3M7K | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	142
structure length	142
Chain Sequence	MTQCPRCQRNLAADEFYAGSSKMCKGCMTWQNLSYNANKEGHANTFTKATFLAWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDSFEGYSPQNARLACFICNRIKSNIFSASEMDVLGEAISKAWHGRGIA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Pseudomonas alcaligenes
publication title	Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI. pubmed doi rcsb
molecule keywords	restriction endonuclease PacI
total genus	46
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	2010-03-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.40.220	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Herpes Virus-1	3m7kA00

3M7KA 3LDYA
chains in the Genus database with same CATH superfamily

4LLBA 2C2VS 4I7BA 5FERA 3LVQE 1N87A 2G43A 3LJUX 1HYJA 2MUMA 3U5NA 2ZETC 2Y43A 2LGGA 2F6NA 4F52B 2EXUA 2YHNA 2KWJA 2K16A 3N9PA 1XWHA 3O36A 3FL2A 5SVIB 5TABA 4R7EA 3SOWA 1U6GB 5H9MA 4WZ3B 3MDBC 3O33A 5LKUA 4N4FA 4WA6A 2ECIA 3FEHA 2VJEA 3L11A 1X4UA 5LKTA 2DJAA 2F42A 4QF2A 3KV6A 3PUQA 3FANA 3M62A 4IC2A 2LGVA 2MD7B 2KKYA 4UP0A 2L80A 3N9LA 2YURA 3O37A 2M1RA 4A0CD 4AYCB 1FBVA 2OWAA 2HYED 2LXPC 3LRQA 2F6JA 2IQJA 4O62A 1WEVA 2BAYA 2MD8C 2JM3A 2JUNA 3O7AA 3DDTA 5D1MB 2JRJA 4V3LC 4LKAA 1MBMA 2E61A 2YSJA 4ZDTA 3KNVA 4S3OB 3N9OA 4B7YC 4R8PK 2YYRA 4BBQA 2HDPA 4WZ2A 2YSMA 5AIUA 4F1PA 5KH7A 1DVPA 4X3GA 3NG2A 2QJ0A 5DINA 5LCWB 1WFKA 3SOUA 2Y1MA 3PHDA 3U5PA 1WEWA 3Q1DA 1G25A 2JMDA 2LRIC 3O35A 1VD4A 3HCUA 4WZ0A 1WILA 2LGKA 2G6QA 2XOYA 4Z0OA 3FAOA 2CONA 3O47A 3LDYA 2YQMA 2DX8A 2E6RA 5G05B 4YBTA 4FIPA 4S3OC 2UZGA 2FFWA 2YHOA 2M3HA 3FJUB 4LJNA 3RTRB 5G0FA 3LQJA 3EB6A 2XP0A 4LK9A 2L5UA 4AUQB 2YT5A 2KE1A 3N9NA 4OGCA 5B8DA 2MA6A 3SOXA 3I2DA 4BHWA 2Y1NA 2MNZA 4UI9B 5H1TA 2YW8A 1JM7A 3V43A 2KYUA 2VP7A 5B75A 3DPLR 4GNGA 4CCGX 4GNDA 4YAXA 2PUYA 1WESA 3KDEC 1ZBDB 3PLWA 1LDKC 4H9DA 4A4CA 2KREA 3M63A 4NN2A 3IHPA 1VFYA 5J3XA 4AP4A 1VYXA 2CKLA 3KQIA 2KWKA 5TDWA 5G04B 3N9MA 4MSXA 3T9KA 3U5MA 1Z2QA 2XEUA 2KKXA 3GV4A 2L0BA 2D8UA 5I3LA 4A4BA 2VJFA 3SUBA 2EODA 3MHSA 3RPGB 2YVRA 2YQLA 4I7CA 2MKEA 2CSZA 1Z6UA 2CSYA 2RR4A 2LXHC 3HTKC 3C6WA 2K4DA 2FSAA 2K1JA 1WEOA 3ZPV1 4O64A 2P57A 1WEQA 4YBSA 2VPGA 5H1VA 5C11A 4QF3A 5B79A 4GB0A 1BORA 2VJEB 1FP0A 4MVTA 2CKLB 3H7HA 2H0DA 4YC9A 3U5OA 4PTBA 2QIZA 1X4IA 3QZVA 1WEPA 5LKXA 2C2LA 1HYIA 2FUIA 2JMJA 3M7KA 4Q6FA 3RPGC 4R2YA 4C9ZA 2G45A 5TBNA 3KV5A 5KH3A 2IDAA 2VJFB 5H1UA 4UP5A 5SVXA 2L7PA 4GNFA 4N3WA 5FB1A 5B76A 3M99A 3ZVYA 3HCTA 4FO9A 3SHBA 3EB5A 4IC3A 4OGEA 4ZUXU 2LV9A 5FB0A 1X4JA 5JG6A 2ECTA 2KGIA 2B0OE 2CRRA 2VPDA 2EGMA 3ZPVE 2KGGA 2M13A 4B86C 2ECNA 2AN6A 3ZYQA 2LGLA 3JUEA 2KIZA 2XOZA 5SVYA 2H0DB 2MIQA 2QICA 2KWNA 3HCSA 2XB1A 3ZTGA 3ZVZB 3O70A 4TKPB 4I7DA 4L7XA 1IYMA 1WIMA 2L43A 2ECGA 1MM3A 3VK6A 4PPEA 3E2DA 2CT2A 1F62A 2KWOA 1LDJB 2XOCA 2M6MA 1Z60A 4YABA 1CHCA 1JOCA 5D1LB 4ZQLA 3N9QA 3O34A 5KH9A 4FK5A 1WEEA 2MT5A 1V87A 2LQ6A 2E6SA 5FEYA 2PNXA 5LKZA 2CRWA 5TRBA 2FD4A 2M85A 4YADA 4FJCA 3DQVR 2ECVA 2VPEA 2ECWA 2KU3A 4GNEA 5C13A 2NAAA 2VPBA 2OXQC 2LN0A 3GL6A 2KR4A 1MM2A 2JMIA 1JM7B 2LAUA 2YUCA 1T1HA 3PURA 1WGMA 5K3QA 2MA5A 2EA6A 3DWDA 1RMDA 2YREA 2K17A 2LDRA 1K2FA 5AITA 2RSDA 3T6RA 4Z0RA 3L1ZB 4CA1A 4YATA 2KFTA 1E4UA 4V3KC 1DCQA 3ASLA 5B77A 3LVRE 5D1KB 4XI1A 3C5KA 3MHHA 3LQIA 1WEUA 2RI7A 4A49A 5SVIA 5TDRA 2EGPA 5EYAF 4QQ4A 4W4UA 2D8SA 2I50A 1WE9A 3FM8C 2YU4A 3LQHA 3L1XA 5B78A 2CSVA 3T7LA 2ECJA 4P5OB 1WEMA 4YBMA 4LADB 2MNYA 2VNFA 2L75A 4AVXA 1WENA 3ZNIA 4AYCA 4L58A 2FUUA 5DKAA 2DSMA
chains in the Genus database with same CATH topology

2LAUA 3KDEC 2XOYA 4Z0OA 3MDBC 2D8UA 3PLWA 2XP0A 3M7KA 2OWAA 2CONA 3FM8C 3O47A 4H9DA 5K3QA 2P57A 1DCQA 3LVQE 2IQJA 2B0OE 2CRRA 3FEHA 3LJUX 4F1PA 4O62A 3LVRE 3SUBA 2EGMA 3LDYA 3DWDA 4OGCA 2YREA 2CRWA 3E2DA 2DJAA 2CSVA 2FD4A 2M13A 5SVXA 2JM3A 2JUNA 2L7PA 2YVRA 3JUEA 2MKEA 3H7HA 3DDTA 3T9KA 2KKYA 2RR4A 5SVIA 3Q1DA 2EXUA 2XOCA 2XOZA 5SVYA 2FFWA 4Z0RA 4QQ4A 2E61A 2KKXA 5SVIB 3FJUB 4OGEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3M7K A;  3LDY A; 
#chains in the Genus database with same CATH topology
 4LLB A;  2C2V S;  4I7B A;  5FER A;  3LVQ E;  1N87 A;  2G43 A;  3LJU X;  1HYJ A;  2MUM A;  3U5N A;  2ZET C;  2Y43 A;  2LGG A;  2F6N A;  4F52 B;  2EXU A;  2YHN A;  2KWJ A;  2K16 A;  3N9P A;  1XWH A;  3O36 A;  3FL2 A;  5SVI B;  5TAB A;  4R7E A;  3SOW A;  1U6G B;  5H9M A;  4WZ3 B;  3MDB C;  3O33 A;  5LKU A;  4N4F A;  4WA6 A;  2ECI A;  3FEH A;  2VJE A;  3L11 A;  1X4U A;  5LKT A;  2DJA A;  2F42 A;  4QF2 A;  3KV6 A;  3PUQ A;  3FAN A;  3M62 A;  4IC2 A;  2LGV A;  2MD7 B;  2KKY A;  4UP0 A;  2L80 A;  3N9L A;  2YUR A;  3O37 A;  2M1R A;  4A0C D;  4AYC B;  1FBV A;  2OWA A;  2HYE D;  2LXP C;  3LRQ A;  2F6J A;  2IQJ A;  4O62 A;  1WEV A;  2BAY A;  2MD8 C;  2JM3 A;  2JUN A;  3O7A A;  3DDT A;  5D1M B;  2JRJ A;  4V3L C;  4LKA A;  1MBM A;  2E61 A;  2YSJ A;  4ZDT A;  3KNV A;  4S3O B;  3N9O A;  4B7Y C;  4R8P K;  2YYR A;  4BBQ A;  2HDP A;  4WZ2 A;  2YSM A;  5AIU A;  4F1P A;  5KH7 A;  1DVP A;  4X3G A;  3NG2 A;  2QJ0 A;  5DIN A;  5LCW B;  1WFK A;  3SOU A;  2Y1M A;  3PHD A;  3U5P A;  1WEW A;  3Q1D A;  1G25 A;  2JMD A;  2LRI C;  3O35 A;  1VD4 A;  3HCU A;  4WZ0 A;  1WIL A;  2LGK A;  2G6Q A;  2XOY A;  4Z0O A;  3FAO A;  2CON A;  3O47 A;  3LDY A;  2YQM A;  2DX8 A;  2E6R A;  5G05 B;  4YBT A;  4FIP A;  4S3O C;  2UZG A;  2FFW A;  2YHO A;  2M3H A;  3FJU B;  4LJN A;  3RTR B;  5G0F A;  3LQJ A;  3EB6 A;  2XP0 A;  4LK9 A;  2L5U A;  4AUQ B;  2YT5 A;  2KE1 A;  3N9N A;  4OGC A;  5B8D A;  2MA6 A;  3SOX A;  3I2D A;  4BHW A;  2Y1N A;  2MNZ A;  4UI9 B;  5H1T A;  2YW8 A;  1JM7 A;  3V43 A;  2KYU A;  2VP7 A;  5B75 A;  3DPL R;  4GNG A;  4CCG X;  4GND A;  4YAX A;  2PUY A;  1WES A;  3KDE C;  1ZBD B;  3PLW A;  1LDK C;  4H9D A;  4A4C A;  2KRE A;  3M63 A;  4NN2 A;  3IHP A;  1VFY A;  5J3X A;  4AP4 A;  1VYX A;  2CKL A;  3KQI A;  2KWK A;  5TDW A;  5G04 B;  3N9M A;  4MSX A;  3T9K A;  3U5M A;  1Z2Q A;  2XEU A;  2KKX A;  3GV4 A;  2L0B A;  2D8U A;  5I3L A;  4A4B A;  2VJF A;  3SUB A;  2EOD A;  3MHS A;  3RPG B;  2YVR A;  2YQL A;  4I7C A;  2MKE A;  2CSZ A;  1Z6U A;  2CSY A;  2RR4 A;  2LXH C;  3HTK C;  3C6W A;  2K4D A;  2FSA A;  2K1J A;  1WEO A;  3ZPV 1;  4O64 A;  2P57 A;  1WEQ A;  4YBS A;  2VPG A;  5H1V A;  5C11 A;  4QF3 A;  5B79 A;  4GB0 A;  1BOR A;  2VJE B;  1FP0 A;  4MVT A;  2CKL B;  3H7H A;  2H0D A;  4YC9 A;  3U5O A;  4PTB A;  2QIZ A;  1X4I A;  3QZV A;  1WEP A;  5LKX A;  2C2L A;  1HYI A;  2FUI A;  2JMJ A;  3M7K A;  4Q6F A;  3RPG C;  4R2Y A;  4C9Z A;  2G45 A;  5TBN A;  3KV5 A;  5KH3 A;  2IDA A;  2VJF B;  5H1U A;  4UP5 A;  5SVX A;  2L7P A;  4GNF A;  4N3W A;  5FB1 A;  5B76 A;  3M99 A;  3ZVY A;  3HCT A;  4FO9 A;  3SHB A;  3EB5 A;  4IC3 A;  4OGE A;  4ZUX U;  2LV9 A;  5FB0 A;  1X4J A;  5JG6 A;  2ECT A;  2KGI A;  2B0O E;  2CRR A;  2VPD A;  2EGM A;  3ZPV E;  2KGG A;  2M13 A;  4B86 C;  2ECN A;  2AN6 A;  3ZYQ A;  2LGL A;  3JUE A;  2KIZ A;  2XOZ A;  5SVY A;  2H0D B;  2MIQ A;  2QIC A;  2KWN A;  3HCS A;  2XB1 A;  3ZTG A;  3ZVZ B;  3O70 A;  4TKP B;  4I7D A;  4L7X A;  1IYM A;  1WIM A;  2L43 A;  2ECG A;  1MM3 A;  3VK6 A;  4PPE A;  3E2D A;  2CT2 A;  1F62 A;  2KWO A;  1LDJ B;  2XOC A;  2M6M A;  1Z60 A;  4YAB A;  1CHC A;  1JOC A;  5D1L B;  4ZQL A;  3N9Q A;  3O34 A;  5KH9 A;  4FK5 A;  1WEE A;  2MT5 A;  1V87 A;  2LQ6 A;  2E6S A;  5FEY A;  2PNX A;  5LKZ A;  2CRW A;  5TRB A;  2FD4 A;  2M85 A;  4YAD A;  4FJC A;  3DQV R;  2ECV A;  2VPE A;  2ECW A;  2KU3 A;  4GNE A;  5C13 A;  2NAA A;  2VPB A;  2OXQ C;  2LN0 A;  3GL6 A;  2KR4 A;  1MM2 A;  2JMI A;  1JM7 B;  2LAU A;  2YUC A;  1T1H A;  3PUR A;  1WGM A;  5K3Q A;  2MA5 A;  2EA6 A;  3DWD A;  1RMD A;  2YRE A;  2K17 A;  2LDR A;  1K2F A;  5AIT A;  2RSD A;  3T6R A;  4Z0R A;  3L1Z B;  4CA1 A;  4YAT A;  2KFT A;  1E4U A;  4V3K C;  1DCQ A;  3ASL A;  5B77 A;  3LVR E;  5D1K B;  4XI1 A;  3C5K A;  3MHH A;  3LQI A;  1WEU A;  2RI7 A;  4A49 A;  5SVI A;  5TDR A;  2EGP A;  5EYA F;  4QQ4 A;  4W4U A;  2D8S A;  2I50 A;  1WE9 A;  3FM8 C;  2YU4 A;  3LQH A;  3L1X A;  5B78 A;  2CSV A;  3T7L A;  2ECJ A;  4P5O B;  1WEM A;  4YBM A;  4LAD B;  2MNY A;  2VNF A;  2L75 A;  4AVX A;  1WEN A;  3ZNI A;  4AYC A;  4L58 A;  2FUU A;  5DKA A;  2DSM A; 
#chains in the Genus database with same CATH homology
 2LAU A;  3KDE C;  2XOY A;  4Z0O A;  3MDB C;  2D8U A;  3PLW A;  2XP0 A;  3M7K A;  2OWA A;  2CON A;  3FM8 C;  3O47 A;  4H9D A;  5K3Q A;  2P57 A;  1DCQ A;  3LVQ E;  2IQJ A;  2B0O E;  2CRR A;  3FEH A;  3LJU X;  4F1P A;  4O62 A;  3LVR E;  3SUB A;  2EGM A;  3LDY A;  3DWD A;  4OGC A;  2YRE A;  2CRW A;  3E2D A;  2DJA A;  2CSV A;  2FD4 A;  2M13 A;  5SVX A;  2JM3 A;  2JUN A;  2L7P A;  2YVR A;  3JUE A;  2MKE A;  3H7H A;  3DDT A;  3T9K A;  2KKY A;  2RR4 A;  5SVI A;  3Q1D A;  2EXU A;  2XOC A;  2XOZ A;  5SVY A;  2FFW A;  4Z0R A;  4QQ4 A;  2E61 A;  2KKX A;  5SVI B;  3FJU B;  4OGE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3M7KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN