The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
11
|
sequence length |
43
|
structure length |
43
|
Chain Sequence |
VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEEV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the Trim5 alpha Bbox2 domain from rhesus macaques describes a plastic oligomerisation interface.
pubmed doi rcsb |
| molecule keywords |
Tripartite motif-containing protein 5,Tripartite motif-conta
|
| molecule tags |
Ligase
|
| source organism |
Macaca mulatta
|
| total genus |
11
|
| structure length |
43
|
| sequence length |
43
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2016-05-19 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Herpes Virus-1 |
#chains in the Genus database with same CATH superfamily 2DJA A; 2YVR A; 3Q1D A; 5K3Q A; 2JUN A; 2CSV A; 2EGM A; 2D8U A; 3DDT A; #chains in the Genus database with same CATH topology 2CON A; 2XEU A; 3L11 A; 4A4C A; 2XOY A; 2JMJ A; 2NAA A; 3ZNI A; 4ZDT A; 2CKL B; 3ZPV 1; 2YT5 A; 4YAT A; 2D8S A; 2LQ6 A; 1WEV A; 3M62 A; 3MDB C; 1CHC A; 2YHN A; 2EGP A; 4R8P K; 3MHS A; 2EXU A; 2JM3 A; 4AP4 A; 4WZ3 B; 1F62 A; 3N9P A; 2KR4 A; 4LAD B; 2VJF B; 4O62 A; 3PHD A; 2Y1N A; 2MA5 A; 4B7Y C; 4A4B A; 2UZG A; 1WIL A; 5B75 A; 2KFT A; 5JG6 A; 3PUQ A; 2LGV A; 4R7E A; 5LKZ A; 4YAB A; 2LGG A; 2K4D A; 2E6S A; 5FB1 A; 1JM7 A; 1Z60 A; 2JMD A; 2OWA A; 3LQJ A; 3LQH A; 1LDK C; 3SOX A; 2K1J A; 4WZ0 A; 2VNF A; 4LKA A; 2RSD A; 2G45 A; 3KV6 A; 5EYA F; 4PPE A; 5B79 A; 2M85 A; 3U5N A; 1WEU A; 4YBM A; 2CRR A; 2LGK A; 2IQJ A; 4Z0R A; 3O70 A; 2MT5 A; 3O47 A; 1MM3 A; 2B0O E; 2C2V S; 4YAD A; 3ZVZ B; 4S3O C; 2FUI A; 5J3X A; 3LRQ A; 1JM7 B; 2YSM A; 1XWH A; 3DWD A; 5SVI A; 2ECI A; 5SVX A; 3HCU A; 4CA1 A; 2HDP A; 1X4J A; 3IHP A; 2L80 A; 3SOW A; 3ZYQ A; 4Z0O A; 3O33 A; 2LN0 A; 2ECW A; 2EGM A; 3T6R A; 5DKA A; 2CT2 A; 2KKX A; 2QJ0 A; 2LV9 A; 2MD8 C; 1WEO A; 2VPD A; 4R2Y A; 5KH9 A; 5K3Q A; 3PUR A; 4Q6F A; 4ZUX U; 2ECN A; 2KU3 A; 5AIT A; 2E61 A; 2L75 A; 4I7D A; 4LLB A; 4FIP A; 3KV5 A; 5KH3 A; 5LKU A; 3MHH A; 3KDE C; 2AN6 A; 4WZ2 A; 5G04 B; 1WEE A; 2QIZ A; 3O35 A; 2KIZ A; 5B8D A; 3NG2 A; 2C2L A; 3V43 A; 2F42 A; 2L0B A; 3ZTG A; 2G43 A; 2ECG A; 2PNX A; 2KWJ A; 3RPG C; 3FM8 C; 2I50 A; 2D8U A; 3KQI A; 4O64 A; 4S3O B; 5C11 A; 4UI9 B; 1HYJ A; 4ZQL A; 2OXQ C; 4WA6 A; 2M3H A; 3PLW A; 1RMD A; 4A0C D; 4V3L C; 2KYU A; 2YU4 A; 4LJN A; 5SVY A; 5D1M B; 4IC3 A; 3DPL R; 1IYM A; 1MBM A; 4QQ4 A; 3JUE A; 3EB5 A; 1Z6U A; 1DCQ A; 1U6G B; 1WEP A; 2YQL A; 5LKX A; 2VJE A; 1X4U A; 5FEY A; 2KWN A; 2CSV A; 2YQM A; 2L7P A; 5C13 A; 2MA6 A; 2YUR A; 2G6Q A; 3C5K A; 2IDA A; 3LVR E; 2CRW A; 2JMI A; 2E6R A; 2JUN A; 2LAU A; 3RTR B; 4YC9 A; 4V3K C; 2LGL A; 2KKY A; 1V87 A; 2QIC A; 1WES A; 2F6J A; 3QZV A; 4XI1 A; 5H1V A; 1T1H A; 4UP5 A; 4GNE A; 3LDY A; 4I7C A; 4L7X A; 3SOU A; 4H9D A; 2XB1 A; 3LVQ E; 3M7K A; 4OGC A; 5AIU A; 1WEW A; 5LCW B; 5H1U A; 5LKT A; 3HTK C; 4TKP B; 1WEN A; 2Y43 A; 1FBV A; 3FJU B; 2CSZ A; 3N9L A; 4F52 B; 2FSA A; 2K17 A; 3N9O A; 4AVX A; 2VPB A; 1K2F A; 4MVT A; 5SVI B; 5KH7 A; 2ZET C; 2YUC A; 4AYC A; 2XOZ A; 3ZPV E; 3U5P A; 3DDT A; 4LK9 A; 1VYX A; 3Q1D A; 3U5M A; 3EB6 A; 2YSJ A; 1VFY A; 1BOR A; 2M1R A; 3I2D A; 5TDW A; 2MIQ A; 4C9Z A; 2CKL A; 5TAB A; 3T7L A; 5B77 A; 4GND A; 2L5U A; 2BAY A; 2MNY A; 2KGI A; 3H7H A; 4A49 A; 1MM2 A; 3HCS A; 5DIN A; 4FK5 A; 3FL2 A; 3N9N A; 2VJF A; 3LQI A; 2MNZ A; 2DX8 A; 2VPG A; 2ECJ A; 2KWK A; 3ASL A; 3DQV R; 4PTB A; 1N87 A; 3T9K A; 1Z2Q A; 4I7B A; 3HCT A; 5I3L A; 2ECT A; 5D1K B; 2EA6 A; 4NN2 A; 4QF3 A; 3C6W A; 5B78 A; 4F1P A; 4N3W A; 3O34 A; 2YHO A; 5TRB A; 2F6N A; 2FD4 A; 2PUY A; 2DJA A; 2HYE D; 2ECV A; 3L1X A; 2MD7 B; 3VK6 A; 5TDR A; 4UP0 A; 4BBQ A; 4GNG A; 1JOC A; 1WIM A; 1WFK A; 2VP7 A; 3E2D A; 2LRI C; 2MUM A; 1X4I A; 1ZBD B; 5D1L B; 4YBT A; 4YBS A; 5H9M A; 1HYI A; 4GB0 A; 2M13 A; 1WEQ A; 2Y1M A; 3GV4 A; 4P5O B; 5H1T A; 2YRE A; 2YW8 A; 2VJE B; 2KWO A; 1E4U A; 3M99 A; 4N4F A; 4CCG X; 5G05 B; 3SHB A; 3RPG B; 3LJU X; 5FER A; 2L43 A; 2JRJ A; 4L58 A; 4B86 C; 3M63 A; 1WGM A; 2KGG A; 4FO9 A; 2H0D A; 2LXP C; 4AUQ B; 3SUB A; 5G0F A; 2K16 A; 2XP0 A; 4MSX A; 1WE9 A; 2MKE A; 3O36 A; 1WEM A; 2M6M A; 3N9M A; 3FAO A; 3O7A A; 3ZVY A; 2EOD A; 5B76 A; 2XOC A; 3N9Q A; 3FAN A; 1FP0 A; 2LDR A; 2P57 A; 3KNV A; 2FFW A; 2RR4 A; 5TBN A; 3U5O A; 2LXH C; 2H0D B; 3L1Z B; 2VPE A; 2YVR A; 4FJC A; 2RI7 A; 3FEH A; 5FB0 A; 2DSM A; 2CSY A; 4GNF A; 1DVP A; 1VD4 A; 4IC2 A; 4QF2 A; 2KRE A; 1G25 A; 3O37 A; 4X3G A; 4YAX A; 4AYC B; 2FUU A; 4BHW A; 4W4U A; 4OGE A; 2KE1 A; 2YYR A; 3GL6 A; 1LDJ B; #chains in the Genus database with same CATH homology 2CON A; 2DJA A; 2YVR A; 3LVR E; 5SVX A; 2XOY A; 5SVY A; 3T9K A; 2CRW A; 4H9D A; 3FEH A; 3LVQ E; 5K3Q A; 5SVI B; 2CRR A; 3M7K A; 2JUN A; 2LAU A; 2XOC A; 2IQJ A; 4Z0R A; 3LJU X; 4OGC A; 2XOZ A; 4QQ4 A; 3FM8 C; 2D8U A; 2E61 A; 3DDT A; 3MDB C; 3JUE A; 2KKY A; 4O62 A; 4Z0O A; 3H7H A; 1DCQ A; 2P57 A; 3E2D A; 3O47 A; 3Q1D A; 2B0O E; 2EXU A; 2FFW A; 2EGM A; 2RR4 A; 4F1P A; 2OWA A; 3KDE C; 2JM3 A; 3SUB A; 2XP0 A; 4OGE A; 2CSV A; 2FD4 A; 3FJU B; 2KKX A; 2M13 A; 2MKE A; 2L7P A; 2YRE A; 3DWD A; 3LDY A; 5SVI A; 3PLW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
