3LDY | Genus

Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	142
structure length	142
Chain Sequence	MTQCPRCQRNLAADEFYAGSSKMCKGCMTWQNLSYNANKEGHANTFTKATFLAWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDSFEGYSPQNARLACFICNRIKSNIFSASEMDVLGEAISKAWHGRGIA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Pseudomonas alcaligenes
publication title	Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI. pubmed doi rcsb
molecule keywords	restriction endonuclease PacI
total genus	48
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	2010-01-13

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.40.220	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Herpes Virus-1	3ldyA00

3LDYA 3M7KA
chains in the Genus database with same CATH superfamily

5B76A 1VFYA 1RMDA 2XOYA 1WE9A 3HCUA 4LADB 3VK6A 2LQ6A 2ECVA 4OGCA 2HYED 1WEUA 2YREA 5LKZA 3LQJA 4YBSA 3FM8C 3ASLA 5FERA 2XOZA 2E6SA 2KU3A 2Y1NA 3DQVR 2BAYA 1WEOA 1MBMA 4QF3A 3EB5A 2OWAA 2MNZA 2AN6A 2ECJA 4A49A 3N9QA 5H1UA 3U5PA 2KWJA 5TABA 2YU4A 2ECGA 2K16A 2MD8C 4WZ2A 4YBTA 2CKLB 3SHBA 2LGVA 4WA6A 4WZ3B 2JUNA 2LAUA 4H9DA 3C5KA 1FBVA 3HCTA 3T7LA 2JMIA 2YHOA 1MM3A 1X4JA 3KNVA 2L7PA 1DVPA 1WGMA 2LDRA 4S3OB 4UP5A 2OXQC 5SVIB 4BHWA 3I2DA 5H1TA 2E6RA 4C9ZA 1XWHA 4GNDA 5SVYA 4PTBA 4X3GA 4Z0OA 2VPBA 3M99A 3N9OA 2FUUA 4F1PA 2MA5A 2M13A 4AP4A 4AVXA 4B86C 2VNFA 4NN2A 3N9PA 2G45A 3PLWA 2CSVA 2KKXA 3U5OA 1Z2QA 5C11A 4AYCB 3ZVYA 3GL6A 1BORA 2XEUA 1IYMA 3Q1DA 5D1KB 4Z0RA 2Y1MA 1T1HA 4O64A 2L75A 2CT2A 4A4CA 1F62A 3O70A 4F52B 3ZNIA 2IDAA 2DSMA 3PUQA 2RI7A 2PUYA 3FL2A 2FSAA 2NAAA 5C13A 2VJFB 2VPDA 3O47A 2EXUA 2FD4A 3RPGB 3MDBC 3FAOA 2LN0A 4ZDTA 2JMDA 3O36A 1WEEA 5FB0A 2KKYA 1WEMA 5SVXA 2XP0A 2MA6A 1U6GB 2VP7A 4BBQA 2K1JA 4LKAA 3L1XA 2KYUA 2LGGA 4YABA 3T6RA 3JUEA 4YAXA 1JM7A 3EB6A 2L43A 1CHCA 2CSYA 4LK9A 2JRJA 1WESA 5B79A 2ECIA 4GB0A 4N3WA 4UP0A 5D1MB 2QJ0A 2CSZA 2M6MA 3DDTA 1Z60A 5B77A 2KGIA 2LGKA 5G0FA 2H0DB 2I50A 2VJEA 2C2LA 2MKEA 3KQIA 4V3LC 5TRBA 3O35A 1WEVA 2MD7B 2L5UA 5KH9A 3KDEC 1WEPA 1FP0A 5H1VA 5EYAF 1N87A 5FB1A 2JM3A 2QICA 2EGPA 2ZETC 1V87A 5KH3A 2PNXA 3ZPVE 5D1LB 2L0BA 1HYJA 3HTKC 3E2DA 5LKTA 4A0CD 1WFKA 5AIUA 1LDJB 3IHPA 4R2YA 3DWDA 5B75A 1ZBDB 4N4FA 3T9KA 5K3QA 2YW8A 4QQ4A 1LDKC 5I3LA 5FEYA 3N9LA 2LXPC 2YQLA 1JOCA 3SOWA 4S3OC 5TDRA 2YVRA 4YADA 3ZPV1 2KWNA 3U5NA 4GNFA 3LQHA 4W4UA 2KWKA 3GV4A 1G25A 2FFWA 2DJAA 3O37A 4YATA 4FIPA 2CKLA 5DKAA 4WZ0A 2M1RA 2VPGA 3KV5A 2EODA 2ECTA 3M62A 1WEQA 1WENA 2MNYA 5B8DA 3ZYQA 5AITA 2KREA 2D8SA 2KGGA 3LJUX 2DX8A 2CRWA 4ZQLA 4ZUXU 1WILA 5J3XA 2JMJA 2LV9A 2RR4A 2F42A 4L58A 4I7BA 3LVRE 5SVIA 4CA1A 3RPGC 3N9NA 2MT5A 3KV6A 2HDPA 1X4UA 3SOXA 4OGEA 4R8PK 2ECNA 2EGMA 2G6QA 3FANA 4P5OB 1E4UA 3O34A 1MM2A 2KFTA 2QIZA 3QZVA 3SOUA 4YC9A 3V43A 3L11A 2YYRA 4UI9B 2MUMA 5G05B 3H7HA 4FJCA 4AYCA 1DCQA 1K2FA 5H9MA 2F6JA 2LRIC 2KWOA 2P57A 3NG2A 1WIMA 5B78A 2XB1A 2M85A 1VYXA 2VPEA 4LJNA 3FJUB 4AUQB 5JG6A 3ZTGA 2RSDA 3LRQA 2VJFA 4I7DA 3LQIA 2C2VS 2Y43A 1WEWA 2CONA 2MIQA 5DINA 2YT5A 2K4DA 2YUCA 3N9MA 4LLBA 3L1ZB 3FEHA 4FO9A 3DPLR 4V3KC 3PHDA 3HCSA 4CCGX 4FK5A 2K17A 4L7XA 1VD4A 1X4IA 3MHSA 3SUBA 5TDWA 2G43A 4B7YC 3MHHA 3C6WA 2FUIA 2LGLA 1JM7B 2CRRA 3RTRB 2D8UA 4GNGA 2E61A 3LVQE 3U5MA 2IQJA 5KH7A 5LKUA 3M7KA 4MSXA 4Q6FA 1Z6UA 4YBMA 2YURA 4A4BA 2XOCA 2ECWA 4MVTA 4TKPB 2LXHC 2KIZA 2YSJA 3M63A 2VJEB 2YHNA 3LDYA 2H0DA 4I7CA 3O7AA 4PPEA 4IC3A 2UZGA 2F6NA 2KE1A 2KR4A 3PURA 5G04B 1HYIA 2B0OE 5TBNA 4QF2A 4XI1A 4IC2A 2YSMA 2EA6A 4R7EA 4GNEA 3O33A 2M3HA 2L80A 5LKXA 5LCWB 3ZVZB 2YQMA 4O62A
chains in the Genus database with same CATH topology

3LDYA 2EXUA 5SVIA 2YVRA 2FD4A 3H7HA 2XOYA 3MDBC 2E61A 2CONA 2MKEA 3E2DA 3LVQE 2OWAA 1DCQA 2IQJA 5SVYA 3Q1DA 3M7KA 4OGEA 2B0OE 4OGCA 3DWDA 3FEHA 2EGMA 4Z0RA 2P57A 2YREA 4Z0OA 2KKYA 3T9KA 2XOCA 3LJUX 5K3QA 3DDTA 2CRWA 2JUNA 2LAUA 4H9DA 4QQ4A 5SVIB 4F1PA 5SVXA 3KDEC 2M13A 2XP0A 2CRRA 3FM8C 2XOZA 3SUBA 3FJUB 3LVRE 2L7PA 2JM3A 2RR4A 3PLWA 4O62A 2CSVA 2KKXA 2DJAA 3O47A 3JUEA 2FFWA 2D8UA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3LDY A;  3M7K A; 
#chains in the Genus database with same CATH topology
 5B76 A;  1VFY A;  1RMD A;  2XOY A;  1WE9 A;  3HCU A;  4LAD B;  3VK6 A;  2LQ6 A;  2ECV A;  4OGC A;  2HYE D;  1WEU A;  2YRE A;  5LKZ A;  3LQJ A;  4YBS A;  3FM8 C;  3ASL A;  5FER A;  2XOZ A;  2E6S A;  2KU3 A;  2Y1N A;  3DQV R;  2BAY A;  1WEO A;  1MBM A;  4QF3 A;  3EB5 A;  2OWA A;  2MNZ A;  2AN6 A;  2ECJ A;  4A49 A;  3N9Q A;  5H1U A;  3U5P A;  2KWJ A;  5TAB A;  2YU4 A;  2ECG A;  2K16 A;  2MD8 C;  4WZ2 A;  4YBT A;  2CKL B;  3SHB A;  2LGV A;  4WA6 A;  4WZ3 B;  2JUN A;  2LAU A;  4H9D A;  3C5K A;  1FBV A;  3HCT A;  3T7L A;  2JMI A;  2YHO A;  1MM3 A;  1X4J A;  3KNV A;  2L7P A;  1DVP A;  1WGM A;  2LDR A;  4S3O B;  4UP5 A;  2OXQ C;  5SVI B;  4BHW A;  3I2D A;  5H1T A;  2E6R A;  4C9Z A;  1XWH A;  4GND A;  5SVY A;  4PTB A;  4X3G A;  4Z0O A;  2VPB A;  3M99 A;  3N9O A;  2FUU A;  4F1P A;  2MA5 A;  2M13 A;  4AP4 A;  4AVX A;  4B86 C;  2VNF A;  4NN2 A;  3N9P A;  2G45 A;  3PLW A;  2CSV A;  2KKX A;  3U5O A;  1Z2Q A;  5C11 A;  4AYC B;  3ZVY A;  3GL6 A;  1BOR A;  2XEU A;  1IYM A;  3Q1D A;  5D1K B;  4Z0R A;  2Y1M A;  1T1H A;  4O64 A;  2L75 A;  2CT2 A;  4A4C A;  1F62 A;  3O70 A;  4F52 B;  3ZNI A;  2IDA A;  2DSM A;  3PUQ A;  2RI7 A;  2PUY A;  3FL2 A;  2FSA A;  2NAA A;  5C13 A;  2VJF B;  2VPD A;  3O47 A;  2EXU A;  2FD4 A;  3RPG B;  3MDB C;  3FAO A;  2LN0 A;  4ZDT A;  2JMD A;  3O36 A;  1WEE A;  5FB0 A;  2KKY A;  1WEM A;  5SVX A;  2XP0 A;  2MA6 A;  1U6G B;  2VP7 A;  4BBQ A;  2K1J A;  4LKA A;  3L1X A;  2KYU A;  2LGG A;  4YAB A;  3T6R A;  3JUE A;  4YAX A;  1JM7 A;  3EB6 A;  2L43 A;  1CHC A;  2CSY A;  4LK9 A;  2JRJ A;  1WES A;  5B79 A;  2ECI A;  4GB0 A;  4N3W A;  4UP0 A;  5D1M B;  2QJ0 A;  2CSZ A;  2M6M A;  3DDT A;  1Z60 A;  5B77 A;  2KGI A;  2LGK A;  5G0F A;  2H0D B;  2I50 A;  2VJE A;  2C2L A;  2MKE A;  3KQI A;  4V3L C;  5TRB A;  3O35 A;  1WEV A;  2MD7 B;  2L5U A;  5KH9 A;  3KDE C;  1WEP A;  1FP0 A;  5H1V A;  5EYA F;  1N87 A;  5FB1 A;  2JM3 A;  2QIC A;  2EGP A;  2ZET C;  1V87 A;  5KH3 A;  2PNX A;  3ZPV E;  5D1L B;  2L0B A;  1HYJ A;  3HTK C;  3E2D A;  5LKT A;  4A0C D;  1WFK A;  5AIU A;  1LDJ B;  3IHP A;  4R2Y A;  3DWD A;  5B75 A;  1ZBD B;  4N4F A;  3T9K A;  5K3Q A;  2YW8 A;  4QQ4 A;  1LDK C;  5I3L A;  5FEY A;  3N9L A;  2LXP C;  2YQL A;  1JOC A;  3SOW A;  4S3O C;  5TDR A;  2YVR A;  4YAD A;  3ZPV 1;  2KWN A;  3U5N A;  4GNF A;  3LQH A;  4W4U A;  2KWK A;  3GV4 A;  1G25 A;  2FFW A;  2DJA A;  3O37 A;  4YAT A;  4FIP A;  2CKL A;  5DKA A;  4WZ0 A;  2M1R A;  2VPG A;  3KV5 A;  2EOD A;  2ECT A;  3M62 A;  1WEQ A;  1WEN A;  2MNY A;  5B8D A;  3ZYQ A;  5AIT A;  2KRE A;  2D8S A;  2KGG A;  3LJU X;  2DX8 A;  2CRW A;  4ZQL A;  4ZUX U;  1WIL A;  5J3X A;  2JMJ A;  2LV9 A;  2RR4 A;  2F42 A;  4L58 A;  4I7B A;  3LVR E;  5SVI A;  4CA1 A;  3RPG C;  3N9N A;  2MT5 A;  3KV6 A;  2HDP A;  1X4U A;  3SOX A;  4OGE A;  4R8P K;  2ECN A;  2EGM A;  2G6Q A;  3FAN A;  4P5O B;  1E4U A;  3O34 A;  1MM2 A;  2KFT A;  2QIZ A;  3QZV A;  3SOU A;  4YC9 A;  3V43 A;  3L11 A;  2YYR A;  4UI9 B;  2MUM A;  5G05 B;  3H7H A;  4FJC A;  4AYC A;  1DCQ A;  1K2F A;  5H9M A;  2F6J A;  2LRI C;  2KWO A;  2P57 A;  3NG2 A;  1WIM A;  5B78 A;  2XB1 A;  2M85 A;  1VYX A;  2VPE A;  4LJN A;  3FJU B;  4AUQ B;  5JG6 A;  3ZTG A;  2RSD A;  3LRQ A;  2VJF A;  4I7D A;  3LQI A;  2C2V S;  2Y43 A;  1WEW A;  2CON A;  2MIQ A;  5DIN A;  2YT5 A;  2K4D A;  2YUC A;  3N9M A;  4LLB A;  3L1Z B;  3FEH A;  4FO9 A;  3DPL R;  4V3K C;  3PHD A;  3HCS A;  4CCG X;  4FK5 A;  2K17 A;  4L7X A;  1VD4 A;  1X4I A;  3MHS A;  3SUB A;  5TDW A;  2G43 A;  4B7Y C;  3MHH A;  3C6W A;  2FUI A;  2LGL A;  1JM7 B;  2CRR A;  3RTR B;  2D8U A;  4GNG A;  2E61 A;  3LVQ E;  3U5M A;  2IQJ A;  5KH7 A;  5LKU A;  3M7K A;  4MSX A;  4Q6F A;  1Z6U A;  4YBM A;  2YUR A;  4A4B A;  2XOC A;  2ECW A;  4MVT A;  4TKP B;  2LXH C;  2KIZ A;  2YSJ A;  3M63 A;  2VJE B;  2YHN A;  3LDY A;  2H0D A;  4I7C A;  3O7A A;  4PPE A;  4IC3 A;  2UZG A;  2F6N A;  2KE1 A;  2KR4 A;  3PUR A;  5G04 B;  1HYI A;  2B0O E;  5TBN A;  4QF2 A;  4XI1 A;  4IC2 A;  2YSM A;  2EA6 A;  4R7E A;  4GNE A;  3O33 A;  2M3H A;  2L80 A;  5LKX A;  5LCW B;  3ZVZ B;  2YQM A;  4O62 A; 
#chains in the Genus database with same CATH homology
 3LDY A;  2EXU A;  5SVI A;  2YVR A;  2FD4 A;  3H7H A;  2XOY A;  3MDB C;  2E61 A;  2CON A;  2MKE A;  3E2D A;  3LVQ E;  2OWA A;  1DCQ A;  2IQJ A;  5SVY A;  3Q1D A;  3M7K A;  4OGE A;  2B0O E;  4OGC A;  3DWD A;  3FEH A;  2EGM A;  4Z0R A;  2P57 A;  2YRE A;  4Z0O A;  2KKY A;  3T9K A;  2XOC A;  3LJU X;  5K3Q A;  3DDT A;  2CRW A;  2JUN A;  2LAU A;  4H9D A;  4QQ4 A;  5SVI B;  4F1P A;  5SVX A;  3KDE C;  2M13 A;  2XP0 A;  2CRR A;  3FM8 C;  2XOZ A;  3SUB A;  3FJU B;  3LVR E;  2L7P A;  2JM3 A;  2RR4 A;  3PLW A;  4O62 A;  2CSV A;  2KKX A;  2DJA A;  3O47 A;  3JUE A;  2FFW A;  2D8U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LDYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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