3DDTA

Crystal structure of the b2 box from murf1 in dimeric state
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
48
structure length
48
Chain Sequence
GAMGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (16-18)TII1 (-1-2)EMPTYTI1 (6-9)TI2 (9-12)AH1 (27-32)TI3 (18-21)TI6 (35-38)S3 (40-42)TI4 (19-22)S2 (23-25)TI5 (33-36)Updating...
connected with : NaN
molecule tags Ligase
source organism Homo sapiens
publication title Structural analysis of B-Box 2 from MuRF1: identification of a novel self-association pattern in a RING-like fold
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase TRIM63
total genus 10
structure length 48
sequence length 48
chains with identical sequence B, C
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2008-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3ddtA00
2DJAA 2CSVA 2D8UA 5K3QA 3DDTA 2JUNA 2YVRA 3Q1DA 2EGMA
chains in the Genus database with same CATH superfamily
2QIZA 3DQVR 2LQ6A 5LKXA 2YVRA 2ECJA 2AN6A 5LKTA 4QQ4A 2CONA 2K16A 4Z0RA 1LDKC 2P57A 5TDWA 1E4UA 3KDEC 2PNXA 4Q6FA 2HDPA 2LGVA 3FANA 3T9KA 1FP0A 2NAAA 3L1ZB 3FL2A 4QF3A 4BBQA 2JMDA 2FSAA 2VNFA 2D8UA 4A0CD 2VPBA 2EGPA 1F62A 4WZ2A 2KWNA 4FJCA 4CA1A 3U5PA 2YURA 1HYIA 2M13A 3O36A 2JUNA 3SHBA 4CCGX 3I2DA 1Z6UA 1WENA 3O33A 3ZTGA 5D1LB 2MNZA 3FJUB 3LQIA 1WEVA 1XWHA 1MM2A 5B76A 3RPGB 3DWDA 2ECTA 2K17A 3NG2A 4MSXA 5TBNA 3ZVYA 2VPGA 2KGIA 2G6QA 4I7BA 1K2FA 4UP0A 2XOYA 1WFKA 4XI1A 4B86C 2C2VS 5JG6A 2LGGA 5C11A 2LV9A 5D1MB 3QZVA 5G0FA 1WEUA 2BAYA 5FB1A 1WGMA 2CKLB 2JRJA 2IQJA 5K3QA 4X3GA 4TKPB 1ZBDB 1WEQA 1WEOA 2EXUA 3SUBA 2RR4A 2YSMA 4QF2A 2EGMA 2KWOA 4ZUXU 3N9MA 4B7YC 5EYAF 2E61A 3DDTA 1X4JA 3L11A 2CT2A 3RPGC 1X4UA 2L7PA 2YUCA 4WZ3B 2VJFB 2MKEA 2F6NA 2VPEA 2CKLA 3O70A 4YBMA 2DX8A 3LDYA 2Y43A 3PUQA 4V3LC 5B78A 3ZYQA 4UP5A 3O7AA 2XP0A 2KKYA 2YREA 4YBSA 2F6JA 2DSMA 3LVRE 1HYJA 2VJFA 1WE9A 2YW8A 5D1KB 3FAOA 5DKAA 1U6GB 2YHNA 4WZ0A 5LKUA 4AVXA 2KWJA 5FB0A 4MVTA 4A4BA 2E6SA 3N9PA 1WIMA 1JOCA 5SVIB 1BORA 2YYRA 5LKZA 2K1JA 3N9LA 3U5OA 3MDBC 2KREA 3SOUA 2CSVA 3T7LA 1WILA 2EODA 3Q1DA 1X4IA 3DPLR 3LQHA 1V87A 4LKAA 2YSJA 5SVIA 2CRRA 3LRQA 2CSZA 3U5MA 2L0BA 3MHHA 3HCTA 4AYCA 4PTBA 2FD4A 2LGLA 3FM8C 2LRIC 4R2YA 2LXHC 2JM3A 2XOCA 3O47A 3M62A 2RI7A 2YHOA 2LAUA 2QJ0A 4I7CA 2DJAA 4GB0A 2KFTA 2XEUA 2L75A 2L43A 4LK9A 4V3KC 5DINA 4FK5A 4OGEA 3V43A 2YQLA 5H9MA 5B79A 3PHDA 4L58A 2VJEA 2LGKA 4A4CA 1IYMA 4S3OB 5B8DA 4YABA 2HYED 4ZQLA 3VK6A 1WESA 3LJUX 2K4DA 3KQIA 4LADB 4YC9A 4R8PK 1DVPA 2VP7A 3O34A 5KH7A 2M3HA 5G04B 2FUUA 2MA6A 2JMJA 2KE1A 3C5KA 2LDRA 2KGGA 2ECVA 5J3XA 4FIPA 4GNFA 3ZNIA 2MT5A 4P5OB 3KV5A 3SOWA 2KR4A 5H1TA 4PPEA 2H0DA 2M85A 5TRBA 2XB1A 3E2DA 3O35A 2YU4A 4AUQB 5SVXA 3N9QA 4R7EA 5SVYA 1G25A 4C9ZA 4GNEA 1FBVA 3JUEA 2FFWA 3SOXA 4GNDA 1MBMA 4W4UA 2MNYA 4H9DA 5AITA 3M99A 3U5NA 2XOZA 2LN0A 4YADA 5H1VA 3LQJA 1MM3A 5TABA 4LLBA 5B77A 3GV4A 4AYCB 4GNGA 2PUYA 4BHWA 4FO9A 3KNVA 2RSDA 3N9NA 3L1XA 2VPDA 4WA6A 1JM7A 4O62A 4Z0OA 2QICA 2KIZA 4L7XA 5KH9A 2YQMA 3ASLA 5H1UA 3HCSA 2ECWA 2Y1MA 2CRWA 2MD8C 2CSYA 5FEYA 2KKXA 5C13A 2MA5A 2YT5A 1RMDA 2MIQA 2VJEB 3HTKC 3PLWA 3ZVZB 4IC3A 1WEEA 2ECNA 5B75A 2IDAA 3GL6A 4IC2A 1LDJB 4ZDTA 1DCQA 2ECGA 3H7HA 4YATA 3RTRB 2L80A 5I3LA 2D8SA 1VD4A 3LVQE 3T6RA 1WEWA 1WEMA 3KV6A 1CHCA 2MD7B 2UZGA 1WEPA 4LJNA 1Z60A 4OGCA 1VFYA 3M63A 4UI9B 2I50A 3PURA 5G05B 3IHPA 3EB6A 5LCWB 2H0DB 4F1PA 2ECIA 2G45A 3ZPVE 5AIUA 2Y1NA 3ZPV1 3EB5A 2E6RA 4YAXA 2OWAA 2C2LA 2OXQC 4N3WA 1Z2QA 2L5UA 3C6WA 4A49A 2FUIA 2KU3A 4YBTA 5FERA 2F42A 3O37A 3FEHA 4F52B 2ZETC 3M7KA 2EA6A 2B0OE 2KYUA 4NN2A 2JMIA 5TDRA 2M6MA 5KH3A 2G43A 2KWKA 2M1RA 2LXPC 4I7DA 1VYXA 1N87A 2MUMA 3HCUA 3MHSA 4AP4A 4O64A 4S3OC 1JM7B 1T1HA 4N4FA 3N9OA
chains in the Genus database with same CATH topology
3MDBC 2L7PA 2D8UA 2MKEA 3DWDA 3FEHA 2YVRA 3M7KA 1DCQA 2CRWA 2B0OE 3E2DA 2FD4A 4QQ4A 2CSVA 3H7HA 3FM8C 4F1PA 2IQJA 5K3QA 3LJUX 2CONA 4Z0RA 4OGEA 5SVXA 2KKXA 3Q1DA 5SVYA 3LDYA 3LVQE 2P57A 2JM3A 2XOYA 3PLWA 2M13A 2XOCA 3O47A 2XP0A 3KDEC 2EXUA 3SUBA 3JUEA 2KKYA 2FFWA 2YREA 2JUNA 2RR4A 2LAUA 2EGMA 4H9DA 2DJAA 4O62A 5SVIA 3T9KA 2CRRA 4Z0OA 5SVIB 2E61A 3DDTA 3LVRE 2OWAA 2XOZA 3FJUB 4OGCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DJA A;  2CSV A;  2D8U A;  5K3Q A;  3DDT A;  2JUN A;  2YVR A;  3Q1D A;  2EGM A; 
#chains in the Genus database with same CATH topology
 2QIZ A;  3DQV R;  2LQ6 A;  5LKX A;  2YVR A;  2ECJ A;  2AN6 A;  5LKT A;  4QQ4 A;  2CON A;  2K16 A;  4Z0R A;  1LDK C;  2P57 A;  5TDW A;  1E4U A;  3KDE C;  2PNX A;  4Q6F A;  2HDP A;  2LGV A;  3FAN A;  3T9K A;  1FP0 A;  2NAA A;  3L1Z B;  3FL2 A;  4QF3 A;  4BBQ A;  2JMD A;  2FSA A;  2VNF A;  2D8U A;  4A0C D;  2VPB A;  2EGP A;  1F62 A;  4WZ2 A;  2KWN A;  4FJC A;  4CA1 A;  3U5P A;  2YUR A;  1HYI A;  2M13 A;  3O36 A;  2JUN A;  3SHB A;  4CCG X;  3I2D A;  1Z6U A;  1WEN A;  3O33 A;  3ZTG A;  5D1L B;  2MNZ A;  3FJU B;  3LQI A;  1WEV A;  1XWH A;  1MM2 A;  5B76 A;  3RPG B;  3DWD A;  2ECT A;  2K17 A;  3NG2 A;  4MSX A;  5TBN A;  3ZVY A;  2VPG A;  2KGI A;  2G6Q A;  4I7B A;  1K2F A;  4UP0 A;  2XOY A;  1WFK A;  4XI1 A;  4B86 C;  2C2V S;  5JG6 A;  2LGG A;  5C11 A;  2LV9 A;  5D1M B;  3QZV A;  5G0F A;  1WEU A;  2BAY A;  5FB1 A;  1WGM A;  2CKL B;  2JRJ A;  2IQJ A;  5K3Q A;  4X3G A;  4TKP B;  1ZBD B;  1WEQ A;  1WEO A;  2EXU A;  3SUB A;  2RR4 A;  2YSM A;  4QF2 A;  2EGM A;  2KWO A;  4ZUX U;  3N9M A;  4B7Y C;  5EYA F;  2E61 A;  3DDT A;  1X4J A;  3L11 A;  2CT2 A;  3RPG C;  1X4U A;  2L7P A;  2YUC A;  4WZ3 B;  2VJF B;  2MKE A;  2F6N A;  2VPE A;  2CKL A;  3O70 A;  4YBM A;  2DX8 A;  3LDY A;  2Y43 A;  3PUQ A;  4V3L C;  5B78 A;  3ZYQ A;  4UP5 A;  3O7A A;  2XP0 A;  2KKY A;  2YRE A;  4YBS A;  2F6J A;  2DSM A;  3LVR E;  1HYJ A;  2VJF A;  1WE9 A;  2YW8 A;  5D1K B;  3FAO A;  5DKA A;  1U6G B;  2YHN A;  4WZ0 A;  5LKU A;  4AVX A;  2KWJ A;  5FB0 A;  4MVT A;  4A4B A;  2E6S A;  3N9P A;  1WIM A;  1JOC A;  5SVI B;  1BOR A;  2YYR A;  5LKZ A;  2K1J A;  3N9L A;  3U5O A;  3MDB C;  2KRE A;  3SOU A;  2CSV A;  3T7L A;  1WIL A;  2EOD A;  3Q1D A;  1X4I A;  3DPL R;  3LQH A;  1V87 A;  4LKA A;  2YSJ A;  5SVI A;  2CRR A;  3LRQ A;  2CSZ A;  3U5M A;  2L0B A;  3MHH A;  3HCT A;  4AYC A;  4PTB A;  2FD4 A;  2LGL A;  3FM8 C;  2LRI C;  4R2Y A;  2LXH C;  2JM3 A;  2XOC A;  3O47 A;  3M62 A;  2RI7 A;  2YHO A;  2LAU A;  2QJ0 A;  4I7C A;  2DJA A;  4GB0 A;  2KFT A;  2XEU A;  2L75 A;  2L43 A;  4LK9 A;  4V3K C;  5DIN A;  4FK5 A;  4OGE A;  3V43 A;  2YQL A;  5H9M A;  5B79 A;  3PHD A;  4L58 A;  2VJE A;  2LGK A;  4A4C A;  1IYM A;  4S3O B;  5B8D A;  4YAB A;  2HYE D;  4ZQL A;  3VK6 A;  1WES A;  3LJU X;  2K4D A;  3KQI A;  4LAD B;  4YC9 A;  4R8P K;  1DVP A;  2VP7 A;  3O34 A;  5KH7 A;  2M3H A;  5G04 B;  2FUU A;  2MA6 A;  2JMJ A;  2KE1 A;  3C5K A;  2LDR A;  2KGG A;  2ECV A;  5J3X A;  4FIP A;  4GNF A;  3ZNI A;  2MT5 A;  4P5O B;  3KV5 A;  3SOW A;  2KR4 A;  5H1T A;  4PPE A;  2H0D A;  2M85 A;  5TRB A;  2XB1 A;  3E2D A;  3O35 A;  2YU4 A;  4AUQ B;  5SVX A;  3N9Q A;  4R7E A;  5SVY A;  1G25 A;  4C9Z A;  4GNE A;  1FBV A;  3JUE A;  2FFW A;  3SOX A;  4GND A;  1MBM A;  4W4U A;  2MNY A;  4H9D A;  5AIT A;  3M99 A;  3U5N A;  2XOZ A;  2LN0 A;  4YAD A;  5H1V A;  3LQJ A;  1MM3 A;  5TAB A;  4LLB A;  5B77 A;  3GV4 A;  4AYC B;  4GNG A;  2PUY A;  4BHW A;  4FO9 A;  3KNV A;  2RSD A;  3N9N A;  3L1X A;  2VPD A;  4WA6 A;  1JM7 A;  4O62 A;  4Z0O A;  2QIC A;  2KIZ A;  4L7X A;  5KH9 A;  2YQM A;  3ASL A;  5H1U A;  3HCS A;  2ECW A;  2Y1M A;  2CRW A;  2MD8 C;  2CSY A;  5FEY A;  2KKX A;  5C13 A;  2MA5 A;  2YT5 A;  1RMD A;  2MIQ A;  2VJE B;  3HTK C;  3PLW A;  3ZVZ B;  4IC3 A;  1WEE A;  2ECN A;  5B75 A;  2IDA A;  3GL6 A;  4IC2 A;  1LDJ B;  4ZDT A;  1DCQ A;  2ECG A;  3H7H A;  4YAT A;  3RTR B;  2L80 A;  5I3L A;  2D8S A;  1VD4 A;  3LVQ E;  3T6R A;  1WEW A;  1WEM A;  3KV6 A;  1CHC A;  2MD7 B;  2UZG A;  1WEP A;  4LJN A;  1Z60 A;  4OGC A;  1VFY A;  3M63 A;  4UI9 B;  2I50 A;  3PUR A;  5G05 B;  3IHP A;  3EB6 A;  5LCW B;  2H0D B;  4F1P A;  2ECI A;  2G45 A;  3ZPV E;  5AIU A;  2Y1N A;  3ZPV 1;  3EB5 A;  2E6R A;  4YAX A;  2OWA A;  2C2L A;  2OXQ C;  4N3W A;  1Z2Q A;  2L5U A;  3C6W A;  4A49 A;  2FUI A;  2KU3 A;  4YBT A;  5FER A;  2F42 A;  3O37 A;  3FEH A;  4F52 B;  2ZET C;  3M7K A;  2EA6 A;  2B0O E;  2KYU A;  4NN2 A;  2JMI A;  5TDR A;  2M6M A;  5KH3 A;  2G43 A;  2KWK A;  2M1R A;  2LXP C;  4I7D A;  1VYX A;  1N87 A;  2MUM A;  3HCU A;  3MHS A;  4AP4 A;  4O64 A;  4S3O C;  1JM7 B;  1T1H A;  4N4F A;  3N9O A; 
#chains in the Genus database with same CATH homology
 3MDB C;  2L7P A;  2D8U A;  2MKE A;  3DWD A;  3FEH A;  2YVR A;  3M7K A;  1DCQ A;  2CRW A;  2B0O E;  3E2D A;  2FD4 A;  4QQ4 A;  2CSV A;  3H7H A;  3FM8 C;  4F1P A;  2IQJ A;  5K3Q A;  3LJU X;  2CON A;  4Z0R A;  4OGE A;  5SVX A;  2KKX A;  3Q1D A;  5SVY A;  3LDY A;  3LVQ E;  2P57 A;  2JM3 A;  2XOY A;  3PLW A;  2M13 A;  2XOC A;  3O47 A;  2XP0 A;  3KDE C;  2EXU A;  3SUB A;  3JUE A;  2KKY A;  2FFW A;  2YRE A;  2JUN A;  2RR4 A;  2LAU A;  2EGM A;  4H9D A;  2DJA A;  4O62 A;  5SVI A;  3T9K A;  2CRR A;  4Z0O A;  5SVI B;  2E61 A;  3DDT A;  3LVR E;  2OWA A;  2XOZ A;  3FJU B;  4OGC A; 
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