2EGMA

Solution structure of the zf-b_box domain from human tripartite motif protein 41
Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
57
structure length
57
Chain Sequence
GSSGSSGTPGRGSRVTDQGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (3-5)S2 (26-32)TIV2 (16-19)S1 (20-21)TIV3 (21-24)TIV4 (22-25)S3 (37-40)AH1 (41-45)EMPTYS4 (54-56)TIV5 (32-35)TIV6 (33-36)TIV7 (46-49)TI2 (49-52)TI1 (47-50)Updating...
connected with : NaN
molecule tags Transcription/metal binding protein
source organism Homo sapiens
publication title Solution structure of the zf-B_box domain from human Tripartite motif protein 41
rcsb
molecule keywords Tripartite motif-containing protein 41
total genus 6
structure length 57
sequence length 57
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2egmA00
2CSVA 2EGMA 2YVRA 2DJAA 2D8UA 3Q1DA 3DDTA 5K3QA 2JUNA
chains in the Genus database with same CATH superfamily
2YU4A 2QICA 2CKLB 3LDYA 1MBMA 3FM8C 5D1LB 4LLBA 2YW8A 4LJNA 5H1TA 2C2VS 2YQLA 1FP0A 1G25A 5D1MB 2CT2A 4I7DA 3KQIA 3KV5A 4BBQA 1WEUA 4ZDTA 5K3QA 3L1ZB 3PUQA 3O7AA 3N9LA 1WIMA 4MVTA 2BAYA 4OGCA 3Q1DA 2ECTA 3QZVA 4YADA 2HDPA 3LQIA 3LRQA 3O36A 2VPEA 1VFYA 5KH3A 2CONA 5B8DA 5KH9A 3FEHA 3U5PA 2EGPA 2ECIA 2FUUA 2MD8C 4YC9A 2ECJA 5B76A 2YSMA 3N9MA 1WEVA 2PNXA 3M7KA 2KE1A 3N9PA 4H9DA 3N9OA 2M1RA 4QF2A 4CA1A 5AITA 4F1PA 2G43A 2YVRA 2KREA 2M85A 5DKAA 5TRBA 2KKYA 3HCTA 2MIQA 5D1KB 4WA6A 3L1XA 2FUIA 3LQJA 5FB0A 2VPGA 4W4UA 4Z0OA 2LGKA 3LQHA 4L58A 3NG2A 3JUEA 5FERA 4A0CD 1Z6UA 4ZUXU 1WEOA 1WEMA 2JMJA 2E6RA 2YT5A 4OGEA 2LRIC 3O33A 2Y1NA 2Y1MA 2CSZA 3M99A 5FB1A 2LXHC 3O34A 3SOXA 2VJFB 4YBMA 3O37A 4GNGA 2KWKA 2MD7B 3RPGB 2P57A 4YBSA 5H1VA 3PHDA 2VP7A 1ZBDB 3SOUA 5FEYA 3ZTGA 5TDWA 2MT5A 4I7BA 5SVYA 2E61A 3LVRE 3U5MA 5LCWB 2RSDA 1WILA 2VPDA 4N4FA 3MHSA 5EYAF 1WE9A 2B0OE 2KYUA 5TBNA 3FJUB 2KWOA 3DPLR 5JG6A 2C2LA 2IQJA 2UZGA 1WFKA 2FFWA 1VYXA 2VJEA 4R2YA 2L43A 4FK5A 2QIZA 3V43A 4WZ3B 2L5UA 4I7CA 2JUNA 4WZ0A 4A4CA 3MDBC 2L80A 2XEUA 2DJAA 2M6MA 3SOWA 3N9QA 4F52B 2K1JA 3L11A 2KWNA 3U5NA 1XWHA 4NN2A 2VJFA 4R7EA 4ZQLA 3KDEC 1JOCA 3ZNIA 1X4JA 3M63A 3DDTA 4YABA 2DSMA 2H0DA 3RTRB 1E4UA 3IHPA 2JMDA 2KR4A 2RR4A 2LAUA 1WENA 2L0BA 2ECWA 5LKUA 2KKXA 2G45A 5TDRA 5LKXA 4PTBA 2CRRA 1WEQA 2VJEB 3SUBA 4V3KC 2XOZA 3E2DA 1MM2A 2YHOA 4TKPB 2G6QA 5LKTA 2ECGA 4YBTA 2MNYA 1MM3A 4B7YC 5B75A 1BORA 2XOYA 3PURA 2RI7A 3FL2A 1Z2QA 2MA6A 2Y43A 4AYCB 4QF3A 2KIZA 1HYIA 3I2DA 2LGVA 2DX8A 2K16A 2KFTA 3PLWA 2LDRA 5C11A 4S3OC 3T7LA 5G0FA 4AVXA 1HYJA 4A49A 4YATA 3EB5A 4FIPA 2H0DB 4AUQB 2YREA 2JRJA 2MA5A 3O47A 4IC2A 3ZVYA 3LJUX 5SVXA 4N3WA 3ZVZB 2YHNA 2KGIA 2M3HA 2MKEA 1DCQA 3T9KA 3ZPVE 2VPBA 2KGGA 2F6NA 2LN0A 2OWAA 2YUCA 2EGMA 2D8SA 2YYRA 2CSVA 2XOCA 5AIUA 2MNZA 2JMIA 1LDKC 3H7HA 2OXQC 4Z0RA 4S3OB 1Z60A 1JM7B 3M62A 2QJ0A 1FBVA 1LDJB 1CHCA 5B78A 1WGMA 3HCUA 3FANA 2NAAA 5LKZA 2D8UA 2M13A 2ZETC 3MHHA 2FD4A 4AYCA 1RMDA 4R8PK 2JM3A 2XB1A 3HCSA 5B79A 1VD4A 5KH7A 4CCGX 5B77A 4AP4A 2LV9A 4FO9A 2MUMA 4A4BA 4LK9A 2E6SA 5I3LA 1WEEA 1X4UA 5J3XA 2L7PA 4LKAA 1WEWA 3C6WA 3VK6A 4PPEA 5H9MA 4Q6FA 2EODA 2F42A 1IYMA 4GNEA 5SVIA 1WEPA 1DVPA 2LQ6A 5TABA 2ECVA 4UP0A 2YURA 2LXPC 4O64A 2YQMA 2ECNA 2K4DA 5DINA 2CSYA 2F6JA 4BHWA 4GNDA 3DQVR 1T1HA 1F62A 3ASLA 3RPGC 5C13A 3KV6A 4YAXA 2LGGA 1JM7A 3EB6A 1N87A 2L75A 4GNFA 3T6RA 2HYED 3HTKC 2CKLA 3C5KA 4UP5A 4P5OB 2EXUA 2EA6A 4V3LC 3ZPV1 5G05B 2CRWA 2LGLA 2YSJA 4WZ2A 2I50A 3GL6A 3O70A 3KNVA 1U6GB 3FAOA 1WESA 2VNFA 5H1UA 2AN6A 4GB0A 5SVIB 3ZYQA 1K2FA 4C9ZA 2KU3A 1V87A 2PUYA 4FJCA 2KWJA 3N9NA 4LADB 5G04B 4O62A 3DWDA 2K17A 2IDAA 4UI9B 3SHBA 4B86C 4L7XA 3O35A 4MSXA 4QQ4A 4X3GA 3LVQE 1X4IA 3U5OA 3GV4A 4IC3A 2FSAA 4XI1A 2XP0A
chains in the Genus database with same CATH topology
2EGMA 2EXUA 2DJAA 2P57A 4OGCA 2D8UA 3FJUB 3Q1DA 2M13A 3LDYA 5SVIA 2FD4A 3FM8C 2CSVA 2RR4A 2CRWA 2LAUA 2XOCA 2IQJA 2XOYA 2JM3A 3MDBC 4Z0OA 2FFWA 3M7KA 4QQ4A 2YREA 3LVQE 2CONA 3O47A 3JUEA 3LJUX 2KKXA 4H9DA 3H7HA 5SVYA 5SVIB 2E61A 5SVXA 3LVRE 3FEHA 5K3QA 3KDEC 2JUNA 2MKEA 4Z0RA 1DCQA 3T9KA 4OGEA 2CRRA 4F1PA 2YVRA 2L7PA 3SUBA 3E2DA 2XOZA 3PLWA 3DDTA 2OWAA 2KKYA 4O62A 2XP0A 3DWDA 2B0OE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CSV A;  2EGM A;  2YVR A;  2DJA A;  2D8U A;  3Q1D A;  3DDT A;  5K3Q A;  2JUN A; 
#chains in the Genus database with same CATH topology
 2YU4 A;  2QIC A;  2CKL B;  3LDY A;  1MBM A;  3FM8 C;  5D1L B;  4LLB A;  2YW8 A;  4LJN A;  5H1T A;  2C2V S;  2YQL A;  1FP0 A;  1G25 A;  5D1M B;  2CT2 A;  4I7D A;  3KQI A;  3KV5 A;  4BBQ A;  1WEU A;  4ZDT A;  5K3Q A;  3L1Z B;  3PUQ A;  3O7A A;  3N9L A;  1WIM A;  4MVT A;  2BAY A;  4OGC A;  3Q1D A;  2ECT A;  3QZV A;  4YAD A;  2HDP A;  3LQI A;  3LRQ A;  3O36 A;  2VPE A;  1VFY A;  5KH3 A;  2CON A;  5B8D A;  5KH9 A;  3FEH A;  3U5P A;  2EGP A;  2ECI A;  2FUU A;  2MD8 C;  4YC9 A;  2ECJ A;  5B76 A;  2YSM A;  3N9M A;  1WEV A;  2PNX A;  3M7K A;  2KE1 A;  3N9P A;  4H9D A;  3N9O A;  2M1R A;  4QF2 A;  4CA1 A;  5AIT A;  4F1P A;  2G43 A;  2YVR A;  2KRE A;  2M85 A;  5DKA A;  5TRB A;  2KKY A;  3HCT A;  2MIQ A;  5D1K B;  4WA6 A;  3L1X A;  2FUI A;  3LQJ A;  5FB0 A;  2VPG A;  4W4U A;  4Z0O A;  2LGK A;  3LQH A;  4L58 A;  3NG2 A;  3JUE A;  5FER A;  4A0C D;  1Z6U A;  4ZUX U;  1WEO A;  1WEM A;  2JMJ A;  2E6R A;  2YT5 A;  4OGE A;  2LRI C;  3O33 A;  2Y1N A;  2Y1M A;  2CSZ A;  3M99 A;  5FB1 A;  2LXH C;  3O34 A;  3SOX A;  2VJF B;  4YBM A;  3O37 A;  4GNG A;  2KWK A;  2MD7 B;  3RPG B;  2P57 A;  4YBS A;  5H1V A;  3PHD A;  2VP7 A;  1ZBD B;  3SOU A;  5FEY A;  3ZTG A;  5TDW A;  2MT5 A;  4I7B A;  5SVY A;  2E61 A;  3LVR E;  3U5M A;  5LCW B;  2RSD A;  1WIL A;  2VPD A;  4N4F A;  3MHS A;  5EYA F;  1WE9 A;  2B0O E;  2KYU A;  5TBN A;  3FJU B;  2KWO A;  3DPL R;  5JG6 A;  2C2L A;  2IQJ A;  2UZG A;  1WFK A;  2FFW A;  1VYX A;  2VJE A;  4R2Y A;  2L43 A;  4FK5 A;  2QIZ A;  3V43 A;  4WZ3 B;  2L5U A;  4I7C A;  2JUN A;  4WZ0 A;  4A4C A;  3MDB C;  2L80 A;  2XEU A;  2DJA A;  2M6M A;  3SOW A;  3N9Q A;  4F52 B;  2K1J A;  3L11 A;  2KWN A;  3U5N A;  1XWH A;  4NN2 A;  2VJF A;  4R7E A;  4ZQL A;  3KDE C;  1JOC A;  3ZNI A;  1X4J A;  3M63 A;  3DDT A;  4YAB A;  2DSM A;  2H0D A;  3RTR B;  1E4U A;  3IHP A;  2JMD A;  2KR4 A;  2RR4 A;  2LAU A;  1WEN A;  2L0B A;  2ECW A;  5LKU A;  2KKX A;  2G45 A;  5TDR A;  5LKX A;  4PTB A;  2CRR A;  1WEQ A;  2VJE B;  3SUB A;  4V3K C;  2XOZ A;  3E2D A;  1MM2 A;  2YHO A;  4TKP B;  2G6Q A;  5LKT A;  2ECG A;  4YBT A;  2MNY A;  1MM3 A;  4B7Y C;  5B75 A;  1BOR A;  2XOY A;  3PUR A;  2RI7 A;  3FL2 A;  1Z2Q A;  2MA6 A;  2Y43 A;  4AYC B;  4QF3 A;  2KIZ A;  1HYI A;  3I2D A;  2LGV A;  2DX8 A;  2K16 A;  2KFT A;  3PLW A;  2LDR A;  5C11 A;  4S3O C;  3T7L A;  5G0F A;  4AVX A;  1HYJ A;  4A49 A;  4YAT A;  3EB5 A;  4FIP A;  2H0D B;  4AUQ B;  2YRE A;  2JRJ A;  2MA5 A;  3O47 A;  4IC2 A;  3ZVY A;  3LJU X;  5SVX A;  4N3W A;  3ZVZ B;  2YHN A;  2KGI A;  2M3H A;  2MKE A;  1DCQ A;  3T9K A;  3ZPV E;  2VPB A;  2KGG A;  2F6N A;  2LN0 A;  2OWA A;  2YUC A;  2EGM A;  2D8S A;  2YYR A;  2CSV A;  2XOC A;  5AIU A;  2MNZ A;  2JMI A;  1LDK C;  3H7H A;  2OXQ C;  4Z0R A;  4S3O B;  1Z60 A;  1JM7 B;  3M62 A;  2QJ0 A;  1FBV A;  1LDJ B;  1CHC A;  5B78 A;  1WGM A;  3HCU A;  3FAN A;  2NAA A;  5LKZ A;  2D8U A;  2M13 A;  2ZET C;  3MHH A;  2FD4 A;  4AYC A;  1RMD A;  4R8P K;  2JM3 A;  2XB1 A;  3HCS A;  5B79 A;  1VD4 A;  5KH7 A;  4CCG X;  5B77 A;  4AP4 A;  2LV9 A;  4FO9 A;  2MUM A;  4A4B A;  4LK9 A;  2E6S A;  5I3L A;  1WEE A;  1X4U A;  5J3X A;  2L7P A;  4LKA A;  1WEW A;  3C6W A;  3VK6 A;  4PPE A;  5H9M A;  4Q6F A;  2EOD A;  2F42 A;  1IYM A;  4GNE A;  5SVI A;  1WEP A;  1DVP A;  2LQ6 A;  5TAB A;  2ECV A;  4UP0 A;  2YUR A;  2LXP C;  4O64 A;  2YQM A;  2ECN A;  2K4D A;  5DIN A;  2CSY A;  2F6J A;  4BHW A;  4GND A;  3DQV R;  1T1H A;  1F62 A;  3ASL A;  3RPG C;  5C13 A;  3KV6 A;  4YAX A;  2LGG A;  1JM7 A;  3EB6 A;  1N87 A;  2L75 A;  4GNF A;  3T6R A;  2HYE D;  3HTK C;  2CKL A;  3C5K A;  4UP5 A;  4P5O B;  2EXU A;  2EA6 A;  4V3L C;  3ZPV 1;  5G05 B;  2CRW A;  2LGL A;  2YSJ A;  4WZ2 A;  2I50 A;  3GL6 A;  3O70 A;  3KNV A;  1U6G B;  3FAO A;  1WES A;  2VNF A;  5H1U A;  2AN6 A;  4GB0 A;  5SVI B;  3ZYQ A;  1K2F A;  4C9Z A;  2KU3 A;  1V87 A;  2PUY A;  4FJC A;  2KWJ A;  3N9N A;  4LAD B;  5G04 B;  4O62 A;  3DWD A;  2K17 A;  2IDA A;  4UI9 B;  3SHB A;  4B86 C;  4L7X A;  3O35 A;  4MSX A;  4QQ4 A;  4X3G A;  3LVQ E;  1X4I A;  3U5O A;  3GV4 A;  4IC3 A;  2FSA A;  4XI1 A;  2XP0 A; 
#chains in the Genus database with same CATH homology
 2EGM A;  2EXU A;  2DJA A;  2P57 A;  4OGC A;  2D8U A;  3FJU B;  3Q1D A;  2M13 A;  3LDY A;  5SVI A;  2FD4 A;  3FM8 C;  2CSV A;  2RR4 A;  2CRW A;  2LAU A;  2XOC A;  2IQJ A;  2XOY A;  2JM3 A;  3MDB C;  4Z0O A;  2FFW A;  3M7K A;  4QQ4 A;  2YRE A;  3LVQ E;  2CON A;  3O47 A;  3JUE A;  3LJU X;  2KKX A;  4H9D A;  3H7H A;  5SVY A;  5SVI B;  2E61 A;  5SVX A;  3LVR E;  3FEH A;  5K3Q A;  3KDE C;  2JUN A;  2MKE A;  4Z0R A;  1DCQ A;  3T9K A;  4OGE A;  2CRR A;  4F1P A;  2YVR A;  2L7P A;  3SUB A;  3E2D A;  2XOZ A;  3PLW A;  3DDT A;  2OWA A;  2KKY A;  4O62 A;  2XP0 A;  3DWD A;  2B0O E; 
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