2EGMA

Solution structure of the zf-b_box domain from human tripartite motif protein 41
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
57
structure length
57
Chain Sequence
GSSGSSGTPGRGSRVTDQGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the zf-B_box domain from human Tripartite motif protein 41
rcsb
molecule tags Transcription/metal binding protein
source organism Homo sapiens
molecule keywords Tripartite motif-containing protein 41
total genus 6
structure length 57
sequence length 57
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2egmA00
2D8UA 2CSVA 2YVRA 2EGMA 5K3QA 2DJAA 3DDTA 3Q1DA 2JUNA
chains in the Genus database with same CATH superfamily
4XI1A 1LDKC 5SVYA 2MD7B 4IC3A 4YBMA 3L1XA 2YQLA 2ECIA 2KU3A 2ECWA 4GNDA 2KIZA 2CRRA 4FIPA 3EB6A 2YHNA 2K17A 2LDRA 2C2VS 1WEMA 2RI7A 5LKUA 3FAOA 4FO9A 3PHDA 4PPEA 1MM3A 2CT2A 2F42A 4X3GA 1F62A 3Q1DA 5LKZA 4MVTA 3ZNIA 5FERA 3LQJA 2LGKA 4CCGX 4FK5A 1WGMA 1WEPA 5LCWB 2FUIA 1WEWA 4YBSA 5D1MB 2LGVA 2AN6A 2CONA 3LVQE 2KWOA 2VPDA 4V3LC 3LQHA 5B77A 3LDYA 3ASLA 4GNGA 3KNVA 3V43A 3NG2A 2K1JA 2OXQC 3MDBC 4WZ2A 2FFWA 2MNYA 2EXUA 1Z6UA 2XOCA 1E4UA 3M62A 1X4IA 2B0OE 1FP0A 2ECJA 2EGMA 4YABA 1VYXA 3M7KA 2YHOA 4LKAA 3GV4A 5B79A 2YUCA 1X4UA 3O34A 2LAUA 4MSXA 2YYRA 2E6RA 2LGGA 2MKEA 2YT5A 2F6NA 4LK9A 3DWDA 4WZ3B 2RR4A 1WFKA 2JMIA 5G04B 2NAAA 5DINA 2PUYA 4R7EA 4QF2A 3QZVA 5H1VA 4LLBA 1IYMA 2G43A 3SUBA 1WE9A 3KDEC 3T6RA 2FUUA 2KKYA 2VPBA 2I50A 1Z2QA 2E6SA 1K2FA 3O33A 2E61A 2L7PA 2QICA 3SOUA 3HCSA 1JOCA 4OGCA 2KREA 5B8DA 4A4BA 3O35A 2HDPA 3LQIA 2IDAA 4PTBA 3O37A 2VJFA 3ZYQA 4N4FA 4B7YC 4QF3A 3N9PA 4AP4A 3N9MA 3O7AA 4N3WA 5TDWA 4BBQA 5B75A 4WA6A 4I7BA 2YURA 4ZDTA 2YW8A 2P57A 4ZQLA 3U5MA 2ECVA 4A4CA 3T9KA 4O64A 2KGGA 2VJFB 4L7XA 2LQ6A 2D8UA 3IHPA 2KR4A 3DQVR 2QIZA 4TKPB 2KFTA 5I3LA 3I2DA 5B78A 1T1HA 1WEVA 5JG6A 1DVPA 2IQJA 2H0DA 3LRQA 5FB0A 5C11A 2K4DA 2MA5A 3LVRE 3SOXA 1FBVA 1Z60A 2M3HA 2CSYA 3SHBA 2MT5A 2DX8A 2MNZA 2CSZA 1WENA 2D8SA 4GNFA 4B86C 1MM2A 4LJNA 1WESA 4C9ZA 2KGIA 3H7HA 4A49A 2M13A 3HCUA 3FL2A 1G25A 2H0DB 4V3KC 2JMDA 5TRBA 3L11A 4L58A 2JRJA 4R8PK 3KV5A 5KH7A 2KE1A 3ZPV1 5H1TA 2K16A 5LKXA 5LKTA 2CRWA 2DSMA 5D1LB 5TDRA 4R2YA 2CKLA 3ZVYA 1V87A 2LXPC 4AYCA 2MIQA 5FEYA 2LV9A 2L80A 3LJUX 3U5PA 1WEOA 1ZBDB 3JUEA 2VNFA 1JM7A 1MBMA 4BHWA 3KQIA 3L1ZB 3PLWA 4O62A 2YSJA 4IC2A 5H9MA 5H1UA 2KWNA 2QJ0A 3N9OA 4S3OB 2Y1MA 2KYUA 2LN0A 5D1KB 2Y1NA 4Z0OA 2CKLB 5K3QA 1WIMA 4AYCB 1RMDA 1VD4A 3M63A 4CA1A 3M99A 4AUQB 2VJEA 3U5OA 1JM7B 2M6MA 2G45A 5KH9A 2LXHC 3MHHA 2MUMA 4GNEA 3DPLR 4LADB 3E2DA 5G05B 5B76A 5DKAA 2KWJA 2L0BA 4A0CD 3N9LA 4H9DA 2RSDA 2KWKA 5C13A 2M85A 2ZETC 1DCQA 1BORA 2XOYA 2ECTA 4YAXA 3FEHA 4S3OC 4ZUXU 5FB1A 4P5OB 5TBNA 2VJEB 3KV6A 2UZGA 2M1RA 1U6GB 4F1PA 4YBTA 4Z0RA 2XOZA 2JMJA 4YC9A 2MA6A 2YQMA 3FANA 3HCTA 3FJUB 2F6JA 2L43A 4I7CA 3RPGB 3PURA 2YREA 1HYJA 5AITA 3T7LA 2G6QA 2Y43A 4F52B 1VFYA 3N9NA 2EODA 1X4JA 4I7DA 3O36A 4QQ4A 5SVIA 2FSAA 2CSVA 4AVXA 4UP5A 2XB1A 4GB0A 1WEQA 4YADA 3C6WA 5J3XA 1XWHA 2YU4A 4UI9B 2ECGA 2YSMA 5KH3A 3U5NA 1WEEA 5EYAF 3SOWA 3RPGC 2DJAA 2EA6A 1HYIA 2PNXA 2HYED 2L5UA 2LGLA 2VP7A 3EB5A 1WEUA 2KKXA 4YATA 5SVIB 4W4UA 3N9QA 3FM8C 3ZPVE 2YVRA 2FD4A 4UP0A 5TABA 2ECNA 1LDJB 2L75A 4NN2A 2LRIC 3C5KA 2JUNA 3ZVZB 3HTKC 5AIUA 4Q6FA 4WZ0A 2MD8C 3PUQA 3ZTGA 2VPEA 3VK6A 3O47A 1WILA 2BAYA 4FJCA 1N87A 5G0FA 2JM3A 2C2LA 3DDTA 2XP0A 2XEUA 3GL6A 1CHCA 2OWAA 3O70A 5SVXA 2VPGA 2EGPA 3RTRB 4OGEA 3MHSA
chains in the Genus database with same CATH topology
2L7PA 5SVYA 4OGCA 2CRWA 2CONA 3E2DA 3LVQE 2DJAA 4F1PA 4Z0RA 3Q1DA 2XOZA 4QQ4A 5SVIA 4H9DA 3LDYA 3O47A 2CSVA 4Z0OA 5K3QA 3H7HA 3FJUB 2KKXA 2LAUA 2P57A 5SVIB 1DCQA 3SUBA 2IQJA 3LJUX 2M13A 2XOYA 3MDBC 3FM8C 2FFWA 4O62A 2CRRA 2YVRA 2MKEA 2EXUA 2FD4A 2JM3A 2XOCA 3JUEA 3KDEC 2KKYA 2XP0A 3DDTA 3FEHA 2YREA 3LVRE 3T9KA 3DWDA 2OWAA 2B0OE 2D8UA 5SVXA 2RR4A 2EGMA 4OGEA 2E61A 3PLWA 2JUNA 3M7KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8U A;  2CSV A;  2YVR A;  2EGM A;  5K3Q A;  2DJA A;  3DDT A;  3Q1D A;  2JUN A; 
#chains in the Genus database with same CATH topology
 4XI1 A;  1LDK C;  5SVY A;  2MD7 B;  4IC3 A;  4YBM A;  3L1X A;  2YQL A;  2ECI A;  2KU3 A;  2ECW A;  4GND A;  2KIZ A;  2CRR A;  4FIP A;  3EB6 A;  2YHN A;  2K17 A;  2LDR A;  2C2V S;  1WEM A;  2RI7 A;  5LKU A;  3FAO A;  4FO9 A;  3PHD A;  4PPE A;  1MM3 A;  2CT2 A;  2F42 A;  4X3G A;  1F62 A;  3Q1D A;  5LKZ A;  4MVT A;  3ZNI A;  5FER A;  3LQJ A;  2LGK A;  4CCG X;  4FK5 A;  1WGM A;  1WEP A;  5LCW B;  2FUI A;  1WEW A;  4YBS A;  5D1M B;  2LGV A;  2AN6 A;  2CON A;  3LVQ E;  2KWO A;  2VPD A;  4V3L C;  3LQH A;  5B77 A;  3LDY A;  3ASL A;  4GNG A;  3KNV A;  3V43 A;  3NG2 A;  2K1J A;  2OXQ C;  3MDB C;  4WZ2 A;  2FFW A;  2MNY A;  2EXU A;  1Z6U A;  2XOC A;  1E4U A;  3M62 A;  1X4I A;  2B0O E;  1FP0 A;  2ECJ A;  2EGM A;  4YAB A;  1VYX A;  3M7K A;  2YHO A;  4LKA A;  3GV4 A;  5B79 A;  2YUC A;  1X4U A;  3O34 A;  2LAU A;  4MSX A;  2YYR A;  2E6R A;  2LGG A;  2MKE A;  2YT5 A;  2F6N A;  4LK9 A;  3DWD A;  4WZ3 B;  2RR4 A;  1WFK A;  2JMI A;  5G04 B;  2NAA A;  5DIN A;  2PUY A;  4R7E A;  4QF2 A;  3QZV A;  5H1V A;  4LLB A;  1IYM A;  2G43 A;  3SUB A;  1WE9 A;  3KDE C;  3T6R A;  2FUU A;  2KKY A;  2VPB A;  2I50 A;  1Z2Q A;  2E6S A;  1K2F A;  3O33 A;  2E61 A;  2L7P A;  2QIC A;  3SOU A;  3HCS A;  1JOC A;  4OGC A;  2KRE A;  5B8D A;  4A4B A;  3O35 A;  2HDP A;  3LQI A;  2IDA A;  4PTB A;  3O37 A;  2VJF A;  3ZYQ A;  4N4F A;  4B7Y C;  4QF3 A;  3N9P A;  4AP4 A;  3N9M A;  3O7A A;  4N3W A;  5TDW A;  4BBQ A;  5B75 A;  4WA6 A;  4I7B A;  2YUR A;  4ZDT A;  2YW8 A;  2P57 A;  4ZQL A;  3U5M A;  2ECV A;  4A4C A;  3T9K A;  4O64 A;  2KGG A;  2VJF B;  4L7X A;  2LQ6 A;  2D8U A;  3IHP A;  2KR4 A;  3DQV R;  2QIZ A;  4TKP B;  2KFT A;  5I3L A;  3I2D A;  5B78 A;  1T1H A;  1WEV A;  5JG6 A;  1DVP A;  2IQJ A;  2H0D A;  3LRQ A;  5FB0 A;  5C11 A;  2K4D A;  2MA5 A;  3LVR E;  3SOX A;  1FBV A;  1Z60 A;  2M3H A;  2CSY A;  3SHB A;  2MT5 A;  2DX8 A;  2MNZ A;  2CSZ A;  1WEN A;  2D8S A;  4GNF A;  4B86 C;  1MM2 A;  4LJN A;  1WES A;  4C9Z A;  2KGI A;  3H7H A;  4A49 A;  2M13 A;  3HCU A;  3FL2 A;  1G25 A;  2H0D B;  4V3K C;  2JMD A;  5TRB A;  3L11 A;  4L58 A;  2JRJ A;  4R8P K;  3KV5 A;  5KH7 A;  2KE1 A;  3ZPV 1;  5H1T A;  2K16 A;  5LKX A;  5LKT A;  2CRW A;  2DSM A;  5D1L B;  5TDR A;  4R2Y A;  2CKL A;  3ZVY A;  1V87 A;  2LXP C;  4AYC A;  2MIQ A;  5FEY A;  2LV9 A;  2L80 A;  3LJU X;  3U5P A;  1WEO A;  1ZBD B;  3JUE A;  2VNF A;  1JM7 A;  1MBM A;  4BHW A;  3KQI A;  3L1Z B;  3PLW A;  4O62 A;  2YSJ A;  4IC2 A;  5H9M A;  5H1U A;  2KWN A;  2QJ0 A;  3N9O A;  4S3O B;  2Y1M A;  2KYU A;  2LN0 A;  5D1K B;  2Y1N A;  4Z0O A;  2CKL B;  5K3Q A;  1WIM A;  4AYC B;  1RMD A;  1VD4 A;  3M63 A;  4CA1 A;  3M99 A;  4AUQ B;  2VJE A;  3U5O A;  1JM7 B;  2M6M A;  2G45 A;  5KH9 A;  2LXH C;  3MHH A;  2MUM A;  4GNE A;  3DPL R;  4LAD B;  3E2D A;  5G05 B;  5B76 A;  5DKA A;  2KWJ A;  2L0B A;  4A0C D;  3N9L A;  4H9D A;  2RSD A;  2KWK A;  5C13 A;  2M85 A;  2ZET C;  1DCQ A;  1BOR A;  2XOY A;  2ECT A;  4YAX A;  3FEH A;  4S3O C;  4ZUX U;  5FB1 A;  4P5O B;  5TBN A;  2VJE B;  3KV6 A;  2UZG A;  2M1R A;  1U6G B;  4F1P A;  4YBT A;  4Z0R A;  2XOZ A;  2JMJ A;  4YC9 A;  2MA6 A;  2YQM A;  3FAN A;  3HCT A;  3FJU B;  2F6J A;  2L43 A;  4I7C A;  3RPG B;  3PUR A;  2YRE A;  1HYJ A;  5AIT A;  3T7L A;  2G6Q A;  2Y43 A;  4F52 B;  1VFY A;  3N9N A;  2EOD A;  1X4J A;  4I7D A;  3O36 A;  4QQ4 A;  5SVI A;  2FSA A;  2CSV A;  4AVX A;  4UP5 A;  2XB1 A;  4GB0 A;  1WEQ A;  4YAD A;  3C6W A;  5J3X A;  1XWH A;  2YU4 A;  4UI9 B;  2ECG A;  2YSM A;  5KH3 A;  3U5N A;  1WEE A;  5EYA F;  3SOW A;  3RPG C;  2DJA A;  2EA6 A;  1HYI A;  2PNX A;  2HYE D;  2L5U A;  2LGL A;  2VP7 A;  3EB5 A;  1WEU A;  2KKX A;  4YAT A;  5SVI B;  4W4U A;  3N9Q A;  3FM8 C;  3ZPV E;  2YVR A;  2FD4 A;  4UP0 A;  5TAB A;  2ECN A;  1LDJ B;  2L75 A;  4NN2 A;  2LRI C;  3C5K A;  2JUN A;  3ZVZ B;  3HTK C;  5AIU A;  4Q6F A;  4WZ0 A;  2MD8 C;  3PUQ A;  3ZTG A;  2VPE A;  3VK6 A;  3O47 A;  1WIL A;  2BAY A;  4FJC A;  1N87 A;  5G0F A;  2JM3 A;  2C2L A;  3DDT A;  2XP0 A;  2XEU A;  3GL6 A;  1CHC A;  2OWA A;  3O70 A;  5SVX A;  2VPG A;  2EGP A;  3RTR B;  4OGE A;  3MHS A; 
#chains in the Genus database with same CATH homology
 2L7P A;  5SVY A;  4OGC A;  2CRW A;  2CON A;  3E2D A;  3LVQ E;  2DJA A;  4F1P A;  4Z0R A;  3Q1D A;  2XOZ A;  4QQ4 A;  5SVI A;  4H9D A;  3LDY A;  3O47 A;  2CSV A;  4Z0O A;  5K3Q A;  3H7H A;  3FJU B;  2KKX A;  2LAU A;  2P57 A;  5SVI B;  1DCQ A;  3SUB A;  2IQJ A;  3LJU X;  2M13 A;  2XOY A;  3MDB C;  3FM8 C;  2FFW A;  4O62 A;  2CRR A;  2YVR A;  2MKE A;  2EXU A;  2FD4 A;  2JM3 A;  2XOC A;  3JUE A;  3KDE C;  2KKY A;  2XP0 A;  3DDT A;  3FEH A;  2YRE A;  3LVR E;  3T9K A;  3DWD A;  2OWA A;  2B0O E;  2D8U A;  5SVX A;  2RR4 A;  2EGM A;  4OGE A;  2E61 A;  3PLW A;  2JUN A;  3M7K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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