The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
130
|
structure length |
130
|
Chain Sequence |
MMTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNPATGEVPADIVAQARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLPKDVGLEIEAIAVRK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
HYPOTHETICAL PROTEIN HI0719
|
| publication title |
Solution Structure and Functional Ligand Screening of HI0719, a Highly Conserved Protein from Bacteria to Humans in the YjgF/YER057c/UK114 Family
pubmed doi rcsb |
| source organism |
Haemophilus influenzae
|
| molecule tags |
Unknown function
|
| total genus |
22
|
| structure length |
130
|
| sequence length |
130
|
| chains with identical sequence |
B, C
|
| ec nomenclature | |
| pdb deposition date | 2001-05-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01042 | Ribonuc_L-PSP | Endoribonuclease L-PSP |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | RutC-like |
#chains in the Genus database with same CATH superfamily 2CSL A; 1ONI A; 3LME A; 4NWO B; 3M1X A; 2CWJ A; 2UYP A; 1QAH A; 2CW4 A; 1XHO A; 5HP8 A; 3V4D A; 1COM A; 3ZP4 A; 4ZK7 A; 1NQ3 A; 1DBF A; 3GTZ A; 3MQW A; 1J7H A; 5HP7 A; 1ODE A; 1XRG A; 3D01 A; 2DYY A; 3QUW A; 3R0P A; 1UI9 A; 3ZO8 A; 3LYB A; 1FNK A; 1UFY A; 2CVL A; 2IG8 A; 3K12 A; 3KJJ A; 1QU9 A; 2OTM A; 3ZP7 A; 3I7T A; 1FNJ A; 3ZOP A; 2CHT A; 1JD1 A; 3I3F A; 3KJK A; 1QD9 A; 2UYJ A; 2UYN A; 3K0T A; 1X25 A; 2UYK A; 3M4S A; 2CHS A; 3VCZ A; 2EWC A; 1PF5 A; 2B33 A; 3L7Q A; 2UYN B; #chains in the Genus database with same CATH topology 5LOV A; 3N4Y A; 3KE1 A; 2HS4 A; 2UYP A; 1YJ9 F; 4X1K A; 4C81 A; 1J7H A; 1CLI A; 3G4S F; 1N8R H; 3ZO8 A; 2ZOD A; 4U3J B; 4O4I B; 3CD6 F; 3E22 B; 1R1M A; 3S0H A; 3RYH A; 5LP6 B; 4X1I A; 1Z5W A; 4I55 A; 3CC7 F; 4O4H A; 4O2B A; 3RA6 A; 1Q86 H; 1VHA A; 2K1S A; 4G88 A; 2QEX F; 2RHH A; 2LBX A; 2Z1F A; 4XCQ A; 2OHW A; 1JFF B; 1T0A A; 5EZY A; 3FFM A; 3NVI B; 1Q8R A; 1W59 A; 1VQV A; 4U3J A; 1W55 A; 4O4L B; 2MQE A; 3MCQ A; 4I4T B; 4F6R A; 4TV8 A; 3VOB A; 4EI7 A; 3CCV F; 1FFX A; 5MN6 A; 4YJ3 A; 3WGJ A; 5FNV B; 2CHT A; 1KQS F; 1YI2 F; 1GZ0 A; 1U3P A; 3IKF A; 2CHS A; 5CA1 B; 2EWC A; 1VQP F; 3CPW F; 2AIZ P; 4NUT A; 2CWJ A; 1VQ5 F; 3V4D A; 2AIF A; 4YJ2 A; 2RHJ A; 5IJ9 A; 1TVK A; 2Z1U A; 4I4T A; 3NK6 A; 3S02 A; 4ZI7 B; 1VQM F; 3JAT A; 5HY4 A; 4BVQ A; 3CCM F; 5FNV A; 1QVF F; 2FGY A; 2RB9 A; 5JQG A; 1U40 A; 4ZOL A; 4BW0 B; 3UT5 A; 4BVT A; 1JD1 A; 5KMG B; 3MCA B; 3M4S A; 4RHA A; 2YYE A; 3G71 F; 1YJN F; 3N2K B; 5HXU A; 1VQ9 F; 4G4Z A; 2WAL A; 3GHZ A; 3JAS B; 3F6M A; 3JAR A; 5EB0 A; 4TV9 B; 3CCL F; 5EWR A; 2V9Y A; 4ERH A; 4ZK7 A; 1DBF A; 1NQ3 A; 1DT9 A; 2L26 A; 1IV2 A; 3WGL A; 1GX1 A; 4U39 A; 4G4W A; 2KTV A; 2OTM A; 5A2Q M; 1K8A H; 3S0W A; 3V3T A; 1JN1 A; 3VYU C; 1TUB A; 5LXT B; 3FD5 A; 5MN4 A; 2IQQ A; 1PF5 A; 3VYT C; 2HVY D; 2YXZ A; 4TV9 A; 3LME A; 5EYP A; 3BYQ A; 5IJ0 B; 3JAM M; 3JAW A; 3IR9 A; 5HP8 A; 3LWP C; 3CCJ F; 1VK3 A; 1XRG A; 4BY9 D; 5ITZ B; 4X1K B; 4LNU A; 2GZL A; 3HKD A; 5EB1 B; 5IYZ A; 5EO3 A; 1W3E X; 5LXT A; 2HP0 B; 2VXY A; 3OON A; 3RYH B; 2OTJ F; 4X1I B; 4IHJ B; 3VCZ A; 3OW2 F; 3O85 A; 4O4H B; 4BVS A; 2W8B C; 3G6E F; 4LCK A; 1XBI A; 3M1X A; 2HS0 A; 4R40 B; 1XHO A; 2QI2 A; 4RQO A; 3ZP4 A; 5ITZ A; 3JVH A; 1X52 A; 1NMU B; 1KD1 H; 5HY1 A; 3LWQ C; 5EZY B; 4BT3 A; 3AGK A; 5JH7 A; 1YIJ F; 4G4X A; 5C8Y A; 5GIO C; 1UFY A; 2Q1Y A; 1H48 A; 3F0E A; 4PWT A; 2HP0 A; 1QU9 A; 2DT4 A; 3ZP7 A; 5B8F A; 4IHJ A; 1GO1 A; 4F6R B; 3TD5 A; 4TV8 B; 3K14 A; 3K2X A; 1FFX B; 3LWR C; 4HNA A; 4YJ3 B; 1X7O A; 3NVK E; 3SIV A; 2CSL A; 4X3M A; 1VQ8 F; 3ERN A; 1K73 H; 2I6D A; 4EI8 A; 2GLZ A; 4TUY B; 3C9T A; 3Q8H A; 3HKC B; 4YJ2 B; 4B62 A; 3LYB A; 2NMU A; 5IJ9 B; 1TVK B; 4C8G A; 5CA0 A; 1VQK F; 3CC4 F; 3RYI B; 3WGK A; 3S06 A; 3I55 F; 3D54 A; 3JAT B; 3OBY A; 4ZHQ A; 2UYN A; 2VGM A; 3VYS C; 5JQG B; 1W5B A; 4ZOL B; 3UT5 B; 1SDS A; 1OFU A; 3HTN A; 3RYC A; 3S0Y A; 3ELC A; 3IEW A; 4TUY A; 1NJI H; 2VAP A; 3HKC A; 1COM A; 3JAR B; 1SZQ A; 4X1Y B; 2UZH A; 1Q82 H; 3RYI A; 2JNB A; 1Q81 H; 4O4J A; 4ZHV A; 4B46 A; 3CPQ A; 3JAK B; 3C9R A; 3CME F; 2UYK A; 2I6R A; 4TZZ A; 1TUB B; 3MBM A; 4BT6 A; 4FFB A; 5FLX M; 3N4Z A; 1OAP A; 1SA0 B; 5EIB D; 2HRY A; 5EYP B; 3IEQ A; 2ZOV A; 1ZWZ A; 4X1Y A; 3WGN A; 3VO8 A; 5G4U C; 3HKB A; 3NMU C; 3JAW B; 4DRX A; 2HRU A; 3HAX D; 1JJ2 F; 2VAM A; 4NQ3 A; 5J2U B; 3QTY A; 4LNU B; 3NK7 A; 5GAN K; 3HKD B; 2HS3 A; 5JVD A; 3J80 M; 3IKE A; 1KNJ A; 5IYZ B; 1XV2 A; 3JAK A; 2R75 1; 3CYP B; 1W5A A; 1IV4 A; 2ZAU A; 5CB4 A; 2Z1T A; 2VAW A; 3CG6 A; 2LBT A; 1S72 F; 1SA0 A; 4C8I A; 3N2G A; 3J81 M; 3ESJ A; 3CB2 A; 3CCR F; 3WPW A; 3RYF B; 3JCM M; 3GTZ A; 3S03 A; 1ODE A; 3E1Y A; 3SIU A; 2HX0 A; 5J2U A; 2KTU A; 4I50 A; 5KX5 B; 3M84 A; 2BO1 A; 5JH7 B; 3DDN A; 5C8Y B; 1K9M H; 3E20 B; 1IV1 A; 1VQ7 F; 5FJ4 C; 3JAL B; 1VQL F; 1RLG A; 1U3L A; 4HNA B; 2KGW A; 3QHD A; 3RYF A; 3IMP A; 1W41 A; 2BTO A; 1CK2 A; 3F0D A; 3PLA C; 2CW4 A; 4BVR A; 3P4E A; 4DXD A; 3P10 A; 2HQS C; 1M90 H; 3HKE A; 5KX5 A; 3R0P A; 2IG8 A; 1W40 A; 4X20 A; 3CC2 F; 4EB6 A; 2OZB A; 3CCS F; 5CA0 B; 3JAL A; 3WGM A; 2OTL F; 3CXC F; 5BMV A; 3I3F A; 3FD6 A; 1QD9 A; 1W57 A; 1YQN A; 2LBW A; 5LA6 A; 1W5E A; 5LYJ B; 3LWV C; 4ZHQ B; 2B33 A; 3LWO C; 2UYN B; 2KG4 A; 1Q7Y H; 3WXM B; 4KWE A; 2H8C A; 3C8L A; 3RYC B; 1VQ4 F; 3VTI C; 4WBN A; 4O2A A; 2H6L A; 5GON B; 3EOR A; 4G4V A; 3WPX A; 4IIJ A; 1YGY A; 1RQ2 A; 4O4J B; 5LYJ A; 5HY0 A; 3KJK A; 1KC8 H; 2RHO A; 2UYJ A; 1YIT F; 5G4V C; 1RLU A; 2AMT A; 3L7Q A; 2G9I A; 1VQO F; 3WJQ A; 5HY2 A; 4FFB B; 1RA4 A; 5JCO A; 2GVI A; 2BTU A; 5GON A; 3MQW A; 3LDT A; 4O4I A; 3D01 A; 3E22 A; 1UI9 A; 3OBW A; 5LP6 A; 5MN5 A; 3HKB B; 1YJW F; 4DRX B; 3C9U A; 3K12 A; 4M8I A; 5IT9 M; 2ZVZ A; 4EI9 A; 1IPA A; 3TD4 A; 3VMF B; 5J2T B; 2FC3 A; 2ZF8 A; 5JVD B; 1W58 1; 2Z1E A; 1YHQ F; 5JCO C; 1QVG F; 3MDO A; 1JFF A; 5CB4 B; 1M1K H; 3DC2 A; 1QAH A; 5LP6 C; 4ZHW A; 1VH8 A; 3N2G B; 2Z01 A; 2IAF A; 1Z5V A; 2PMP A; 4O4L A; 4C8E A; 3T80 A; 1FNK A; 4X3L A; 2VGN A; 1W42 A; 1H7M A; 2ALE A; 3P0Z A; 3CMA F; 5J2T A; 4I50 B; 3I7T A; 3CYQ A; 2Q1X A; 5HWE A; 3GYQ A; 5EIB C; 5CA1 A; 4ZHY B; 3B6N A; 5HXZ A; 2F9Z C; 2H8E A; 3FPI A; 1IV3 A; 2PHN A; 3WJR A; 3V7Q A; 4BT7 A; 5HP7 A; 2QA4 F; 4B5C A; 3HJW C; 3VOA A; 1VQ6 F; 3WJP A; 1GO0 A; 1W5F A; 5GIP C; 3RA5 A; 1E7K A; 2R6R 1; 4ZI7 A; 2RHL A; 2CZW A; 1KNK A; 3CCU F; 3KHN A; 4BT4 A; 2BTQ B; 1VQN F; 3HKE B; 3CCE F; 3LFO A; 3KIZ A; 5EAZ A; 4G4Y A; 5KMG A; 1FSZ A; 4X20 B; 4EB6 B; 3ZOP A; 1JY8 A; 3HWU A; 3N2K A; 3I56 F; 1W2B F; 4E6E A; 3K0T A; 3U0O A; 3JAS A; 3J7A R; 4BT5 A; 5BMV B; 1RQ7 A; 3RE3 A; 5LA6 B; 1ONI A; 4NWO B; 5GAP K; 5LOV B; 1CN7 A; 5DCV A; 4BT2 A; 3F0G A; 2DYY A; 3QUW A; 2N48 A; 2P6Y A; 2QTP A; 1PXW A; 5AVM A; 3VI6 A; 4WBN B; 1T0K B; 2CVL A; 1U43 A; 4O2A B; 3V7E A; 3KJJ A; 3VIU A; 3FBA A; 3C9S A; 4B45 A; 5GIN C; 1FNJ A; 3TD3 A; 2LCA A; 2ZVY A; 4I55 B; 4IIJ B; 2HP3 A; 3F0F A; 3PAF A; 4C4W C; 4C82 A; 1H47 A; 1X25 A; 4O2B B; 3ON1 A; 5IJ0 A; 3CCQ F; 1X7P A; 3D00 A; #chains in the Genus database with same CATH homology 2CSL A; 1ONI A; 3LME A; 4NWO B; 3M1X A; 2CWJ A; 2UYP A; 1QAH A; 2CW4 A; 1XHO A; 5HP8 A; 3V4D A; 1COM A; 3ZP4 A; 4ZK7 A; 1NQ3 A; 1DBF A; 3GTZ A; 3MQW A; 1J7H A; 5HP7 A; 1ODE A; 1XRG A; 3D01 A; 2DYY A; 3QUW A; 3R0P A; 1UI9 A; 3ZO8 A; 3LYB A; 1FNK A; 1UFY A; 2CVL A; 2IG8 A; 3K12 A; 3KJJ A; 1QU9 A; 2OTM A; 3ZP7 A; 3I7T A; 1FNJ A; 3ZOP A; 2CHT A; 1JD1 A; 3I3F A; 3KJK A; 1QD9 A; 2UYJ A; 2UYN A; 3K0T A; 1X25 A; 2UYK A; 3M4S A; 2CHS A; 3VCZ A; 2EWC A; 1PF5 A; 2B33 A; 3L7Q A; 2UYN B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
