2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-24)TI1 (24-27)O1 (27-29)TII1 (29-32)AH2 (32-41)3H1 (47-49)EMPTY3H3 (96-98)TI2 (51-54)TIV2 (93-96)S1 (54-55)TI4 (66-69)S7 (117-126)TII4 (112-115)TIV1 (55-59)S2 (60-65)3H2 (79-81)S3 (71-77)TI5 (90-93)TII2 (99-102)TII3 (103-106)TI3 (65-68)S4 (88-90)S5 (102-103)S6 (106-111)Updating...
connected with : NaN
molecule tags Transcription
source organism Nitrosomonas europaea
publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
molecule keywords Prokaryotic transcription elongation factor GreA/GreB
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
2EULA 2PN0A 2F23A 3BMBA 2P4VA 1TFEA 1GRJA 1AIPC 3GU0A 3GTYX 1EFUB 2ETNA 4Q7JA
chains in the Genus database with same CATH superfamily
1T11A 2MNTA 4ITZA 1CTNA 4WIWA 3AQUA 3O5QA 5DIUA 2G8ZA 4WKHA 2PBCA 1FKSA 4LAWA 1OGGA 3CHCA 2XP9A 3LW5G 3O5EA 4DWSB 2P11A 2F23A 1N3RA 2B5UB 3AROA 3O5MA 4TX0A 1E6RA 3O5FA 3VEJA 2WSFK 4DRJA 2OLHA 4U85A 5I98A 3QOKA 1NWUA 4NE3B 3O5DA 1NSGA 2XPBA 4DU6A 1W1TA 1ZBVA 1X6NA 1L1PA 1FKLA 2ZR6A 4E44B 1O6IA 1IX5A 4GGQA 1NH6A 4L3NA 5HWCA 4N19A 1WUQA 4DRMA 5HUAA 4DRAE 4TW8A 2DSZA 3UF8A 1H0IA 3VAWA 1FKHA 2PPPA 1FKRA 3KAFA 1HKMA 1HKJA 2KFWA 4R0XA 2MLZA 4ZPTR 4ZPWR 2WSEK 4ODQA 4NZCA 1FFRA 1EDQA 2A3EA 2PPOA 3I6CA 3B0BC 2LO0A 1OGBA 2MF9A 3CZ8A 4AY1A 4QT2A 3WD2A 1ZBKA 1PBKA 2ZQVA 1W9PA 2PV3A 2VN1A 4ODKA 4DRIA 4ODOA 4MSPA 2ZR4A 4Z2JA 5HTGA 1Q6HA 2WSCK 3EY6A 3G6MA 3ARSA 3BXWA 4QZVB 1FD9A 1ZBCA 3B9AA 4S3JA 3FY1A 2O9OA 4JFIA 4Z2HA 1KFWA 2Q5AA 3LUOA 4NE5B 2AWGA 4G50A 4U84A 4JFKA 4E45B 1FKIA 1UR9A 2FAPA 2O92A 1XRVA 3LW5K 3O5PA 3CHFA 2K8IA 1C9HA 5DO2A 4ML4A 2F4EA 1D6OA 3CGNA 2FDMA 3RMEA 4HBOA 4L72B 4TNSA 2B31A 2RUQA 3WD4A 3NRKA 1Q6UA 2ZQTA 1H0GA 4ZPVR 1KT0A 4HARA 2A3CA 3RFWA 3UQIA 2KI3A 4ODLA 3RGCA 3TCZA 2XP5A 1W1PA 3UI6A 2DG9A 2A3AA 4QIBA 5BXJA 3WL0A 4DH0A 3RM8A 1EQ3A 3MDYB 4URIA 2MLXA 1F8AB 3KAHA 1JNTA 4DIPA 3WKZA 2PI6A 3KABA 2ZQSA 1SR0A 4MNLA 1EIBA 4XAKA 3O5OA 2A3BA 1N1AA 2XPAA 1W1YA 3GPKA 4MNKA 1GTPA 3BMBA 3ARUA 3H9RB 3WL1A 2YBTA 1E6NA 2RUDA 3IHZA 1ZL1A 1NMVA 3KAIA 5HW6A 3ARTA 3ODKA 3CH9A 2L2SA 1A7XA 4LAXA 5D75A 4R5EA 4QPMA 1D2KA 3ARZA 2LJ4A 3ARWA 3UI4A 1FKBA 3WIJA 1TFVA 4DZ2A 4ODMA 2LPVA 4O2TA 5DEZA 1W9UA 1LL6A 4DROA 3AS1A 4BF8A 1FKJA 4ODNA 2PN0A 4Q22A 4Z2LA 2KR7A 4FN2A 4J4NA 3GTYX 4IT6A 4DRBJ 5HW8A 1TCOC 4MNJA 1PINA 3KZ7A 4MNMA 3IKGA 2KR1A 1J4HA 5HKGA 3UQAA 1OWQA 2QF8A 4S3KA 1WB0A 4JA3A 1FKFA 1VF8A 4WK9A 4DRQA 2ETNA 3RM4A 2RURA 1NWRA 1FKDA 1K9TA 1LL7A 4Q7NA 4Q7JA 3EIPA 1IS7A 1A8RA 4KR0B 1WURA 2DSWA 4FAPA 4WJXA 4IT4A 1HKIA 3AS3A 4TYOA 1KT1A 3IK8A 3PA7A 4R8QA 1J4RA 3KAGA 3WQWA 1GRJA 1EFUB 1ZU8A 2M1IA 2DSUA 3JXVA 5HW7A 3TC5A 1A9CA 2DT3A 3O5GA 1RD6A 3KADA 4JFJA 4DWSD 5HBFA 1BL4A 1LL4A 4Z2IA 2VCDA 1SYTA 1ROTA 1JNDA 1FKTA 1ROUA 2WM0A 2DT2A 3ARXA 1HJXA 4DT4A 2RUCA 3CHEA 2KO7A 2AOSA 4TW7A 4P8VA 4W9OA 1B6CA 4LAVA 3JYMA 4P8XA 3GU0A 3B9EA 2F21A 3ARQA 4WKFA 5GQBA 1D7HA 2UZ5A 2F2DA 2WSEG 2MPHA 3B7XA 1U79A 1FKGA 2M08A 2Y78A 1LQ0A 1WM9A 3KACA 4LAYA 1ZCNA 1D7JA 1TFEA 1E6PA 5DIVA 1FBXA 4P8WA 3WH0A 1ITXA 1NWTA 4NNRA 5GPRA 2MLYA 3ARPA 3FXYA 4JFMA 3WD0A 4MGVA 1YATA 3AS2A 1QPFA 3WD1A 1FAPA 3ARYA 3CGMA 2KGJA 3B9DA 4JYSA 4KQZA 3JYJA 4U86A 1W1VA 4MPKA 1Q6IA 2P4VA 1M5YA 1JNSA 2XP4A 1XHGA 1GPFA 1Y0OA 1EL6A 1UR8A 1GUVA 4Z2GA 4ZS6A 4GIVA 1D7IA 3KCEA 2OFNA 3UI5A 2PV1A 3ALFA 4MAVA 4IPXA 1LG2A 1E44A 2WLZA 4JFLA 1HKKA 1IS8A 3OOBA 1QZ2A 3G6LA 1NMWA 4NE6B 4WKAA 3O5JA 4ODPA 1ZK6A 1HJWA 2KE0A 2N87A 4DRKA 1E15A 1JNEA 2DT1A 1J6YA 2DG3A 1X6LA 3O5LA 1AIPC 2DSVA 2XP8A 3PRDA 4W5UA 1QPLA 3NI6A 3PR9A 1LG1A 4W9QA 4P8UA 1ZB5A 2IUZA 5B8IC 1Q1CA 2JZVA 3IKDA 2LNZA 3TDBA 5HT1A 4HBEA 1BKFA 1F40A 2RQSA 2ZQUA 4LGXA 4UDMA 4DZ3A 1FJDA 3O5KA 5DF0A 1JVWA 2WSFG 4NSBA 1LJYA 2D9FA 3WQVA 1YW5A 5HWBA 1GOIA 1HXVA 4IQ2A 2FKEA 3ARVA 3AS0A 2PPNA 2O01G 4IQCA 3FAPA 1EHNA 1R9HA 4J4OA 3WD3A 4Z2KA 2G41A 2ZR5A 3O5IA 2ITKA 3PRBA 3ALGA 4DWSC 3B8SA 2WLYA 3RM9A 1N3TA 5JH8A 3UQBA 4ODRA 4DWSA 3ARRA 3NTPA 2ESCA 1N3SA 1WPLA 1FKKA 2M2AA 2YBUA 4G2PA 2XP3A 5DITA 5J6EA 2PV2A 1E6ZA 2DPEA 3PRAA 2XP6A 2IF4A 4TW6A 4DRHA 2WK2A 1WAWA 2EULA 1FB1A 3CHDA 5DMZA 1WNOA 1FFQA 1P5QA 4QT3A 1JCHB 1W26A 2LGOA 2LKNA 4PTMA 3O5RA 2XP7A 3OA5A 5GPGA 4W9PA 3W4RA 4MTVA 4DRPA 2DT0A 1E9LA 2WSCG 1NWSA 2RSEA 4C02B 1ZBWA 1HJVA 1W9VA 1EYMA 2DG4A 1J4IA 4DRNA
chains in the Genus database with same CATH topology
1IS8A 2EULA 1FB1A 1A9CA 4QPMA 3VEJA 1TFEA 4JA3A 4NE6B 1FBXA 5DMZA 2ETNA 4NE3B 2P4VA 3GU0A 2LNZA 4DU6A 4Q7JA 1EL6A 3B0BC 1IS7A 2LO0A 4NE5B 1A8RA 4E44B 1WURA 2P11A 1N3TA 2PN0A 1GTPA 1N3RA 3BMBA 4E45B 2F23A 1AIPC 3GTYX 1N3SA 4DRBJ 1WPLA 1WUQA 4R8QA 4DRAE 1GRJA 2KR1A 1EFUB 1WM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EUL A;  2PN0 A;  2F23 A;  3BMB A;  2P4V A;  1TFE A;  1GRJ A;  1AIP C;  3GU0 A;  3GTY X;  1EFU B;  2ETN A;  4Q7J A; 
#chains in the Genus database with same CATH topology
 1T11 A;  2MNT A;  4ITZ A;  1CTN A;  4WIW A;  3AQU A;  3O5Q A;  5DIU A;  2G8Z A;  4WKH A;  2PBC A;  1FKS A;  4LAW A;  1OGG A;  3CHC A;  2XP9 A;  3LW5 G;  3O5E A;  4DWS B;  2P11 A;  2F23 A;  1N3R A;  2B5U B;  3ARO A;  3O5M A;  4TX0 A;  1E6R A;  3O5F A;  3VEJ A;  2WSF K;  4DRJ A;  2OLH A;  4U85 A;  5I98 A;  3QOK A;  1NWU A;  4NE3 B;  3O5D A;  1NSG A;  2XPB A;  4DU6 A;  1W1T A;  1ZBV A;  1X6N A;  1L1P A;  1FKL A;  2ZR6 A;  4E44 B;  1O6I A;  1IX5 A;  4GGQ A;  1NH6 A;  4L3N A;  5HWC A;  4N19 A;  1WUQ A;  4DRM A;  5HUA A;  4DRA E;  4TW8 A;  2DSZ A;  3UF8 A;  1H0I A;  3VAW A;  1FKH A;  2PPP A;  1FKR A;  3KAF A;  1HKM A;  1HKJ A;  2KFW A;  4R0X A;  2MLZ A;  4ZPT R;  4ZPW R;  2WSE K;  4ODQ A;  4NZC A;  1FFR A;  1EDQ A;  2A3E A;  2PPO A;  3I6C A;  3B0B C;  2LO0 A;  1OGB A;  2MF9 A;  3CZ8 A;  4AY1 A;  4QT2 A;  3WD2 A;  1ZBK A;  1PBK A;  2ZQV A;  1W9P A;  2PV3 A;  2VN1 A;  4ODK A;  4DRI A;  4ODO A;  4MSP A;  2ZR4 A;  4Z2J A;  5HTG A;  1Q6H A;  2WSC K;  3EY6 A;  3G6M A;  3ARS A;  3BXW A;  4QZV B;  1FD9 A;  1ZBC A;  3B9A A;  4S3J A;  3FY1 A;  2O9O A;  4JFI A;  4Z2H A;  1KFW A;  2Q5A A;  3LUO A;  4NE5 B;  2AWG A;  4G50 A;  4U84 A;  4JFK A;  4E45 B;  1FKI A;  1UR9 A;  2FAP A;  2O92 A;  1XRV A;  3LW5 K;  3O5P A;  3CHF A;  2K8I A;  1C9H A;  5DO2 A;  4ML4 A;  2F4E A;  1D6O A;  3CGN A;  2FDM A;  3RME A;  4HBO A;  4L72 B;  4TNS A;  2B31 A;  2RUQ A;  3WD4 A;  3NRK A;  1Q6U A;  2ZQT A;  1H0G A;  4ZPV R;  1KT0 A;  4HAR A;  2A3C A;  3RFW A;  3UQI A;  2KI3 A;  4ODL A;  3RGC A;  3TCZ A;  2XP5 A;  1W1P A;  3UI6 A;  2DG9 A;  2A3A A;  4QIB A;  5BXJ A;  3WL0 A;  4DH0 A;  3RM8 A;  1EQ3 A;  3MDY B;  4URI A;  2MLX A;  1F8A B;  3KAH A;  1JNT A;  4DIP A;  3WKZ A;  2PI6 A;  3KAB A;  2ZQS A;  1SR0 A;  4MNL A;  1EIB A;  4XAK A;  3O5O A;  2A3B A;  1N1A A;  2XPA A;  1W1Y A;  3GPK A;  4MNK A;  1GTP A;  3BMB A;  3ARU A;  3H9R B;  3WL1 A;  2YBT A;  1E6N A;  2RUD A;  3IHZ A;  1ZL1 A;  1NMV A;  3KAI A;  5HW6 A;  3ART A;  3ODK A;  3CH9 A;  2L2S A;  1A7X A;  4LAX A;  5D75 A;  4R5E A;  4QPM A;  1D2K A;  3ARZ A;  2LJ4 A;  3ARW A;  3UI4 A;  1FKB A;  3WIJ A;  1TFV A;  4DZ2 A;  4ODM A;  2LPV A;  4O2T A;  5DEZ A;  1W9U A;  1LL6 A;  4DRO A;  3AS1 A;  4BF8 A;  1FKJ A;  4ODN A;  2PN0 A;  4Q22 A;  4Z2L A;  2KR7 A;  4FN2 A;  4J4N A;  3GTY X;  4IT6 A;  4DRB J;  5HW8 A;  1TCO C;  4MNJ A;  1PIN A;  3KZ7 A;  4MNM A;  3IKG A;  2KR1 A;  1J4H A;  5HKG A;  3UQA A;  1OWQ A;  2QF8 A;  4S3K A;  1WB0 A;  4JA3 A;  1FKF A;  1VF8 A;  4WK9 A;  4DRQ A;  2ETN A;  3RM4 A;  2RUR A;  1NWR A;  1FKD A;  1K9T A;  1LL7 A;  4Q7N A;  4Q7J A;  3EIP A;  1IS7 A;  1A8R A;  4KR0 B;  1WUR A;  2DSW A;  4FAP A;  4WJX A;  4IT4 A;  1HKI A;  3AS3 A;  4TYO A;  1KT1 A;  3IK8 A;  3PA7 A;  4R8Q A;  1J4R A;  3KAG A;  3WQW A;  1GRJ A;  1EFU B;  1ZU8 A;  2M1I A;  2DSU A;  3JXV A;  5HW7 A;  3TC5 A;  1A9C A;  2DT3 A;  3O5G A;  1RD6 A;  3KAD A;  4JFJ A;  4DWS D;  5HBF A;  1BL4 A;  1LL4 A;  4Z2I A;  2VCD A;  1SYT A;  1ROT A;  1JND A;  1FKT A;  1ROU A;  2WM0 A;  2DT2 A;  3ARX A;  1HJX A;  4DT4 A;  2RUC A;  3CHE A;  2KO7 A;  2AOS A;  4TW7 A;  4P8V A;  4W9O A;  1B6C A;  4LAV A;  3JYM A;  4P8X A;  3GU0 A;  3B9E A;  2F21 A;  3ARQ A;  4WKF A;  5GQB A;  1D7H A;  2UZ5 A;  2F2D A;  2WSE G;  2MPH A;  3B7X A;  1U79 A;  1FKG A;  2M08 A;  2Y78 A;  1LQ0 A;  1WM9 A;  3KAC A;  4LAY A;  1ZCN A;  1D7J A;  1TFE A;  1E6P A;  5DIV A;  1FBX A;  4P8W A;  3WH0 A;  1ITX A;  1NWT A;  4NNR A;  5GPR A;  2MLY A;  3ARP A;  3FXY A;  4JFM A;  3WD0 A;  4MGV A;  1YAT A;  3AS2 A;  1QPF A;  3WD1 A;  1FAP A;  3ARY A;  3CGM A;  2KGJ A;  3B9D A;  4JYS A;  4KQZ A;  3JYJ A;  4U86 A;  1W1V A;  4MPK A;  1Q6I A;  2P4V A;  1M5Y A;  1JNS A;  2XP4 A;  1XHG A;  1GPF A;  1Y0O A;  1EL6 A;  1UR8 A;  1GUV A;  4Z2G A;  4ZS6 A;  4GIV A;  1D7I A;  3KCE A;  2OFN A;  3UI5 A;  2PV1 A;  3ALF A;  4MAV A;  4IPX A;  1LG2 A;  1E44 A;  2WLZ A;  4JFL A;  1HKK A;  1IS8 A;  3OOB A;  1QZ2 A;  3G6L A;  1NMW A;  4NE6 B;  4WKA A;  3O5J A;  4ODP A;  1ZK6 A;  1HJW A;  2KE0 A;  2N87 A;  4DRK A;  1E15 A;  1JNE A;  2DT1 A;  1J6Y A;  2DG3 A;  1X6L A;  3O5L A;  1AIP C;  2DSV A;  2XP8 A;  3PRD A;  4W5U A;  1QPL A;  3NI6 A;  3PR9 A;  1LG1 A;  4W9Q A;  4P8U A;  1ZB5 A;  2IUZ A;  5B8I C;  1Q1C A;  2JZV A;  3IKD A;  2LNZ A;  3TDB A;  5HT1 A;  4HBE A;  1BKF A;  1F40 A;  2RQS A;  2ZQU A;  4LGX A;  4UDM A;  4DZ3 A;  1FJD A;  3O5K A;  5DF0 A;  1JVW A;  2WSF G;  4NSB A;  1LJY A;  2D9F A;  3WQV A;  1YW5 A;  5HWB A;  1GOI A;  1HXV A;  4IQ2 A;  2FKE A;  3ARV A;  3AS0 A;  2PPN A;  2O01 G;  4IQC A;  3FAP A;  1EHN A;  1R9H A;  4J4O A;  3WD3 A;  4Z2K A;  2G41 A;  2ZR5 A;  3O5I A;  2ITK A;  3PRB A;  3ALG A;  4DWS C;  3B8S A;  2WLY A;  3RM9 A;  1N3T A;  5JH8 A;  3UQB A;  4ODR A;  4DWS A;  3ARR A;  3NTP A;  2ESC A;  1N3S A;  1WPL A;  1FKK A;  2M2A A;  2YBU A;  4G2P A;  2XP3 A;  5DIT A;  5J6E A;  2PV2 A;  1E6Z A;  2DPE A;  3PRA A;  2XP6 A;  2IF4 A;  4TW6 A;  4DRH A;  2WK2 A;  1WAW A;  2EUL A;  1FB1 A;  3CHD A;  5DMZ A;  1WNO A;  1FFQ A;  1P5Q A;  4QT3 A;  1JCH B;  1W26 A;  2LGO A;  2LKN A;  4PTM A;  3O5R A;  2XP7 A;  3OA5 A;  5GPG A;  4W9P A;  3W4R A;  4MTV A;  4DRP A;  2DT0 A;  1E9L A;  2WSC G;  1NWS A;  2RSE A;  4C02 B;  1ZBW A;  1HJV A;  1W9V A;  1EYM A;  2DG4 A;  1J4I A;  4DRN A; 
#chains in the Genus database with same CATH homology
 1IS8 A;  2EUL A;  1FB1 A;  1A9C A;  4QPM A;  3VEJ A;  1TFE A;  4JA3 A;  4NE6 B;  1FBX A;  5DMZ A;  2ETN A;  4NE3 B;  2P4V A;  3GU0 A;  2LNZ A;  4DU6 A;  4Q7J A;  1EL6 A;  3B0B C;  1IS7 A;  2LO0 A;  4NE5 B;  1A8R A;  4E44 B;  1WUR A;  2P11 A;  1N3T A;  2PN0 A;  1GTP A;  1N3R A;  3BMB A;  4E45 B;  2F23 A;  1AIP C;  3GTY X;  1N3S A;  4DRB J;  1WPL A;  1WUQ A;  4R8Q A;  4DRA E;  1GRJ A;  2KR1 A;  1EFU B;  1WM9 A; 
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