The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
4
|
sequence length |
69
|
structure length |
69
|
Chain Sequence |
GSSGSSGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTGLE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insight into the zinc finger CW domain as a histone modification reader
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Homo sapiens
|
| molecule keywords |
Zinc finger CW-type PWWP domain protein 1
|
| total genus |
4
|
| structure length |
69
|
| sequence length |
69
|
| ec nomenclature | |
| pdb deposition date | 2006-12-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07496 | zf-CW | CW-type Zinc Finger |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Herpes Virus-1 |
#chains in the Genus database with same CATH superfamily 5SVI B; 2L7P A; 5SVX A; 2RR4 A; 4Z0O A; 4QQ4 A; 5SVI A; 5SVY A; 4Z0R A; 4O62 A; 2E61 A; #chains in the Genus database with same CATH topology 3PUQ A; 2RI7 A; 3FEH A; 1WES A; 4YAB A; 2B0O E; 2C2L A; 4BHW A; 5AIU A; 3C5K A; 2VPB A; 2AN6 A; 3O35 A; 4LK9 A; 5TRB A; 5KH7 A; 2ECG A; 4CA1 A; 5B79 A; 2CSZ A; 3KV5 A; 4F52 B; 3O70 A; 2KYU A; 1JOC A; 5FB0 A; 4IC2 A; 1Z6U A; 5C13 A; 4V3K C; 3T7L A; 2LGK A; 4WZ0 A; 3EB5 A; 1X4I A; 1FBV A; 1V87 A; 5C11 A; 2YSM A; 3ZTG A; 3U5N A; 2L75 A; 1HYI A; 2K17 A; 2DSM A; 3M7K A; 3LQH A; 2H0D A; 2ECT A; 2I50 A; 4H9D A; 3GL6 A; 3L1X A; 1MM2 A; 4B86 C; 3DQV R; 2DX8 A; 2VJE A; 5TDW A; 4GNF A; 1E4U A; 2QJ0 A; 3ZNI A; 4WZ3 B; 4AVX A; 4FO9 A; 3T9K A; 4AYC B; 5G0F A; 4N3W A; 3KNV A; 3HCS A; 3HCT A; 2YU4 A; 5FB1 A; 4UP5 A; 2LXH C; 2DJA A; 2MA5 A; 3DDT A; 1HYJ A; 3MHH A; 2CKL B; 2F42 A; 4IC3 A; 3FAO A; 4FK5 A; 4MSX A; 3RPG C; 5TDR A; 2YSJ A; 2KWJ A; 3L11 A; 3O36 A; 2KGI A; 2PNX A; 2KGG A; 1WEV A; 2KKY A; 4QF3 A; 3LVR E; 3DWD A; 3E2D A; 5K3Q A; 2K1J A; 5B76 A; 5JG6 A; 3U5P A; 1WGM A; 4QF2 A; 3SOU A; 3O7A A; 4GB0 A; 3N9Q A; 2ECN A; 2F6J A; 2G43 A; 2G45 A; 2XEU A; 3FL2 A; 2M3H A; 2F6N A; 2L43 A; 4PTB A; 2XOY A; 2D8U A; 2YUC A; 4ZDT A; 3MDB C; 5D1K B; 3LJU X; 4AP4 A; 2CSY A; 5D1M B; 3L1Z B; 4A4B A; 1N87 A; 5G05 B; 4FJC A; 3KV6 A; 4XI1 A; 3PHD A; 3NG2 A; 1WEO A; 4OGC A; 4WA6 A; 1Z60 A; 3H7H A; 1WEE A; 2CRW A; 2KE1 A; 2C2V S; 2RSD A; 4O64 A; 5LCW B; 2KU3 A; 2JUN A; 2QIZ A; 2JRJ A; 3M63 A; 5FER A; 2MNY A; 3SHB A; 3VK6 A; 2VPG A; 4GNE A; 5TAB A; 3HTK C; 5G04 B; 3LQI A; 1Z2Q A; 2Y1M A; 4WZ2 A; 3ZPV E; 2PUY A; 2KRE A; 1DVP A; 4LLB A; 5B8D A; 1F62 A; 1CHC A; 2LDR A; 1MBM A; 5LKT A; 2XOZ A; 3RPG B; 4GND A; 2YHO A; 2MA6 A; 2VJF B; 1RMD A; 1WEM A; 3O37 A; 2QIC A; 3O34 A; 4I7D A; 4BBQ A; 4S3O C; 2KIZ A; 4LKA A; 2LRI C; 2HYE D; 5I3L A; 4A4C A; 3LQJ A; 4N4F A; 2YRE A; 2L0B A; 3N9N A; 5SVI A; 1VYX A; 2E61 A; 3ZVY A; 2D8S A; 1JM7 B; 1DCQ A; 2ZET C; 3ZPV 1; 3Q1D A; 1LDJ B; 2MIQ A; 2EXU A; 1XWH A; 4Z0O A; 1WEN A; 1WIM A; 2LN0 A; 1WE9 A; 4NN2 A; 2EA6 A; 1VFY A; 2CON A; 2G6Q A; 1IYM A; 4ZQL A; 2YW8 A; 2FD4 A; 1WEP A; 2FUU A; 2MUM A; 2MT5 A; 5SVX A; 2OXQ C; 2EGP A; 3PUR A; 5TBN A; 5B75 A; 2KWN A; 3U5O A; 2H0D B; 3HCU A; 1FP0 A; 4Q6F A; 2L7P A; 4Z0R A; 5D1L B; 1LDK C; 1ZBD B; 2VJE B; 1X4J A; 4V3L C; 5AIT A; 3ZYQ A; 3LDY A; 4TKP B; 2NAA A; 5SVY A; 2Y43 A; 2JMD A; 5DIN A; 3M62 A; 4A0C D; 2ECI A; 1G25 A; 3T6R A; 3DPL R; 4S3O B; 2KWO A; 4UP0 A; 4W4U A; 5H9M A; 3SOW A; 3EB6 A; 4YAT A; 4B7Y C; 5LKU A; 2ECV A; 3GV4 A; 3M99 A; 5B78 A; 2KFT A; 3N9O A; 2LV9 A; 2L5U A; 4QQ4 A; 2IQJ A; 3V43 A; 5LKX A; 5FEY A; 2XB1 A; 1WIL A; 3QZV A; 2LAU A; 2K16 A; 4FIP A; 2P57 A; 2FUI A; 2KWK A; 2IDA A; 1K2F A; 3IHP A; 2XOC A; 2UZG A; 1WEU A; 2E6R A; 2JM3 A; 2FFW A; 5H1U A; 4L58 A; 2HDP A; 4F1P A; 2EGM A; 2CT2 A; 2ECJ A; 2XP0 A; 4AUQ B; 4AYC A; 2VNF A; 3FAN A; 2JMI A; 2KKX A; 3KQI A; 2MD7 B; 4C9Z A; 3LRQ A; 2FSA A; 2CKL A; 2M6M A; 3O47 A; 3N9P A; 4R7E A; 1X4U A; 4YBT A; 4YAD A; 4A49 A; 4O62 A; 1U6G B; 2LGG A; 2YHN A; 3JUE A; 3LVQ E; 5H1T A; 4OGE A; 4R2Y A; 2L80 A; 2M13 A; 3U5M A; 5H1V A; 3SUB A; 1BOR A; 2EOD A; 2MNZ A; 4L7X A; 5EYA F; 2BAY A; 2VPD A; 4GNG A; 2RR4 A; 2LXP C; 2YT5 A; 2M1R A; 1WEW A; 2VPE A; 1VD4 A; 3N9M A; 4ZUX U; 2YUR A; 3ZVZ B; 2CRR A; 2OWA A; 1MM3 A; 2YQM A; 4X3G A; 3MHS A; 5KH9 A; 5B77 A; 4MVT A; 3ASL A; 4P5O B; 5SVI B; 5KH3 A; 4I7C A; 4LAD B; 2VP7 A; 4YBS A; 2JMJ A; 2YQL A; 3FM8 C; 3SOX A; 1WFK A; 3PLW A; 2MD8 C; 3FJU B; 4YC9 A; 2YYR A; 4R8P K; 4UI9 B; 2K4D A; 2VJF A; 4CCG X; 4LJN A; 5DKA A; 1WEQ A; 4I7B A; 3N9L A; 2CSV A; 2ECW A; 3KDE C; 1T1H A; 2E6S A; 2KR4 A; 2LQ6 A; 5LKZ A; 2LGV A; 2M85 A; 4YBM A; 4PPE A; 4YAX A; 3O33 A; 2LGL A; 2MKE A; 5J3X A; 2YVR A; 3I2D A; 3RTR B; 3C6W A; 1JM7 A; 2Y1N A; #chains in the Genus database with same CATH homology 2XOZ A; 3MDB C; 2L7P A; 2FD4 A; 2RR4 A; 4F1P A; 4QQ4 A; 3LJU X; 2EGM A; 1DCQ A; 2XP0 A; 4Z0R A; 2IQJ A; 3FEH A; 2KKY A; 3Q1D A; 3LDY A; 2EXU A; 5SVI B; 5SVX A; 2LAU A; 3LVR E; 3JUE A; 3DWD A; 2B0O E; 3E2D A; 3LVQ E; 4Z0O A; 2CSV A; 4OGC A; 2P57 A; 3FM8 C; 5SVY A; 3KDE C; 5K3Q A; 2KKX A; 4OGE A; 3H7H A; 2CRW A; 2M13 A; 3T9K A; 3PLW A; 2XOC A; 2CRR A; 2OWA A; 3M7K A; 3SUB A; 2DJA A; 2JUN A; 2YRE A; 3DDT A; 2MKE A; 3O47 A; 2YVR A; 2JM3 A; 2FFW A; 3FJU B; 2CON A; 2XOY A; 4H9D A; 5SVI A; 4O62 A; 2E61 A; 2D8U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
