2XOYA

C-terminal cysteine-rich domain of human chfr bound to p(1),p(2)- diadenosine-5'-pyrophosphate
Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
239
structure length
212
Chain Sequence
PYVVCRQCPEYRRQAAQPPHCPDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Homo sapiens
publication title Structural Basis of Poly(Adp-Ribose) Recognition by the Multizinc Binding Domain of Checkpoint with Forkhead-Associated and Ring Domains (Chfr).
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE CHFR
total genus 65
structure length 212
sequence length 239
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10283 zf-CCHH PBZ domain
A PF17979 zf-CRD Cysteine rich domain with multizinc binding regions
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.140 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2xoyA01
2XOCA 2XP0A 2XOZA 2XOYA
chains in the Genus database with same CATH superfamily
4LADB 1U6GB 3N9MA 1G25A 2MKEA 2F6JA 2MA5A 4P5OB 4YBSA 3PLWA 2K16A 5EYAF 4Z0OA 3DPLR 1WFKA 3Q1DA 2H0DA 3RPGC 2YUCA 2QJ0A 5SVYA 1WEEA 3L11A 3U5MA 1WEQA 2E6SA 4H9DA 4CCGX 4Q6FA 5D1LB 4AP4A 2RR4A 4LKAA 3O36A 3VK6A 2LXPC 2YYRA 2EGMA 4YBTA 4LJNA 2DX8A 4O62A 2P57A 4OGCA 5B77A 1DCQA 3N9PA 5G05B 2G43A 4I7DA 1X4IA 2FUUA 5H1UA 3V43A 3ZYQA 4L7XA 3U5PA 4F52B 1LDJB 2EXUA 3H7HA 1JM7B 2VJEA 2JMJA 2KGGA 2AN6A 4I7CA 3GL6A 1MM3A 4XI1A 4LK9A 2LDRA 3KNVA 1WILA 4GNGA 2F42A 3O47A 3ZTGA 2VPEA 3NG2A 2CSZA 4FK5A 4A0CD 4OGEA 4F1PA 4YC9A 3KQIA 2CONA 3U5NA 5D1KB 3LJUX 5TBNA 2UZGA 2KR4A 4LLBA 1WEOA 2PNXA 5LKZA 4GNEA 2ECJA 3O70A 3L1ZB 2KYUA 2LAUA 2C2VS 2HDPA 5TRBA 2MUMA 3N9OA 2QIZA 2OWAA 3MHSA 2ECNA 2KKYA 2YSMA 5JG6A 1VYXA 2ECWA 2KWOA 2MNYA 1WENA 4N3WA 3DQVR 2KGIA 2MA6A 2DSMA 2YQMA 2CSYA 3ZVZB 2YREA 2L80A 5SVIA 3RPGB 2I50A 2KU3A 2JMIA 4FJCA 2KWNA 2L75A 3I2DA 2H0DB 2MD8C 1HYJA 4BBQA 2HYED 2L7PA 3PUQA 1WEVA 2KIZA 3T9KA 5LKUA 3KV5A 1WE9A 3KDEC 4GB0A 3LQIA 2YT5A 1X4JA 4W4UA 4CA1A 2FD4A 2Y1MA 2YVRA 3M63A 3FAOA 4NN2A 2KWKA 4O64A 3E2DA 3T7LA 2ECIA 2FFWA 2KFTA 2VJFA 4QF3A 4PTBA 4WZ2A 4A49A 4GNDA 2L43A 1FP0A 1E4UA 3LVRE 4UP5A 3MDBC 2XOZA 4YAXA 2YSJA 2ECTA 2EGPA 5H1TA 2Y1NA 4Z0RA 5KH9A 3SUBA 2IQJA 2VPDA 2CRRA 5FB0A 5B8DA 2MIQA 2VP7A 4QQ4A 4AYCA 5B78A 2ZETC 5DKAA 1JOCA 2VJEB 4YABA 5KH3A 1MBMA 5H1VA 2LQ6A 3PURA 1WIMA 4WZ3B 5D1MB 5K3QA 2XOYA 4YBMA 2YQLA 5G04B 2ECGA 2JMDA 2L0BA 3HCSA 4PPEA 4R7EA 2LRIC 3KV6A 5TABA 3ZPVE 2B0OE 2IDAA 2K4DA 3T6RA 2NAAA 3FL2A 1BORA 4QF2A 4N4FA 1F62A 2YURA 4S3OC 2FSAA 4R8PK 3RTRB 2E6RA 2JM3A 2CRWA 4AUQB 5AITA 3ZPV1 1MM2A 5LCWB 2LGVA 3HCTA 4UP0A 2MNZA 3FANA 3SHBA 1N87A 4IC2A 4ZDTA 2M3HA 3SOUA 1IYMA 4WZ0A 4FIPA 2G6QA 1Z6UA 2LV9A 2XEUA 3C6WA 3GV4A 1ZBDB 4L58A 2M1RA 3ZVYA 1FBVA 5SVIB 5TDRA 3L1XA 1WEPA 5LKTA 1T1HA 2K17A 2KWJA 4V3KC 4AVXA 1DVPA 5TDWA 4FO9A 2XP0A 4X3GA 2PUYA 3SOXA 2VPBA 2RSDA 2MT5A 2M85A 2XB1A 1CHCA 1K2FA 2E61A 1WEMA 2CKLA 4ZQLA 1WEUA 1VD4A 2VJFB 2LN0A 2DJAA 3LQJA 5FERA 5B76A 3C5KA 1RMDA 5KH7A 1Z60A 3N9LA 4TKPB 4B7YC 3SOWA 5C13A 3ASLA 3FEHA 3HTKC 4AYCB 1WEWA 3LVQE 3M62A 5LKXA 2FUIA 4ZUXU 1VFYA 4A4CA 3O34A 3FM8C 2JRJA 5FEYA 3M7KA 3LDYA 2Y43A 3O7AA 2CSVA 2YHNA 2JUNA 4UI9B 4C9ZA 5C11A 2G45A 3JUEA 3M99A 2K1JA 4BHWA 4A4BA 4YADA 5G0FA 5B75A 2BAYA 3N9QA 1Z2QA 3IHPA 3LRQA 2RI7A 3HCUA 5B79A 3MHHA 2D8UA 5H9MA 5FB1A 2YU4A 4S3OB 2LGLA 3O35A 2YW8A 1WGMA 2YHOA 4V3LC 4R2YA 1X4UA 5DINA 4I7BA 3ZNIA 3EB5A 1HYIA 2KREA 2VPGA 1WESA 1JM7A 3DDTA 2VNFA 4GNFA 2XOCA 2EA6A 3O37A 4IC3A 4MVTA 4WA6A 2L5UA 2MD7B 3EB6A 2LXHC 2OXQC 3FJUB 4YATA 3O33A 2C2LA 2ECVA 3DWDA 2CT2A 5J3XA 5AIUA 2LGKA 2KE1A 2M6MA 2D8SA 2M13A 4MSXA 5I3LA 3U5OA 2QICA 2EODA 5SVXA 2F6NA 2KKXA 4B86C 3PHDA 2CKLB 3LQHA 1XWHA 2LGGA 3N9NA 1V87A 3QZVA 1LDKC
chains in the Genus database with same CATH topology
3DWDA 4Z0RA 1DCQA 3SUBA 5SVIB 2FD4A 2IQJA 2CRRA 3LVQE 2YVRA 3DDTA 2MKEA 2E61A 2M13A 2CRWA 4QQ4A 2XOCA 2YREA 2LAUA 3E2DA 2DJAA 5SVIA 4H9DA 3FM8C 2FFWA 3M7KA 2B0OE 3O47A 2RR4A 3PLWA 3LDYA 2CSVA 2JUNA 5SVXA 4Z0OA 2EGMA 4OGEA 2XP0A 3JUEA 2L7PA 2KKXA 3Q1DA 4F1PA 3LVRE 2EXUA 3T9KA 3H7HA 3MDBC 3FEHA 4O62A 2CONA 2P57A 2XOZA 4OGCA 2XOYA 2OWAA 3LJUX 3FJUB 5K3QA 3KDEC 2JM3A 2KKYA 5SVYA 2D8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XOC A;  2XP0 A;  2XOZ A;  2XOY A; 
#chains in the Genus database with same CATH topology
 4LAD B;  1U6G B;  3N9M A;  1G25 A;  2MKE A;  2F6J A;  2MA5 A;  4P5O B;  4YBS A;  3PLW A;  2K16 A;  5EYA F;  4Z0O A;  3DPL R;  1WFK A;  3Q1D A;  2H0D A;  3RPG C;  2YUC A;  2QJ0 A;  5SVY A;  1WEE A;  3L11 A;  3U5M A;  1WEQ A;  2E6S A;  4H9D A;  4CCG X;  4Q6F A;  5D1L B;  4AP4 A;  2RR4 A;  4LKA A;  3O36 A;  3VK6 A;  2LXP C;  2YYR A;  2EGM A;  4YBT A;  4LJN A;  2DX8 A;  4O62 A;  2P57 A;  4OGC A;  5B77 A;  1DCQ A;  3N9P A;  5G05 B;  2G43 A;  4I7D A;  1X4I A;  2FUU A;  5H1U A;  3V43 A;  3ZYQ A;  4L7X A;  3U5P A;  4F52 B;  1LDJ B;  2EXU A;  3H7H A;  1JM7 B;  2VJE A;  2JMJ A;  2KGG A;  2AN6 A;  4I7C A;  3GL6 A;  1MM3 A;  4XI1 A;  4LK9 A;  2LDR A;  3KNV A;  1WIL A;  4GNG A;  2F42 A;  3O47 A;  3ZTG A;  2VPE A;  3NG2 A;  2CSZ A;  4FK5 A;  4A0C D;  4OGE A;  4F1P A;  4YC9 A;  3KQI A;  2CON A;  3U5N A;  5D1K B;  3LJU X;  5TBN A;  2UZG A;  2KR4 A;  4LLB A;  1WEO A;  2PNX A;  5LKZ A;  4GNE A;  2ECJ A;  3O70 A;  3L1Z B;  2KYU A;  2LAU A;  2C2V S;  2HDP A;  5TRB A;  2MUM A;  3N9O A;  2QIZ A;  2OWA A;  3MHS A;  2ECN A;  2KKY A;  2YSM A;  5JG6 A;  1VYX A;  2ECW A;  2KWO A;  2MNY A;  1WEN A;  4N3W A;  3DQV R;  2KGI A;  2MA6 A;  2DSM A;  2YQM A;  2CSY A;  3ZVZ B;  2YRE A;  2L80 A;  5SVI A;  3RPG B;  2I50 A;  2KU3 A;  2JMI A;  4FJC A;  2KWN A;  2L75 A;  3I2D A;  2H0D B;  2MD8 C;  1HYJ A;  4BBQ A;  2HYE D;  2L7P A;  3PUQ A;  1WEV A;  2KIZ A;  3T9K A;  5LKU A;  3KV5 A;  1WE9 A;  3KDE C;  4GB0 A;  3LQI A;  2YT5 A;  1X4J A;  4W4U A;  4CA1 A;  2FD4 A;  2Y1M A;  2YVR A;  3M63 A;  3FAO A;  4NN2 A;  2KWK A;  4O64 A;  3E2D A;  3T7L A;  2ECI A;  2FFW A;  2KFT A;  2VJF A;  4QF3 A;  4PTB A;  4WZ2 A;  4A49 A;  4GND A;  2L43 A;  1FP0 A;  1E4U A;  3LVR E;  4UP5 A;  3MDB C;  2XOZ A;  4YAX A;  2YSJ A;  2ECT A;  2EGP A;  5H1T A;  2Y1N A;  4Z0R A;  5KH9 A;  3SUB A;  2IQJ A;  2VPD A;  2CRR A;  5FB0 A;  5B8D A;  2MIQ A;  2VP7 A;  4QQ4 A;  4AYC A;  5B78 A;  2ZET C;  5DKA A;  1JOC A;  2VJE B;  4YAB A;  5KH3 A;  1MBM A;  5H1V A;  2LQ6 A;  3PUR A;  1WIM A;  4WZ3 B;  5D1M B;  5K3Q A;  2XOY A;  4YBM A;  2YQL A;  5G04 B;  2ECG A;  2JMD A;  2L0B A;  3HCS A;  4PPE A;  4R7E A;  2LRI C;  3KV6 A;  5TAB A;  3ZPV E;  2B0O E;  2IDA A;  2K4D A;  3T6R A;  2NAA A;  3FL2 A;  1BOR A;  4QF2 A;  4N4F A;  1F62 A;  2YUR A;  4S3O C;  2FSA A;  4R8P K;  3RTR B;  2E6R A;  2JM3 A;  2CRW A;  4AUQ B;  5AIT A;  3ZPV 1;  1MM2 A;  5LCW B;  2LGV A;  3HCT A;  4UP0 A;  2MNZ A;  3FAN A;  3SHB A;  1N87 A;  4IC2 A;  4ZDT A;  2M3H A;  3SOU A;  1IYM A;  4WZ0 A;  4FIP A;  2G6Q A;  1Z6U A;  2LV9 A;  2XEU A;  3C6W A;  3GV4 A;  1ZBD B;  4L58 A;  2M1R A;  3ZVY A;  1FBV A;  5SVI B;  5TDR A;  3L1X A;  1WEP A;  5LKT A;  1T1H A;  2K17 A;  2KWJ A;  4V3K C;  4AVX A;  1DVP A;  5TDW A;  4FO9 A;  2XP0 A;  4X3G A;  2PUY A;  3SOX A;  2VPB A;  2RSD A;  2MT5 A;  2M85 A;  2XB1 A;  1CHC A;  1K2F A;  2E61 A;  1WEM A;  2CKL A;  4ZQL A;  1WEU A;  1VD4 A;  2VJF B;  2LN0 A;  2DJA A;  3LQJ A;  5FER A;  5B76 A;  3C5K A;  1RMD A;  5KH7 A;  1Z60 A;  3N9L A;  4TKP B;  4B7Y C;  3SOW A;  5C13 A;  3ASL A;  3FEH A;  3HTK C;  4AYC B;  1WEW A;  3LVQ E;  3M62 A;  5LKX A;  2FUI A;  4ZUX U;  1VFY A;  4A4C A;  3O34 A;  3FM8 C;  2JRJ A;  5FEY A;  3M7K A;  3LDY A;  2Y43 A;  3O7A A;  2CSV A;  2YHN A;  2JUN A;  4UI9 B;  4C9Z A;  5C11 A;  2G45 A;  3JUE A;  3M99 A;  2K1J A;  4BHW A;  4A4B A;  4YAD A;  5G0F A;  5B75 A;  2BAY A;  3N9Q A;  1Z2Q A;  3IHP A;  3LRQ A;  2RI7 A;  3HCU A;  5B79 A;  3MHH A;  2D8U A;  5H9M A;  5FB1 A;  2YU4 A;  4S3O B;  2LGL A;  3O35 A;  2YW8 A;  1WGM A;  2YHO A;  4V3L C;  4R2Y A;  1X4U A;  5DIN A;  4I7B A;  3ZNI A;  3EB5 A;  1HYI A;  2KRE A;  2VPG A;  1WES A;  1JM7 A;  3DDT A;  2VNF A;  4GNF A;  2XOC A;  2EA6 A;  3O37 A;  4IC3 A;  4MVT A;  4WA6 A;  2L5U A;  2MD7 B;  3EB6 A;  2LXH C;  2OXQ C;  3FJU B;  4YAT A;  3O33 A;  2C2L A;  2ECV A;  3DWD A;  2CT2 A;  5J3X A;  5AIU A;  2LGK A;  2KE1 A;  2M6M A;  2D8S A;  2M13 A;  4MSX A;  5I3L A;  3U5O A;  2QIC A;  2EOD A;  5SVX A;  2F6N A;  2KKX A;  4B86 C;  3PHD A;  2CKL B;  3LQH A;  1XWH A;  2LGG A;  3N9N A;  1V87 A;  3QZV A;  1LDK C; 
#chains in the Genus database with same CATH homology
 3DWD A;  4Z0R A;  1DCQ A;  3SUB A;  5SVI B;  2FD4 A;  2IQJ A;  2CRR A;  3LVQ E;  2YVR A;  3DDT A;  2MKE A;  2E61 A;  2M13 A;  2CRW A;  4QQ4 A;  2XOC A;  2YRE A;  2LAU A;  3E2D A;  2DJA A;  5SVI A;  4H9D A;  3FM8 C;  2FFW A;  3M7K A;  2B0O E;  3O47 A;  2RR4 A;  3PLW A;  3LDY A;  2CSV A;  2JUN A;  5SVX A;  4Z0O A;  2EGM A;  4OGE A;  2XP0 A;  3JUE A;  2L7P A;  2KKX A;  3Q1D A;  4F1P A;  3LVR E;  2EXU A;  3T9K A;  3H7H A;  3MDB C;  3FEH A;  4O62 A;  2CON A;  2P57 A;  2XOZ A;  4OGC A;  2XOY A;  2OWA A;  3LJU X;  3FJU B;  5K3Q A;  3KDE C;  2JM3 A;  2KKY A;  5SVY A;  2D8U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.