3BMBA

Crystal structure of a new rna polymerase interacting protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
135
structure length
135
Chain Sequence
SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
molecule tags Rna binding protein
source organism Escherichia coli
publication title Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.
pubmed doi rcsb
molecule keywords Regulator of nucleoside diphosphate kinase
total genus 36
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 3bmbA01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 3bmbA02
3GTYX 2ETNA 1AIPC 1EFUB 1TFEA 4Q7JA 3GU0A 2F23A 2PN0A 1GRJA 2EULA 3BMBA 2P4VA
chains in the Genus database with same CATH superfamily
5HBFA 2DG9A 1NSGA 2VN1A 3UI4A 1SR0A 1FKBA 1FAPA 4JFJA 4W9OA 3ALGA 2M2AA 4KQZA 2F4EA 4Z2LA 2WLZA 4WK9A 1UR9A 3O5JA 4L3NA 3PA7A 1D7IA 1EHNA 3RM9A 3RFWA 1Q6HA 2D9FA 2PV3A 2YBTA 4L72B 1W1TA 4Z2HA 4KR0B 1ROTA 1FKTA 3ARWA 3CHDA 2RUDA 1FKDA 2RQSA 2ZR4A 3H9RB 1FFRA 1Q6UA 2LNZA 2DG3A 4UDMA 5D75A 2OFNA 4FN2A 2FKEA 3NI6A 4ODLA 2WM0A 4JFIA 1W1VA 3ARXA 1H0GA 5DEZA 2RUQA 3O5EA 3LUOA 3EIPA 4J4OA 4MAVA 3B9AA 1E6ZA 1Y0OA 3ARTA 1TFVA 3KAGA 2A3BA 2Q5AA 4JYSA 4S3JA 1XHGA 1YATA 3QOKA 1F8AB 1GUVA 4QZVB 5HW8A 3O5KA 1NMVA 2DT2A 5HW6A 4XAKA 5HTGA 1HJWA 1UR8A 2JZVA 4DWSD 3AS1A 2VCDA 4PTMA 2MLZA 2M08A 1BKFA 2F23A 1A7XA 2F21A 2DSVA 2ZQTA 2MLYA 4MTVA 1KFWA 3CHEA 4WKHA 4WIWA 3IKDA 3PRAA 1FKSA 4DRHA 2ESCA 2EULA 1PINA 4DZ3A 3KAHA 4HBEA 4DWSA 4FAPA 3IHZA 2MPHA 2XP3A 4ML4A 2DT3A 4GIVA 4DRIA 4MPKA 3PRDA 4S3KA 3WQVA 4DRJA 2KR1A 3WL1A 1JNDA 3WL0A 4E45B 2KE0A 1T11A 4DRQA 1ZBKA 3CGNA 4P8UA 3ARZA 2L2SA 5DO2A 3TC5A 3B9EA 4U86A 1JNEA 5JH8A 4E44B 4NE3B 3KZ7A 3KACA 1OGBA 1B6CA 2A3CA 4ODMA 2WSFG 4WKAA 1J6YA 2P11A 1W1YA 3O5OA 1X6NA 2XPAA 4JA3A 1W9VA 2XP5A 2PPOA 1GOIA 3ARUA 1HKJA 3B0BC 2B31A 4DZ2A 4W9PA 2AOSA 3IKGA 3O5GA 3O5RA 1A9CA 2QF8A 1ZL1A 4HBOA 5HKGA 4ODOA 1FKGA 3AROA 4P8XA 1E6RA 1WAWA 3RMEA 1FKFA 1KT1A 4TNSA 1FKRA 1LL7A 2FAPA 1EQ3A 1JCHB 2KI3A 1NWRA 1N3RA 4DU6A 1C9HA 4DWSB 4LAVA 4IPXA 3JYMA 4TX0A 3NTPA 1WPLA 1ZBCA 2WSCK 1QPLA 1NWTA 1D2KA 4DRBJ 3CH9A 4DT4A 1E6NA 2Y78A 1OWQA 1XRVA 4QT2A 3B8SA 4LGXA 4ZS6A 4DWSC 1D7JA 5DIUA 3OA5A 5GPGA 2O9OA 1EDQA 2O01G 2WSFK 1ZK6A 4U85A 1NMWA 1W26A 3O5LA 2A3EA 2XP6A 1TCOC 4JFKA 2ZR5A 2DSUA 4DRAE 3O5DA 1E6PA 1HKIA 1LL6A 4MNLA 3WH0A 4DRMA 3B9DA 4IT4A 4DRKA 3EY6A 4MGVA 5HUAA 5HT1A 3KABA 4IQCA 4Z2KA 3TCZA 2ZQUA 3KAIA 4ODPA 1BL4A 1E15A 1EFUB 1X6LA 2FDMA 1F40A 3ARVA 2A3AA 1O6IA 2XP7A 4P8WA 2LPVA 3GPKA 1LL4A 2KR7A 2K8IA 2PN0A 2G8ZA 3WD4A 1FKJA 1FBXA 2KGJA 4ODNA 1FJDA 1P5QA 1CTNA 3UI6A 3BMBA 5HW7A 3WD0A 4NNRA 4N19A 2AWGA 2PV2A 2ZR6A 4Q7NA 3AS3A 4J4NA 1N1AA 3AQUA 3PRBA 4ODKA 4GGQA 2LJ4A 3O5FA 2F2DA 3FY1A 2WSCG 3CZ8A 4ODQA 1NWSA 3GU0A 5HWCA 4W9QA 2IUZA 1LG1A 1JNTA 1HKMA 5I98A 1J4HA 4QT3A 1LJYA 2OLHA 3O5MA 4IQ2A 2RSEA 1LG2A 1QZ2A 1WUQA 1FKIA 3BXWA 2RURA 2WSEG 2ZQVA 3RGCA 3UQIA 2B5UB 3I6CA 5BXJA 2PI6A 3JYJA 1NH6A 4IT6A 3VAWA 1JVWA 1J4IA 4MNJA 2MNTA 5GQBA 3PR9A 5DITA 1KT0A 4LAXA 1E44A 3WD3A 1A8RA 3LW5K 1FD9A 4DRNA 3WKZA 4O2TA 1PBKA 4Q22A 3TDBA 4AY1A 3O5PA 1R9HA 1Q1CA 3UI5A 2YBUA 1WNOA 4ZPTR 1HXVA 4R5EA 3G6MA 3WQWA 3OOBA 4NE6B 5DIVA 1ZU8A 3RM8A 3ARYA 4MSPA 1HKKA 1U79A 2ZQSA 4DIPA 1ITXA 1OGGA 4TW8A 1K9TA 1ZB5A 2MLXA 3VEJA 3ALFA 3NRKA 3KADA 2PPNA 5DF0A 2DG4A 3WIJA 2LGOA 4Z2JA 2WSEK 2DPEA 4BF8A 4Z2GA 1HJXA 4DROA 2G41A 1M5YA 1RD6A 4WKFA 4JFLA 1LQ0A 2KO7A 2P4VA 1JNSA 3GTYX 2DSZA 3W4RA 1YW5A 4LAYA 4R8QA 2UZ5A 4WJXA 1WURA 4G50A 5DMZA 1E9LA 5GPRA 1ZCNA 2RUCA 3IK8A 4ZPWR 3WD2A 1FKLA 4Z2IA 4QPMA 1WB0A 2LO0A 2XPBA 1Q6IA 1TFEA 1FB1A 1IS8A 1EYMA 4DRPA 5B8IC 5J6EA 1HJVA 1ZBVA 3AS2A 3UQAA 3JXVA 3B7XA 3G6LA 3CHFA 4NZCA 2KFWA 2MF9A 1WM9A 2O92A 3ARQA 2XP9A 1N3TA 3LW5G 3ARPA 3UF8A 4TYOA 4MNMA 4LAWA 4ODRA 2DT1A 3O5IA 1L1PA 3ODKA 4DH0A 4HARA 4C02B 2ITKA 1FKHA 3KCEA 4U84A 2WK2A 1GTPA 1FKKA 3AS0A 1QPFA 3CHCA 1GPFA 4JFMA 1EIBA 1GRJA 4TW7A 1ROUA 3O5QA 3RM4A 4QIBA 4NE5B 3FAPA 1N3SA 2DT0A 2N87A 2PBCA 1W1PA 3CGMA 1IS7A 3FXYA 4MNKA 2XP4A 1W9UA 4Q7JA 1ZBWA 4G2PA 2DSWA 2PPPA 1D7HA 4W5UA 1VF8A 2LKNA 1D6OA 4ZPVR 4P8VA 4ITZA 3ARSA 1J4RA 3UQBA 2WLYA 1SYTA 2M1IA 3MDYB 1FFQA 2ETNA 3ARRA 5HWBA 3KAFA 1W9PA 4TW6A 1EL6A 3WD1A 1AIPC 2IF4A 4R0XA 4URIA 2PV1A 4NSBA 2XP8A 1IX5A 1H0IA 1NWUA
chains in the Genus database with same CATH topology
3GTYX 1WM9A 1FBXA 4E44B 4R8QA 4NE3B 1A8RA 1GRJA 1WURA 3BMBA 1N3TA 5DMZA 2ETNA 2LNZA 4NE5B 3VEJA 1N3SA 1WUQA 1EL6A 1N3RA 4QPMA 2P11A 4DU6A 1AIPC 2LO0A 1IS7A 2KR1A 1EFUB 4JA3A 1TFEA 1FB1A 4Q7JA 1IS8A 2F23A 4NE6B 1WPLA 4E45B 2P4VA 1GTPA 3B0BC 4DRAE 4DRBJ 3GU0A 2PN0A 2EULA 1A9CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTY X;  2ETN A;  1AIP C;  1EFU B;  1TFE A;  4Q7J A;  3GU0 A;  2F23 A;  2PN0 A;  1GRJ A;  2EUL A;  3BMB A;  2P4V A; 
#chains in the Genus database with same CATH topology
 5HBF A;  2DG9 A;  1NSG A;  2VN1 A;  3UI4 A;  1SR0 A;  1FKB A;  1FAP A;  4JFJ A;  4W9O A;  3ALG A;  2M2A A;  4KQZ A;  2F4E A;  4Z2L A;  2WLZ A;  4WK9 A;  1UR9 A;  3O5J A;  4L3N A;  3PA7 A;  1D7I A;  1EHN A;  3RM9 A;  3RFW A;  1Q6H A;  2D9F A;  2PV3 A;  2YBT A;  4L72 B;  1W1T A;  4Z2H A;  4KR0 B;  1ROT A;  1FKT A;  3ARW A;  3CHD A;  2RUD A;  1FKD A;  2RQS A;  2ZR4 A;  3H9R B;  1FFR A;  1Q6U A;  2LNZ A;  2DG3 A;  4UDM A;  5D75 A;  2OFN A;  4FN2 A;  2FKE A;  3NI6 A;  4ODL A;  2WM0 A;  4JFI A;  1W1V A;  3ARX A;  1H0G A;  5DEZ A;  2RUQ A;  3O5E A;  3LUO A;  3EIP A;  4J4O A;  4MAV A;  3B9A A;  1E6Z A;  1Y0O A;  3ART A;  1TFV A;  3KAG A;  2A3B A;  2Q5A A;  4JYS A;  4S3J A;  1XHG A;  1YAT A;  3QOK A;  1F8A B;  1GUV A;  4QZV B;  5HW8 A;  3O5K A;  1NMV A;  2DT2 A;  5HW6 A;  4XAK A;  5HTG A;  1HJW A;  1UR8 A;  2JZV A;  4DWS D;  3AS1 A;  2VCD A;  4PTM A;  2MLZ A;  2M08 A;  1BKF A;  2F23 A;  1A7X A;  2F21 A;  2DSV A;  2ZQT A;  2MLY A;  4MTV A;  1KFW A;  3CHE A;  4WKH A;  4WIW A;  3IKD A;  3PRA A;  1FKS A;  4DRH A;  2ESC A;  2EUL A;  1PIN A;  4DZ3 A;  3KAH A;  4HBE A;  4DWS A;  4FAP A;  3IHZ A;  2MPH A;  2XP3 A;  4ML4 A;  2DT3 A;  4GIV A;  4DRI A;  4MPK A;  3PRD A;  4S3K A;  3WQV A;  4DRJ A;  2KR1 A;  3WL1 A;  1JND A;  3WL0 A;  4E45 B;  2KE0 A;  1T11 A;  4DRQ A;  1ZBK A;  3CGN A;  4P8U A;  3ARZ A;  2L2S A;  5DO2 A;  3TC5 A;  3B9E A;  4U86 A;  1JNE A;  5JH8 A;  4E44 B;  4NE3 B;  3KZ7 A;  3KAC A;  1OGB A;  1B6C A;  2A3C A;  4ODM A;  2WSF G;  4WKA A;  1J6Y A;  2P11 A;  1W1Y A;  3O5O A;  1X6N A;  2XPA A;  4JA3 A;  1W9V A;  2XP5 A;  2PPO A;  1GOI A;  3ARU A;  1HKJ A;  3B0B C;  2B31 A;  4DZ2 A;  4W9P A;  2AOS A;  3IKG A;  3O5G A;  3O5R A;  1A9C A;  2QF8 A;  1ZL1 A;  4HBO A;  5HKG A;  4ODO A;  1FKG A;  3ARO A;  4P8X A;  1E6R A;  1WAW A;  3RME A;  1FKF A;  1KT1 A;  4TNS A;  1FKR A;  1LL7 A;  2FAP A;  1EQ3 A;  1JCH B;  2KI3 A;  1NWR A;  1N3R A;  4DU6 A;  1C9H A;  4DWS B;  4LAV A;  4IPX A;  3JYM A;  4TX0 A;  3NTP A;  1WPL A;  1ZBC A;  2WSC K;  1QPL A;  1NWT A;  1D2K A;  4DRB J;  3CH9 A;  4DT4 A;  1E6N A;  2Y78 A;  1OWQ A;  1XRV A;  4QT2 A;  3B8S A;  4LGX A;  4ZS6 A;  4DWS C;  1D7J A;  5DIU A;  3OA5 A;  5GPG A;  2O9O A;  1EDQ A;  2O01 G;  2WSF K;  1ZK6 A;  4U85 A;  1NMW A;  1W26 A;  3O5L A;  2A3E A;  2XP6 A;  1TCO C;  4JFK A;  2ZR5 A;  2DSU A;  4DRA E;  3O5D A;  1E6P A;  1HKI A;  1LL6 A;  4MNL A;  3WH0 A;  4DRM A;  3B9D A;  4IT4 A;  4DRK A;  3EY6 A;  4MGV A;  5HUA A;  5HT1 A;  3KAB A;  4IQC A;  4Z2K A;  3TCZ A;  2ZQU A;  3KAI A;  4ODP A;  1BL4 A;  1E15 A;  1EFU B;  1X6L A;  2FDM A;  1F40 A;  3ARV A;  2A3A A;  1O6I A;  2XP7 A;  4P8W A;  2LPV A;  3GPK A;  1LL4 A;  2KR7 A;  2K8I A;  2PN0 A;  2G8Z A;  3WD4 A;  1FKJ A;  1FBX A;  2KGJ A;  4ODN A;  1FJD A;  1P5Q A;  1CTN A;  3UI6 A;  3BMB A;  5HW7 A;  3WD0 A;  4NNR A;  4N19 A;  2AWG A;  2PV2 A;  2ZR6 A;  4Q7N A;  3AS3 A;  4J4N A;  1N1A A;  3AQU A;  3PRB A;  4ODK A;  4GGQ A;  2LJ4 A;  3O5F A;  2F2D A;  3FY1 A;  2WSC G;  3CZ8 A;  4ODQ A;  1NWS A;  3GU0 A;  5HWC A;  4W9Q A;  2IUZ A;  1LG1 A;  1JNT A;  1HKM A;  5I98 A;  1J4H A;  4QT3 A;  1LJY A;  2OLH A;  3O5M A;  4IQ2 A;  2RSE A;  1LG2 A;  1QZ2 A;  1WUQ A;  1FKI A;  3BXW A;  2RUR A;  2WSE G;  2ZQV A;  3RGC A;  3UQI A;  2B5U B;  3I6C A;  5BXJ A;  2PI6 A;  3JYJ A;  1NH6 A;  4IT6 A;  3VAW A;  1JVW A;  1J4I A;  4MNJ A;  2MNT A;  5GQB A;  3PR9 A;  5DIT A;  1KT0 A;  4LAX A;  1E44 A;  3WD3 A;  1A8R A;  3LW5 K;  1FD9 A;  4DRN A;  3WKZ A;  4O2T A;  1PBK A;  4Q22 A;  3TDB A;  4AY1 A;  3O5P A;  1R9H A;  1Q1C A;  3UI5 A;  2YBU A;  1WNO A;  4ZPT R;  1HXV A;  4R5E A;  3G6M A;  3WQW A;  3OOB A;  4NE6 B;  5DIV A;  1ZU8 A;  3RM8 A;  3ARY A;  4MSP A;  1HKK A;  1U79 A;  2ZQS A;  4DIP A;  1ITX A;  1OGG A;  4TW8 A;  1K9T A;  1ZB5 A;  2MLX A;  3VEJ A;  3ALF A;  3NRK A;  3KAD A;  2PPN A;  5DF0 A;  2DG4 A;  3WIJ A;  2LGO A;  4Z2J A;  2WSE K;  2DPE A;  4BF8 A;  4Z2G A;  1HJX A;  4DRO A;  2G41 A;  1M5Y A;  1RD6 A;  4WKF A;  4JFL A;  1LQ0 A;  2KO7 A;  2P4V A;  1JNS A;  3GTY X;  2DSZ A;  3W4R A;  1YW5 A;  4LAY A;  4R8Q A;  2UZ5 A;  4WJX A;  1WUR A;  4G50 A;  5DMZ A;  1E9L A;  5GPR A;  1ZCN A;  2RUC A;  3IK8 A;  4ZPW R;  3WD2 A;  1FKL A;  4Z2I A;  4QPM A;  1WB0 A;  2LO0 A;  2XPB A;  1Q6I A;  1TFE A;  1FB1 A;  1IS8 A;  1EYM A;  4DRP A;  5B8I C;  5J6E A;  1HJV A;  1ZBV A;  3AS2 A;  3UQA A;  3JXV A;  3B7X A;  3G6L A;  3CHF A;  4NZC A;  2KFW A;  2MF9 A;  1WM9 A;  2O92 A;  3ARQ A;  2XP9 A;  1N3T A;  3LW5 G;  3ARP A;  3UF8 A;  4TYO A;  4MNM A;  4LAW A;  4ODR A;  2DT1 A;  3O5I A;  1L1P A;  3ODK A;  4DH0 A;  4HAR A;  4C02 B;  2ITK A;  1FKH A;  3KCE A;  4U84 A;  2WK2 A;  1GTP A;  1FKK A;  3AS0 A;  1QPF A;  3CHC A;  1GPF A;  4JFM A;  1EIB A;  1GRJ A;  4TW7 A;  1ROU A;  3O5Q A;  3RM4 A;  4QIB A;  4NE5 B;  3FAP A;  1N3S A;  2DT0 A;  2N87 A;  2PBC A;  1W1P A;  3CGM A;  1IS7 A;  3FXY A;  4MNK A;  2XP4 A;  1W9U A;  4Q7J A;  1ZBW A;  4G2P A;  2DSW A;  2PPP A;  1D7H A;  4W5U A;  1VF8 A;  2LKN A;  1D6O A;  4ZPV R;  4P8V A;  4ITZ A;  3ARS A;  1J4R A;  3UQB A;  2WLY A;  1SYT A;  2M1I A;  3MDY B;  1FFQ A;  2ETN A;  3ARR A;  5HWB A;  3KAF A;  1W9P A;  4TW6 A;  1EL6 A;  3WD1 A;  1AIP C;  2IF4 A;  4R0X A;  4URI A;  2PV1 A;  4NSB A;  2XP8 A;  1IX5 A;  1H0I A;  1NWU A; 
#chains in the Genus database with same CATH homology
 3GTY X;  1WM9 A;  1FBX A;  4E44 B;  4R8Q A;  4NE3 B;  1A8R A;  1GRJ A;  1WUR A;  3BMB A;  1N3T A;  5DMZ A;  2ETN A;  2LNZ A;  4NE5 B;  3VEJ A;  1N3S A;  1WUQ A;  1EL6 A;  1N3R A;  4QPM A;  2P11 A;  4DU6 A;  1AIP C;  2LO0 A;  1IS7 A;  2KR1 A;  1EFU B;  4JA3 A;  1TFE A;  1FB1 A;  4Q7J A;  1IS8 A;  2F23 A;  4NE6 B;  1WPL A;  4E45 B;  2P4V A;  1GTP A;  3B0B C;  4DRA E;  4DRB J;  3GU0 A;  2PN0 A;  2EUL A;  1A9C A; 
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