X4I A;  2KKX A;  3PUR A;  2BAY A;  3O35 A;  1Z6U A;  4BBQ A;  2VJE A;  2MIQ A;  4ZUX U;  2MD7 B;  2YQM A;  2I50 A;  4LLB A;  3SHB A;  3U5O A;  4A0C D;  3GV4 A;  2ECN A;  3Q1D A;  5DIN A;  2KWO A;  2ECT A;  2M85 A;  3LDY A;  5TDW A;  4C9Z A;  3C6W A;  5D1L B;  3QZV A;  2FD4 A;  3HTK C;  2KWJ A;  2YYR A;  5KH3 A;  5C11 A;  4ZQL A;  3O33 A;  3N9L A;  4WA6 A;  3MHS A;  4YAB A;  4I7D A;  3FAN A;  2LRI C;  2MUM A;  3ZPV 1;  3M63 A;  1LDJ B;  2VPB A;  5G0F A;  1N87 A;  2LGL A;  4LJN A;  2H0D A;  2G45 A;  3NG2 A;  2Y1M A;  3N9O A;  5AIU A;  5LKU A;  2PUY A;  1FBV A;  3O34 A;  5KH7 A;  5B79 A;  3SUB A;  3RPG C;  4AYC B;  4WZ3 B;  3LJU X;  2MA5 A;  3ASL A;  3O36 A;  3DDT A;  5SVI B;  1FP0 A;  5EYA F;  2VPE A;  3HCS A;  3LVR E;  4WZ2 A;  5B77 A;  5TBN A;  1JOC A;  4LAD B;  5G04 B;  4PTB A;  4L58 A;  3SOU A;  2YW8 A;  3N9Q A;  2KIZ A;  1WES A;  1WIM A;  1XWH A;  2YRE A;  4GNF A;  4AYC A;  1JM7 A;  4NN2 A;  3RTR B;  2JRJ A;  2M13 A;  2L5U A;  2Y43 A;  3N9M A;  5AIT A;  3RPG B;  3PLW A;  2KKY A;  2VJE B;  4IC3 A;  1K2F A;  4UI9 B;  2DJA A;  2KU3 A;  2YSM A;  4V3K C;  5KH9 A;  3MHH A;  2L43 A;  4F1P A;  3DPL R;  5FEY A;  2P57 A;  2CRR A;  2KGI A;  2G43 A;  1WE9 A;  3DQV R;  4GND A;  2JUN A;  4FJC A;  1MBM A;  3U5P A;  2ECJ A; 
#chains in the Genus database with same CATH homology
 2MKE A;  3JUE A;  2CSV A;  3T9K A;  2EXU A;  3LVQ E;  5SVX A;  2OWA A;  4F1P A;  4Z0O A;  2XOC A;  4Z0R A;  2CRW A;  3H7H A;  2EGM A;  2E61 A;  4O62 A;  2FFW A;  2IQJ A;  3SUB A;  3KDE C;  2P57 A;  3LJU X;  3FJU B;  2XP0 A;  3E2D A;  3Q1D A;  2YRE A;  4OGE A;  2CRR A;  3M7K A;  4H9D A;  1DCQ A;  2M13 A;  4OGC A;  5SVY A;  2JM3 A;  3DDT A;  2CON A;  3LDY A;  2KKX A;  2YVR A;  3FM8 C;  3FEH A;  5SVI B;  2XOY A;  3O47 A;  5SVI A;  3PLW A;  2KKY A;  3MDB C;  2JUN A;  2L7P A;  3LVR E;  4QQ4 A;  2B0O E;  2DJA A;  2FD4 A;  5K3Q A;  2D8U A;  2LAU A;  2XOZ A;  3DWD A;  2RR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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