2XOCA

C-terminal cysteine-rich domain of human chfr bound to madpr
Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
240
structure length
213
Chain Sequence
PYVVCRQCPEYRRQAAQPPHCPDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Homo sapiens
publication title Structural Basis of Poly(Adp-Ribose) Recognition by the Multizinc Binding Domain of Checkpoint with Forkhead-Associated and Ring Domains (Chfr).
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE CHFR
total genus 64
structure length 213
sequence length 240
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10283 zf-CCHH PBZ domain
A PF17979 zf-CRD Cysteine rich domain with multizinc binding regions
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.140 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2xocA01
2XOYA 2XOCA 2XP0A 2XOZA
chains in the Genus database with same CATH superfamily
3N9NA 3VK6A 2YHOA 3LQIA 3Q1DA 3FAOA 4CCGX 1ZBDB 3U5PA 2JMIA 1BORA 4I7BA 2E6SA 2VJEB 2L7PA 4XI1A 1LDJB 3KV5A 3FEHA 4WZ3B 3DDTA 4N3WA 4H9DA 1CHCA 4BBQA 5TRBA 2D8UA 3ZNIA 4CA1A 1WEQA 4V3KC 5B75A 2MD8C 2LV9A 2MNYA 4F52B 3N9OA 3HCTA 2OXQC 2DX8A 5K3QA 1WEWA 3RTRB 2LXPC 2B0OE 2YVRA 3EB6A 2ECVA 4GB0A 1HYIA 3ZTGA 4Q6FA 3ZVYA 3ZVZB 4FIPA 1HYJA 3SOWA 3QZVA 4WZ0A 2L5UA 5G05B 3PLWA 3M62A 2CT2A 5LKUA 3KQIA 2C2VS 5H1VA 2HYED 2FSAA 3FL2A 2MD7B 4UP5A 3ZPVE 2LGKA 1WILA 4MVTA 4O64A 2XOCA 2KKXA 2MA5A 4NN2A 2KU3A 1WIMA 1IYMA 2E61A 2I50A 2JM3A 4S3OC 3O70A 3KV6A 1JM7B 2ZETC 2K4DA 2KWJA 3E2DA 2L80A 2XP0A 2LRIC 2YU4A 3L11A 2LXHC 4UP0A 5TDWA 2M1RA 4R2YA 4X3GA 2QIZA 2M85A 5D1KB 4B86C 1N87A 4YADA 1JM7A 1WEVA 3MHHA 5SVXA 4A0CD 4PPEA 2H0DA 1WEPA 2YW8A 2KIZA 3SOUA 4YATA 2LAUA 3IHPA 4WZ2A 3U5NA 2DSMA 1Z6UA 2KWOA 2M3HA 5C11A 3SOXA 5KH3A 4V3LC 2KWNA 3DPLR 1WEOA 2PNXA 3N9LA 1VFYA 3M63A 2LGLA 2NAAA 3GL6A 3T7LA 2VPEA 4ZDTA 2CSYA 2XOYA 2F6NA 2QJ0A 2EA6A 2F42A 4YBMA 2LQ6A 2DJAA 2G43A 2VNFA 4A4CA 5AIUA 4AYCA 4GNGA 4R7EA 1DVPA 2YQLA 2YSJA 5FB0A 5LCWB 3HTKC 2RSDA 4Z0RA 2MKEA 4GNFA 1WENA 2L0BA 5I3LA 1LDKC 1WEEA 2ECGA 2JMDA 1RMDA 3FANA 2OWAA 4FJCA 2YYRA 2YHNA 3T6RA 3LQJA 2EXUA 4A4BA 2LGGA 4YC9A 4AP4A 4OGCA 4QF2A 2FUIA 2XEUA 5G0FA 3U5MA 1E4UA 3EB5A 2E6RA 2L43A 2KGIA 2L75A 1T1HA 5B79A 1WE9A 1FP0A 4YBTA 1X4JA 2IDAA 3RPGB 3V43A 2CKLB 2LN0A 4OGEA 2FD4A 3N9MA 1F62A 4BHWA 5H1TA 5LKZA 2M6MA 3LJUX 3JUEA 1JOCA 1WEUA 2H0DB 2VPBA 2VPDA 5B76A 2MIQA 3ZYQA 3LDYA 4ZQLA 2PUYA 2CKLA 3MHSA 2IQJA 3N9QA 3DQVR 2P57A 4FO9A 3M7KA 3O47A 2ECIA 2EODA 4AVXA 3SHBA 2MA6A 3LVQE 5TBNA 2XB1A 3HCSA 4UI9B 2MT5A 1VYXA 4IC2A 4LJNA 1G25A 2K1JA 4AYCB 4S3OB 2AN6A 5DINA 3DWDA 3M99A 5LKTA 3NG2A 3SUBA 4AUQB 2UZGA 2KREA 2YQMA 2K17A 4L58A 5D1LB 3MDBC 5C13A 1U6GB 2KYUA 3L1XA 5AITA 2XOZA 1FBVA 2G45A 3KNVA 1MM2A 2JUNA 4LKAA 4N4FA 2VJFB 2RI7A 2EGPA 2YREA 1WESA 3T9KA 4ZUXU 1VD4A 4LLBA 2EGMA 3I2DA 2CONA 5JG6A 2ECJA 4IC3A 3O7AA 4I7DA 2Y1MA 2VJFA 4L7XA 3C6WA 2K16A 4YABA 5J3XA 3FJUB 2VPGA 3RPGC 2VJEA 5SVIB 2CRRA 5H1UA 1X4UA 4I7CA 2G6QA 5B8DA 2YT5A 1XWHA 2Y43A 5KH9A 3O37A 3N9PA 4YAXA 2LGVA 1Z60A 4A49A 4LADB 2ECTA 5SVIA 1V87A 5TABA 5TDRA 4YBSA 3PUQA 2CSZA 1K2FA 5FB1A 1X4IA 3LVRE 2ECNA 3PHDA 5G04B 2FUUA 3O34A 2FFWA 3O35A 2CSVA 2QICA 2YURA 2Y1NA 4Z0OA 4P5OB 1MM3A 5D1MB 4W4UA 3O33A 5SVYA 3FM8C 3ZPV1 4QQ4A 3U5OA 3HCUA 4WA6A 5B77A 2MUMA 2F6JA 4F1PA 2LDRA 2MNZA 5FEYA 2VP7A 3O36A 4FK5A 1WEMA 3L1ZB 2KR4A 2RR4A 2BAYA 3H7HA 2KGGA 5FERA 3C5KA 5LKXA 1WGMA 5EYAF 2C2LA 3ASLA 4B7YC 4QF3A 4TKPB 2CRWA 2KFTA 1MBMA 4GNDA 2M13A 2ECWA 2JRJA 4O62A 4PTBA 4GNEA 3LRQA 2D8SA 5B78A 3KDEC 3LQHA 4LK9A 2KWKA 2JMJA 2HDPA 2KE1A 2YUCA 4R8PK 3PURA 5KH7A 5H9MA 4MSXA 4C9ZA 1DCQA 1WFKA 3GV4A 5DKAA 1Z2QA 2YSMA 2KKYA
chains in the Genus database with same CATH topology
2MKEA 2XOYA 4O62A 2EXUA 5SVIB 3SUBA 2CRRA 2P57A 3E2DA 2DJAA 3M7KA 5K3QA 3KDEC 2XP0A 2B0OE 3LVRE 2YVRA 3O47A 3Q1DA 2FD4A 4OGEA 2YREA 2LAUA 3T9KA 3LJUX 3JUEA 4OGCA 2FFWA 2RR4A 3H7HA 2L7PA 2CSVA 2XOCA 2KKXA 3LVQE 2EGMA 3MDBC 2CONA 3FEHA 3DWDA 4Z0OA 3DDTA 3LDYA 4H9DA 1DCQA 2XOZA 5SVIA 2E61A 2D8UA 2OWAA 3PLWA 5SVYA 3FM8C 4Z0RA 2CRWA 4QQ4A 2JM3A 2KKYA 2M13A 5SVXA 2IQJA 2JUNA 4F1PA 3FJUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XOY A;  2XOC A;  2XP0 A;  2XOZ A; 
#chains in the Genus database with same CATH topology
 3N9N A;  3VK6 A;  2YHO A;  3LQI A;  3Q1D A;  3FAO A;  4CCG X;  1ZBD B;  3U5P A;  2JMI A;  1BOR A;  4I7B A;  2E6S A;  2VJE B;  2L7P A;  4XI1 A;  1LDJ B;  3KV5 A;  3FEH A;  4WZ3 B;  3DDT A;  4N3W A;  4H9D A;  1CHC A;  4BBQ A;  5TRB A;  2D8U A;  3ZNI A;  4CA1 A;  1WEQ A;  4V3K C;  5B75 A;  2MD8 C;  2LV9 A;  2MNY A;  4F52 B;  3N9O A;  3HCT A;  2OXQ C;  2DX8 A;  5K3Q A;  1WEW A;  3RTR B;  2LXP C;  2B0O E;  2YVR A;  3EB6 A;  2ECV A;  4GB0 A;  1HYI A;  3ZTG A;  4Q6F A;  3ZVY A;  3ZVZ B;  4FIP A;  1HYJ A;  3SOW A;  3QZV A;  4WZ0 A;  2L5U A;  5G05 B;  3PLW A;  3M62 A;  2CT2 A;  5LKU A;  3KQI A;  2C2V S;  5H1V A;  2HYE D;  2FSA A;  3FL2 A;  2MD7 B;  4UP5 A;  3ZPV E;  2LGK A;  1WIL A;  4MVT A;  4O64 A;  2XOC A;  2KKX A;  2MA5 A;  4NN2 A;  2KU3 A;  1WIM A;  1IYM A;  2E61 A;  2I50 A;  2JM3 A;  4S3O C;  3O70 A;  3KV6 A;  1JM7 B;  2ZET C;  2K4D A;  2KWJ A;  3E2D A;  2L80 A;  2XP0 A;  2LRI C;  2YU4 A;  3L11 A;  2LXH C;  4UP0 A;  5TDW A;  2M1R A;  4R2Y A;  4X3G A;  2QIZ A;  2M85 A;  5D1K B;  4B86 C;  1N87 A;  4YAD A;  1JM7 A;  1WEV A;  3MHH A;  5SVX A;  4A0C D;  4PPE A;  2H0D A;  1WEP A;  2YW8 A;  2KIZ A;  3SOU A;  4YAT A;  2LAU A;  3IHP A;  4WZ2 A;  3U5N A;  2DSM A;  1Z6U A;  2KWO A;  2M3H A;  5C11 A;  3SOX A;  5KH3 A;  4V3L C;  2KWN A;  3DPL R;  1WEO A;  2PNX A;  3N9L A;  1VFY A;  3M63 A;  2LGL A;  2NAA A;  3GL6 A;  3T7L A;  2VPE A;  4ZDT A;  2CSY A;  2XOY A;  2F6N A;  2QJ0 A;  2EA6 A;  2F42 A;  4YBM A;  2LQ6 A;  2DJA A;  2G43 A;  2VNF A;  4A4C A;  5AIU A;  4AYC A;  4GNG A;  4R7E A;  1DVP A;  2YQL A;  2YSJ A;  5FB0 A;  5LCW B;  3HTK C;  2RSD A;  4Z0R A;  2MKE A;  4GNF A;  1WEN A;  2L0B A;  5I3L A;  1LDK C;  1WEE A;  2ECG A;  2JMD A;  1RMD A;  3FAN A;  2OWA A;  4FJC A;  2YYR A;  2YHN A;  3T6R A;  3LQJ A;  2EXU A;  4A4B A;  2LGG A;  4YC9 A;  4AP4 A;  4OGC A;  4QF2 A;  2FUI A;  2XEU A;  5G0F A;  3U5M A;  1E4U A;  3EB5 A;  2E6R A;  2L43 A;  2KGI A;  2L75 A;  1T1H A;  5B79 A;  1WE9 A;  1FP0 A;  4YBT A;  1X4J A;  2IDA A;  3RPG B;  3V43 A;  2CKL B;  2LN0 A;  4OGE A;  2FD4 A;  3N9M A;  1F62 A;  4BHW A;  5H1T A;  5LKZ A;  2M6M A;  3LJU X;  3JUE A;  1JOC A;  1WEU A;  2H0D B;  2VPB A;  2VPD A;  5B76 A;  2MIQ A;  3ZYQ A;  3LDY A;  4ZQL A;  2PUY A;  2CKL A;  3MHS A;  2IQJ A;  3N9Q A;  3DQV R;  2P57 A;  4FO9 A;  3M7K A;  3O47 A;  2ECI A;  2EOD A;  4AVX A;  3SHB A;  2MA6 A;  3LVQ E;  5TBN A;  2XB1 A;  3HCS A;  4UI9 B;  2MT5 A;  1VYX A;  4IC2 A;  4LJN A;  1G25 A;  2K1J A;  4AYC B;  4S3O B;  2AN6 A;  5DIN A;  3DWD A;  3M99 A;  5LKT A;  3NG2 A;  3SUB A;  4AUQ B;  2UZG A;  2KRE A;  2YQM A;  2K17 A;  4L58 A;  5D1L B;  3MDB C;  5C13 A;  1U6G B;  2KYU A;  3L1X A;  5AIT A;  2XOZ A;  1FBV A;  2G45 A;  3KNV A;  1MM2 A;  2JUN A;  4LKA A;  4N4F A;  2VJF B;  2RI7 A;  2EGP A;  2YRE A;  1WES A;  3T9K A;  4ZUX U;  1VD4 A;  4LLB A;  2EGM A;  3I2D A;  2CON A;  5JG6 A;  2ECJ A;  4IC3 A;  3O7A A;  4I7D A;  2Y1M A;  2VJF A;  4L7X A;  3C6W A;  2K16 A;  4YAB A;  5J3X A;  3FJU B;  2VPG A;  3RPG C;  2VJE A;  5SVI B;  2CRR A;  5H1U A;  1X4U A;  4I7C A;  2G6Q A;  5B8D A;  2YT5 A;  1XWH A;  2Y43 A;  5KH9 A;  3O37 A;  3N9P A;  4YAX A;  2LGV A;  1Z60 A;  4A49 A;  4LAD B;  2ECT A;  5SVI A;  1V87 A;  5TAB A;  5TDR A;  4YBS A;  3PUQ A;  2CSZ A;  1K2F A;  5FB1 A;  1X4I A;  3LVR E;  2ECN A;  3PHD A;  5G04 B;  2FUU A;  3O34 A;  2FFW A;  3O35 A;  2CSV A;  2QIC A;  2YUR A;  2Y1N A;  4Z0O A;  4P5O B;  1MM3 A;  5D1M B;  4W4U A;  3O33 A;  5SVY A;  3FM8 C;  3ZPV 1;  4QQ4 A;  3U5O A;  3HCU A;  4WA6 A;  5B77 A;  2MUM A;  2F6J A;  4F1P A;  2LDR A;  2MNZ A;  5FEY A;  2VP7 A;  3O36 A;  4FK5 A;  1WEM A;  3L1Z B;  2KR4 A;  2RR4 A;  2BAY A;  3H7H A;  2KGG A;  5FER A;  3C5K A;  5LKX A;  1WGM A;  5EYA F;  2C2L A;  3ASL A;  4B7Y C;  4QF3 A;  4TKP B;  2CRW A;  2KFT A;  1MBM A;  4GND A;  2M13 A;  2ECW A;  2JRJ A;  4O62 A;  4PTB A;  4GNE A;  3LRQ A;  2D8S A;  5B78 A;  3KDE C;  3LQH A;  4LK9 A;  2KWK A;  2JMJ A;  2HDP A;  2KE1 A;  2YUC A;  4R8P K;  3PUR A;  5KH7 A;  5H9M A;  4MSX A;  4C9Z A;  1DCQ A;  1WFK A;  3GV4 A;  5DKA A;  1Z2Q A;  2YSM A;  2KKY A; 
#chains in the Genus database with same CATH homology
 2MKE A;  2XOY A;  4O62 A;  2EXU A;  5SVI B;  3SUB A;  2CRR A;  2P57 A;  3E2D A;  2DJA A;  3M7K A;  5K3Q A;  3KDE C;  2XP0 A;  2B0O E;  3LVR E;  2YVR A;  3O47 A;  3Q1D A;  2FD4 A;  4OGE A;  2YRE A;  2LAU A;  3T9K A;  3LJU X;  3JUE A;  4OGC A;  2FFW A;  2RR4 A;  3H7H A;  2L7P A;  2CSV A;  2XOC A;  2KKX A;  3LVQ E;  2EGM A;  3MDB C;  2CON A;  3FEH A;  3DWD A;  4Z0O A;  3DDT A;  3LDY A;  4H9D A;  1DCQ A;  2XOZ A;  5SVI A;  2E61 A;  2D8U A;  2OWA A;  3PLW A;  5SVY A;  3FM8 C;  4Z0R A;  2CRW A;  4QQ4 A;  2JM3 A;  2KKY A;  2M13 A;  5SVX A;  2IQJ A;  2JUN A;  4F1P A;  3FJU B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.