2CSVA

Solution structure of the zf-b_box type2 domain of human tripartite motif protein trim29 isoform alpha
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
GSSGSSGQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Solution structure of the zf-B_box type2 domain of human tripartite motif protein TRIM29 isoform alpha
rcsb
molecule keywords Tripartite motif protein 29
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2csvA00
2D8UA 2DJAA 5K3QA 2CSVA 2JUNA 2EGMA 2YVRA 3DDTA 3Q1DA
chains in the Genus database with same CATH superfamily
2XEUA 1JM7A 4YAXA 2QICA 3DPLR 4UI9B 2EGPA 4LLBA 3O33A 5B75A 3O36A 4GNDA 5TDRA 2VNFA 3LQHA 1WEWA 5TABA 1Z6UA 1DVPA 2VJEA 1WEPA 3MHSA 2YW8A 2ECNA 2C2LA 3FAOA 4N4FA 2CSYA 3HTKC 2XB1A 3PURA 5TDWA 1MM3A 5D1MB 3ZTGA 3LVRE 4L7XA 3PLWA 2K16A 2MA6A 4YATA 2NAAA 4AYCA 2RSDA 1T1HA 5C11A 2YSJA 2YHNA 3N9QA 1JM7B 4YBTA 4Z0OA 5B77A 4GNFA 4YC9A 1Z60A 2F42A 3T9KA 2LGLA 4WZ3B 2FUIA 5H1TA 3M63A 2CKLA 2QIZA 3V43A 2KU3A 2CRWA 1WGMA 5G05B 2D8UA 4FK5A 3Q1DA 5JG6A 5TRBA 2KE1A 3U5NA 2LRIC 4GB0A 4PTBA 4GNEA 2VJFB 4S3OC 1CHCA 2XOZA 4A4BA 2F6NA 2CSZA 3PHDA 4AYCB 4LK9A 2KIZA 2YT5A 5TBNA 4CA1A 1WILA 4YBMA 2FUUA 2L5UA 3QZVA 4YADA 1DCQA 4FIPA 3N9OA 2E61A 3MHHA 2YURA 4WZ2A 1VFYA 3LQJA 1HYIA 2VPEA 3NG2A 2FSAA 3ZPV1 2DJAA 2CT2A 4O64A 2AN6A 3O7AA 5SVXA 3KDEC 4GNGA 4B7YC 2LGVA 2B0OE 2LGKA 3KQIA 4O62A 4FO9A 1WEOA 4XI1A 5J3XA 1WE9A 2FD4A 2IQJA 2VPGA 3SOUA 2L80A 2CRRA 2HYED 5B78A 2ECGA 3O34A 3IHPA 3N9NA 5I3LA 5EYAF 5LKUA 3SOXA 2MA5A 3H7HA 2YUCA 3FEHA 2ZETC 2JRJA 2JMIA 2JMDA 3LJUX 3ZVYA 3L1XA 2M1RA 1WEQA 2OWAA 4IC3A 4Q6FA 5AIUA 2PNXA 1VYXA 4UP5A 2ECIA 4AVXA 3C5KA 2Y1MA 2YREA 2QJ0A 3KV5A 1XWHA 5D1LB 5H1VA 2VJFA 4R2YA 5G04B 3HCSA 2RR4A 5DINA 2RI7A 4I7BA 1BORA 2Y1NA 1G25A 1U6GB 4WA6A 3RPGC 5SVYA 4A49A 1X4IA 1WEVA 2LXPC 4S3OB 2MIQA 4N3WA 1WESA 3SHBA 4H9DA 2KWOA 2LV9A 3ZYQA 2I50A 4OGEA 4F1PA 1WEUA 2M6MA 2YQLA 1E4UA 5FERA 2G6QA 2JM3A 4C9ZA 3L1ZB 2MKEA 1X4UA 5SVIB 2ECWA 3LVQE 3SOWA 2KKYA 3FL2A 5AITA 2LQ6A 2KYUA 3ZPVE 5LKZA 4UP0A 4I7CA 2E6RA 3O47A 5DKAA 1MM2A 3RTRB 2C2VS 3T7LA 2YQMA 4F52B 2K4DA 3GL6A 2YHOA 2EA6A 2CSVA 3FJUB 3MDBC 1WIMA 3HCTA 5LKTA 1ZBDB 3E2DA 3FANA 2E6SA 5FEYA 1N87A 1LDKC 2M85A 2L75A 3ASLA 4I7DA 2G45A 4L58A 2ECJA 3ZVZB 3DWDA 4LJNA 2K17A 3DQVR 4MSXA 3M62A 5FB0A 1FBVA 2KWNA 2YVRA 2H0DB 2D8SA 3O35A 1VD4A 4LADB 3N9LA 3T6RA 2HDPA 3RPGB 3L11A 2K1JA 3VK6A 2JMJA 3JUEA 2LN0A 3EB6A 3N9PA 2KFTA 1HYJA 2XOYA 5H9MA 1MBMA 5SVIA 3I2DA 5LCWB 3U5PA 2LDRA 1WENA 2KWKA 4TKPB 2M13A 5D1KB 5KH9A 2IDAA 1X4JA 2MT5A 2FFWA 2XOCA 4QQ4A 3GV4A 3HCUA 2L7PA 2MUMA 2UZGA 2YU4A 5KH3A 3SUBA 2YYRA 3DDTA 3M99A 2F6JA 5B76A 5B8DA 4QF2A 3EB5A 2P57A 2ECTA 3FM8C 2KR4A 4WZ0A 4IC2A 3M7KA 2KGGA 4OGCA 2EGMA 5H1UA 3LQIA 4ZDTA 2VJEB 4PPEA 4ZUXU 2KKXA 2DSMA 5B79A 5FB1A 3C6WA 4MVTA 1WEMA 4A0CD 2JUNA 2VP7A 3LDYA 4YBSA 4BHWA 4B86C 1Z2QA 2MNYA 2BAYA 2H0DA 5C13A 2Y43A 2VPDA 4V3KC 2KREA 4R8PK 2YSMA 4Z0RA 2DX8A 4FJCA 1RMDA 2MD7B 1V87A 4P5OB 2G43A 2CKLB 3O37A 3O70A 4V3LC 2PUYA 3LRQA 4AUQB 2L43A 2VPBA 3N9MA 3ZNIA 2MD8C 5LKXA 1K2FA 2LGGA 2M3HA 4NN2A 4LKAA 4BBQA 3PUQA 1WFKA 4X3GA 4QF3A 5K3QA 1WEEA 4R7EA 4AP4A 3KV6A 2EODA 1IYMA 1LDJB 2XP0A 2KGIA 1FP0A 2OXQC 2L0BA 2EXUA 2ECVA 4ZQLA 5KH7A 2LXHC 4YABA 3U5OA 2KWJA 3U5MA 1JOCA 2MNZA 4W4UA 2CONA 5G0FA 2LAUA 3KNVA 1F62A 4A4CA 4CCGX
chains in the Genus database with same CATH topology
3JUEA 2XOCA 4QQ4A 2DJAA 2KKYA 2L7PA 2CSVA 4H9DA 2CRWA 2CRRA 3FJUB 3DWDA 2KKXA 2YREA 3MDBC 3LVQE 5K3QA 2D8UA 3LVRE 4Z0RA 2XOYA 3PLWA 5SVIA 5SVXA 3KDEC 1DCQA 2XP0A 2YVRA 4OGEA 3SUBA 4F1PA 3DDTA 3E2DA 2EXUA 3H7HA 3Q1DA 2M13A 2B0OE 3FEHA 4O62A 2P57A 4Z0OA 2JUNA 3O47A 2RR4A 3FM8C 2JM3A 2E61A 3LDYA 3LJUX 2MKEA 3T9KA 3M7KA 2CONA 5SVYA 2FD4A 5SVIB 2FFWA 2LAUA 4OGCA 2EGMA 2IQJA 2OWAA 2XOZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8U A;  2DJA A;  5K3Q A;  2CSV A;  2JUN A;  2EGM A;  2YVR A;  3DDT A;  3Q1D A; 
#chains in the Genus database with same CATH topology
 2XEU A;  1JM7 A;  4YAX A;  2QIC A;  3DPL R;  4UI9 B;  2EGP A;  4LLB A;  3O33 A;  5B75 A;  3O36 A;  4GND A;  5TDR A;  2VNF A;  3LQH A;  1WEW A;  5TAB A;  1Z6U A;  1DVP A;  2VJE A;  1WEP A;  3MHS A;  2YW8 A;  2ECN A;  2C2L A;  3FAO A;  4N4F A;  2CSY A;  3HTK C;  2XB1 A;  3PUR A;  5TDW A;  1MM3 A;  5D1M B;  3ZTG A;  3LVR E;  4L7X A;  3PLW A;  2K16 A;  2MA6 A;  4YAT A;  2NAA A;  4AYC A;  2RSD A;  1T1H A;  5C11 A;  2YSJ A;  2YHN A;  3N9Q A;  1JM7 B;  4YBT A;  4Z0O A;  5B77 A;  4GNF A;  4YC9 A;  1Z60 A;  2F42 A;  3T9K A;  2LGL A;  4WZ3 B;  2FUI A;  5H1T A;  3M63 A;  2CKL A;  2QIZ A;  3V43 A;  2KU3 A;  2CRW A;  1WGM A;  5G05 B;  2D8U A;  4FK5 A;  3Q1D A;  5JG6 A;  5TRB A;  2KE1 A;  3U5N A;  2LRI C;  4GB0 A;  4PTB A;  4GNE A;  2VJF B;  4S3O C;  1CHC A;  2XOZ A;  4A4B A;  2F6N A;  2CSZ A;  3PHD A;  4AYC B;  4LK9 A;  2KIZ A;  2YT5 A;  5TBN A;  4CA1 A;  1WIL A;  4YBM A;  2FUU A;  2L5U A;  3QZV A;  4YAD A;  1DCQ A;  4FIP A;  3N9O A;  2E61 A;  3MHH A;  2YUR A;  4WZ2 A;  1VFY A;  3LQJ A;  1HYI A;  2VPE A;  3NG2 A;  2FSA A;  3ZPV 1;  2DJA A;  2CT2 A;  4O64 A;  2AN6 A;  3O7A A;  5SVX A;  3KDE C;  4GNG A;  4B7Y C;  2LGV A;  2B0O E;  2LGK A;  3KQI A;  4O62 A;  4FO9 A;  1WEO A;  4XI1 A;  5J3X A;  1WE9 A;  2FD4 A;  2IQJ A;  2VPG A;  3SOU A;  2L80 A;  2CRR A;  2HYE D;  5B78 A;  2ECG A;  3O34 A;  3IHP A;  3N9N A;  5I3L A;  5EYA F;  5LKU A;  3SOX A;  2MA5 A;  3H7H A;  2YUC A;  3FEH A;  2ZET C;  2JRJ A;  2JMI A;  2JMD A;  3LJU X;  3ZVY A;  3L1X A;  2M1R A;  1WEQ A;  2OWA A;  4IC3 A;  4Q6F A;  5AIU A;  2PNX A;  1VYX A;  4UP5 A;  2ECI A;  4AVX A;  3C5K A;  2Y1M A;  2YRE A;  2QJ0 A;  3KV5 A;  1XWH A;  5D1L B;  5H1V A;  2VJF A;  4R2Y A;  5G04 B;  3HCS A;  2RR4 A;  5DIN A;  2RI7 A;  4I7B A;  1BOR A;  2Y1N A;  1G25 A;  1U6G B;  4WA6 A;  3RPG C;  5SVY A;  4A49 A;  1X4I A;  1WEV A;  2LXP C;  4S3O B;  2MIQ A;  4N3W A;  1WES A;  3SHB A;  4H9D A;  2KWO A;  2LV9 A;  3ZYQ A;  2I50 A;  4OGE A;  4F1P A;  1WEU A;  2M6M A;  2YQL A;  1E4U A;  5FER A;  2G6Q A;  2JM3 A;  4C9Z A;  3L1Z B;  2MKE A;  1X4U A;  5SVI B;  2ECW A;  3LVQ E;  3SOW A;  2KKY A;  3FL2 A;  5AIT A;  2LQ6 A;  2KYU A;  3ZPV E;  5LKZ A;  4UP0 A;  4I7C A;  2E6R A;  3O47 A;  5DKA A;  1MM2 A;  3RTR B;  2C2V S;  3T7L A;  2YQM A;  4F52 B;  2K4D A;  3GL6 A;  2YHO A;  2EA6 A;  2CSV A;  3FJU B;  3MDB C;  1WIM A;  3HCT A;  5LKT A;  1ZBD B;  3E2D A;  3FAN A;  2E6S A;  5FEY A;  1N87 A;  1LDK C;  2M85 A;  2L75 A;  3ASL A;  4I7D A;  2G45 A;  4L58 A;  2ECJ A;  3ZVZ B;  3DWD A;  4LJN A;  2K17 A;  3DQV R;  4MSX A;  3M62 A;  5FB0 A;  1FBV A;  2KWN A;  2YVR A;  2H0D B;  2D8S A;  3O35 A;  1VD4 A;  4LAD B;  3N9L A;  3T6R A;  2HDP A;  3RPG B;  3L11 A;  2K1J A;  3VK6 A;  2JMJ A;  3JUE A;  2LN0 A;  3EB6 A;  3N9P A;  2KFT A;  1HYJ A;  2XOY A;  5H9M A;  1MBM A;  5SVI A;  3I2D A;  5LCW B;  3U5P A;  2LDR A;  1WEN A;  2KWK A;  4TKP B;  2M13 A;  5D1K B;  5KH9 A;  2IDA A;  1X4J A;  2MT5 A;  2FFW A;  2XOC A;  4QQ4 A;  3GV4 A;  3HCU A;  2L7P A;  2MUM A;  2UZG A;  2YU4 A;  5KH3 A;  3SUB A;  2YYR A;  3DDT A;  3M99 A;  2F6J A;  5B76 A;  5B8D A;  4QF2 A;  3EB5 A;  2P57 A;  2ECT A;  3FM8 C;  2KR4 A;  4WZ0 A;  4IC2 A;  3M7K A;  2KGG A;  4OGC A;  2EGM A;  5H1U A;  3LQI A;  4ZDT A;  2VJE B;  4PPE A;  4ZUX U;  2KKX A;  2DSM A;  5B79 A;  5FB1 A;  3C6W A;  4MVT A;  1WEM A;  4A0C D;  2JUN A;  2VP7 A;  3LDY A;  4YBS A;  4BHW A;  4B86 C;  1Z2Q A;  2MNY A;  2BAY A;  2H0D A;  5C13 A;  2Y43 A;  2VPD A;  4V3K C;  2KRE A;  4R8P K;  2YSM A;  4Z0R A;  2DX8 A;  4FJC A;  1RMD A;  2MD7 B;  1V87 A;  4P5O B;  2G43 A;  2CKL B;  3O37 A;  3O70 A;  4V3L C;  2PUY A;  3LRQ A;  4AUQ B;  2L43 A;  2VPB A;  3N9M A;  3ZNI A;  2MD8 C;  5LKX A;  1K2F A;  2LGG A;  2M3H A;  4NN2 A;  4LKA A;  4BBQ A;  3PUQ A;  1WFK A;  4X3G A;  4QF3 A;  5K3Q A;  1WEE A;  4R7E A;  4AP4 A;  3KV6 A;  2EOD A;  1IYM A;  1LDJ B;  2XP0 A;  2KGI A;  1FP0 A;  2OXQ C;  2L0B A;  2EXU A;  2ECV A;  4ZQL A;  5KH7 A;  2LXH C;  4YAB A;  3U5O A;  2KWJ A;  3U5M A;  1JOC A;  2MNZ A;  4W4U A;  2CON A;  5G0F A;  2LAU A;  3KNV A;  1F62 A;  4A4C A;  4CCG X; 
#chains in the Genus database with same CATH homology
 3JUE A;  2XOC A;  4QQ4 A;  2DJA A;  2KKY A;  2L7P A;  2CSV A;  4H9D A;  2CRW A;  2CRR A;  3FJU B;  3DWD A;  2KKX A;  2YRE A;  3MDB C;  3LVQ E;  5K3Q A;  2D8U A;  3LVR E;  4Z0R A;  2XOY A;  3PLW A;  5SVI A;  5SVX A;  3KDE C;  1DCQ A;  2XP0 A;  2YVR A;  4OGE A;  3SUB A;  4F1P A;  3DDT A;  3E2D A;  2EXU A;  3H7H A;  3Q1D A;  2M13 A;  2B0O E;  3FEH A;  4O62 A;  2P57 A;  4Z0O A;  2JUN A;  3O47 A;  2RR4 A;  3FM8 C;  2JM3 A;  2E61 A;  3LDY A;  3LJU X;  2MKE A;  3T9K A;  3M7K A;  2CON A;  5SVY A;  2FD4 A;  5SVI B;  2FFW A;  2LAU A;  4OGC A;  2EGM A;  2IQJ A;  2OWA A;  2XOZ A; 
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similar chains in the pdb database (?% sequence similarity)

 
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