2IQQA

The crystal structure of iron, sulfur-dependent l-serine dehydratase from legionella pneumophila subsp. pneumophila
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
145
structure length
145
Chain Sequence
SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Legionella pneumophila subsp. pneumophila
publication title The Crystal Structure of Iron, Sulfur-Dependent L-serine dehydratase from Legionella pneumophila subsp. pneumophila
rcsb
molecule keywords Iron, Sulfur-Dependent L-serine dehydratase
total genus 37
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature ec 4.3.1.17: L-serine ammonia-lyase.
pdb deposition date 2006-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03315 SDH_beta Serine dehydratase beta chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 2iqqA00
2IAFA 3DC2A 1YGYA 2IQQA 3DDNA 4RQOA
chains in the Genus database with same CATH superfamily
3K14A 2KTVA 1T0AA 2GLZA 1KNJA 4G4ZA 4HNAA 3KIZA 3JARB 3CCEF 3VI6A 4G4VA 3CCJF 2DYYA 4G4YA 3VOAA 1YITF 4C8GA 5GONB 1X7OA 5CB4B 1ODEA 4O2AB 5LYJA 1RA4A 2Z01A 2RHJA 3VMFB 2ZODA 3I7TA 2JNBA 3QUWA 5KMGB 3IMPA 4X20B 4X1YA 4O4JB 3I3FA 4EI8A 4WBNB 3OBWA 5GANK 1GO0A 3KE1A 5JQGA 1J7HA 3S0WA 4YJ3A 1YJNF 1VQNF 2HP3A 3HKBB 1YI2F 4NUTA 1IPAA 2RHOA 4RHAA 2HQSC 4TV8B 4ZI7A 3I56F 1IV1A 1RQ2A 3WGNA 2Z1TA 4O4LA 1VHAA 3J7AR 3F0FA 1X7PA 4F6RA 1JFFA 5EZYA 5LA6B 3JASA 3LWVC 2AIZP 3V4DA 3NVKE 4ZHVA 5EB1B 2G9IA 3S0HA 3IEWA 2HS3A 2BTQB 3VYTC 2KTUA 1N8RH 1M90H 5IJ0B 5A2QM 5LP6B 5HY2A 5IJ9B 3RYIB 3TD5A 1YJWF 5JCOA 3HWUA 5HP8A 1ONIA 2MQEA 3FPIA 5GIOC 4ZHYB 3WPWA 3JVHA 2UYKA 3IKEA 3ZOPA 3LDTA 4BT6A 2OTMA 3WJPA 3HKDA 2UYPA 3HKEA 4YJ2A 4NWOB 4O4HB 5EYPA 5HY1A 1VQVA 1YJ9F 4BY9D 2OTLF 2UZHA 1IV2A 3G71F 3VIUA 3RE3A 1TUBA 3RYCB 3C9UA 4TUYB 3N2KB 1W41A 4EB6B 1KC8H 1UI9A 3J81M 2BO1A 2HRYA 5ITZA 3E22A 3M1XA 3G6EF 3PAFA 4ZOLB 4HNAB 3E20B 1K9MH 2V9YA 3RYHA 4O2BA 2PMPA 3S0YA 1Q7YH 2AMTA 3FBAA 3CMEF 2BTUA 3K2XA 2AIFA 3C9TA 3MBMA 3E1YA 5EB0A 3VO8A 5JVDA 5JQGB 2ZF8A 3WGJA 4O4IB 2I6DA 3V7QA 3B6NA 5LOVB 3JAKB 3G4SF 4I55B 2VXYA 4XCQA 3WJQA 3HJWC 3I55F 3F0GA 3NVIB 3CCMF 2OTJF 5DCVA 3V3TA 2R751 3VOBA 3OW2F 1H7MA 4O4LB 1Q8RA 1CLIA 2LCAA 4BW0B 3FD6A 1H47A 3RYFA 5HXUA 5MN6A 4F6RB 1JFFB 5EZYB 1SDSA 1VQKF 3WPXA 3MQWA 2HP0B 3OONA 1VQPF 3DC2A 3LFOA 3AGKA 5EIBD 4PWTA 3MDOA 3FD5A 1U3LA 2I6RA 1CK2A 4IIJB 2WALA 3L7QA 1W57A 1R1MA 5C8YA 5EWRA 1U43A 3CYQA 4DRXB 3TD4A 2NMUA 5JH7A 2ZVZA 3T80A 1W5AA 5MN5A 1XHOA 3C9RA 3ZP7A 4DXDA 4NQ3A 4C82A 4LNUB 1RLGA 5J2TA 1RLUA 4B46A 2LBXA 5BMVB 5HY0A 2OZBA 3JALB 1PF5A 2GZLA 4BVRA 1X52A 3WGLA 2QA4F 2CHTA 4BVSA 1GO1A 4G4WA 2ZOVA 1ZWZA 4FFBA 5IT9M 2UYNA 4E6EA 5LP6C 1VK3A 5FNVA 1Q82H 2RB9A 2K1SA 5GIPC 4X1IB 3CCRF 1FFXA 3D00A 3CCQF 2HRUA 3WJRA 3ZO8A 2HS0A 3JARA 4U3JB 2DT4A 2KG4A 2HS4A 5GONA 1TVKB 5CB4A 2QI2A 3CXCF 2QTPA 2VAPA 3UT5A 3CPQA 3QHDA 4X1KB 1COMA 3RYHB 1IV4A 2LBWA 2Q1YA 5KMGA 4X20A 1GX1A 3HAXD 1YIJF 3D54A 5IYZA 3GTZA 3M84A 1QD9A 5KX5B 1QVFF 3R0PA 3N4YA 4O4JA 3N2GB 4WBNA 2VAMA 3JATB 3WGKA 5LXTA 4TV9A 3D01A 4TZZA 3F0EA 3VCZA 2H6LA 3LYBA 1JJ2F 5J2UA 4BVQA 1W3EX 3TD3A 4TV8A 1FNKA 3CC7F 1VQ6F 4ZHQA 5HP7A 1XRGA 2KGWA 3GHZA 2N48A 3CCVF 3F6MA 3HKCB 5EAZA 1KQSF 1VQ7F 1UFYA 1PXWA 5CA1A 5GAPK 4G4XA 2H8EA 1VQOF 4B62A 1YHQF 1W5EA 3RYFB 5LYJB 4BT5A 3Q8HA 1VQMF 5AVMA 3ESJA 4C8IA 4C81A 2IQQA 3O85A 3C8LA 5HXZA 5IJ0A 1OFUA 4C8EA 5IJ9A 4X1YB 3RYIA 2BTOA 4IHJA 4X3MA 3SIUA 3ZP4A 2F9ZC 1Q81H 1VQ5F 2CW4A 5B8FA 1YQNA 1FNJA 5C8YB 1VQ9F 3VYSC 2CHSA 4EI9A 4YJ3B 3WGMA 2R6R1 5CA0A 1XBIA 1VQ4F 2OHWA 3CYPB 4X3LA 1U3PA 4ZI7B 2HX0A 2RHHA 4B5CA 5FJ4C 1K73H 4R40B 3CG6A 3NMUC 1H48A 2CVLA 3OBYA 1VH8A 3RYCA 3JASB 4TUYA 3N2KA 5HY4A 4FFBB 4I50A 4EB6A 2Z1UA 4M8IA 3K12A 3LWPC 1NQ3A 2GVIA 2L26A 5FNVB 3MCQA 3CCSF 3RA5A 1IV3A 1FFXB 4ZOLA 1CN7A 3LWQC 2IG8A 5JCOC 4I4TA 3FFMA 1W5FA 1NJIH 1FSZA 3KJKA 3CC4F 3CC2F 1T0KB 3WXMB 3IR9A 1DBFA 2CZWA 2PHNA 3UT5B 1M1KH 3DDNA 5GINC 2Q1XA 3KHNA 1JY8A 1JD1A 2W8BC 3JCMM 2FGYA 3JAMM 3F0DA 1VQLF 4BT4A 1U40A 5IYZB 3GYQA 4B45A 3HKDB 3HKEB 1SA0A 4YJ2B 3JAWA 5EYPB 3NK6A 1KNKA 5LXTB 4O4IA 4TV9B 3RA6A 5LOVA 3JAKA 3QTYA 1TUBB 4I55A 5J2UB 3IKFA 1W581 4ZHQB 5EIBC 5EO3A 4ZK7A 5ITZB 2FC3A 3E22B 1DT9A 4O2AA 3U0OA 5HWEA 3VTIC 5CA1B 4ZHWA 1W42A 3ELCA 2P6YA 1XV2A 1QAHA 2HP0A 4O2BB 3N4ZA 4BT2A 2ALEA 1K8AH 5MN4A 4IIJA 4BVTA 1YGYA 3EORA 2EWCA 3CB2A 4DRXA 3CCUF 4IHJB 1S72F 2H8CA 2QEXF 3HKBA 2Z1EA 2IAFA 1GZ0A 2Z1FA 5JVDB 4BT3A 3CD6F 1W59A 4LNUA 1SZQA 2LBTA 3PLAC 5BMVA 2B33A 5CA0B 3JALA 3S03A 3J80M 2VGNA 2UYJA 2CWJA 2CSLA 3HTNA 5LA6A 1VQ8F 4G88A 3ERNA 3C9SA 5G4VC 2VGMA 3MCAB 3P0ZA 3IEQA 4X1IA 3P10A 2RHLA 3LWRC 4I50B 5LP6A 2YXZA 2ZAUA 4U3JA 1QVGF 1TVKA 3LMEA 4RQOA 4EI7A 3VYUC 3P4EA 1W55A 4I4TB 2HVYD 4X1KA 1Z5WA 5JH7B 3NK7A 4LCKA 4KWEA 1Z5VA 3M4SA 1QU9A 5KX5A 4C4WC 4O4HA 3N2GA 1W2BF 5J2TB 3S02A 3LWOC 2YYEA 3S06A 4ERHA 3JATA 3ON1A 1W5BA 3CMAF 2VAWA 1E7KA 1SA0B 3JAWB 1KD1H 1W40A 3K0TA 1RQ7A 4U39A 4BT7A 1X25A 3KJJA 2ZVYA 1Q86H 3SIVA 1JN1A 5G4UC 1OAPA 2UYNB 3CCLF 1NMUB 5FLXM 3V7EA 3BYQA 3CPWF 3HKCA
chains in the Genus database with same CATH topology
2IAFA 3DC2A 1YGYA 2IQQA 3DDNA 4RQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IAF A;  3DC2 A;  1YGY A;  2IQQ A;  3DDN A;  4RQO A; 
#chains in the Genus database with same CATH topology
 3K14 A;  2KTV A;  1T0A A;  2GLZ A;  1KNJ A;  4G4Z A;  4HNA A;  3KIZ A;  3JAR B;  3CCE F;  3VI6 A;  4G4V A;  3CCJ F;  2DYY A;  4G4Y A;  3VOA A;  1YIT F;  4C8G A;  5GON B;  1X7O A;  5CB4 B;  1ODE A;  4O2A B;  5LYJ A;  1RA4 A;  2Z01 A;  2RHJ A;  3VMF B;  2ZOD A;  3I7T A;  2JNB A;  3QUW A;  5KMG B;  3IMP A;  4X20 B;  4X1Y A;  4O4J B;  3I3F A;  4EI8 A;  4WBN B;  3OBW A;  5GAN K;  1GO0 A;  3KE1 A;  5JQG A;  1J7H A;  3S0W A;  4YJ3 A;  1YJN F;  1VQN F;  2HP3 A;  3HKB B;  1YI2 F;  4NUT A;  1IPA A;  2RHO A;  4RHA A;  2HQS C;  4TV8 B;  4ZI7 A;  3I56 F;  1IV1 A;  1RQ2 A;  3WGN A;  2Z1T A;  4O4L A;  1VHA A;  3J7A R;  3F0F A;  1X7P A;  4F6R A;  1JFF A;  5EZY A;  5LA6 B;  3JAS A;  3LWV C;  2AIZ P;  3V4D A;  3NVK E;  4ZHV A;  5EB1 B;  2G9I A;  3S0H A;  3IEW A;  2HS3 A;  2BTQ B;  3VYT C;  2KTU A;  1N8R H;  1M90 H;  5IJ0 B;  5A2Q M;  5LP6 B;  5HY2 A;  5IJ9 B;  3RYI B;  3TD5 A;  1YJW F;  5JCO A;  3HWU A;  5HP8 A;  1ONI A;  2MQE A;  3FPI A;  5GIO C;  4ZHY B;  3WPW A;  3JVH A;  2UYK A;  3IKE A;  3ZOP A;  3LDT A;  4BT6 A;  2OTM A;  3WJP A;  3HKD A;  2UYP A;  3HKE A;  4YJ2 A;  4NWO B;  4O4H B;  5EYP A;  5HY1 A;  1VQV A;  1YJ9 F;  4BY9 D;  2OTL F;  2UZH A;  1IV2 A;  3G71 F;  3VIU A;  3RE3 A;  1TUB A;  3RYC B;  3C9U A;  4TUY B;  3N2K B;  1W41 A;  4EB6 B;  1KC8 H;  1UI9 A;  3J81 M;  2BO1 A;  2HRY A;  5ITZ A;  3E22 A;  3M1X A;  3G6E F;  3PAF A;  4ZOL B;  4HNA B;  3E20 B;  1K9M H;  2V9Y A;  3RYH A;  4O2B A;  2PMP A;  3S0Y A;  1Q7Y H;  2AMT A;  3FBA A;  3CME F;  2BTU A;  3K2X A;  2AIF A;  3C9T A;  3MBM A;  3E1Y A;  5EB0 A;  3VO8 A;  5JVD A;  5JQG B;  2ZF8 A;  3WGJ A;  4O4I B;  2I6D A;  3V7Q A;  3B6N A;  5LOV B;  3JAK B;  3G4S F;  4I55 B;  2VXY A;  4XCQ A;  3WJQ A;  3HJW C;  3I55 F;  3F0G A;  3NVI B;  3CCM F;  2OTJ F;  5DCV A;  3V3T A;  2R75 1;  3VOB A;  3OW2 F;  1H7M A;  4O4L B;  1Q8R A;  1CLI A;  2LCA A;  4BW0 B;  3FD6 A;  1H47 A;  3RYF A;  5HXU A;  5MN6 A;  4F6R B;  1JFF B;  5EZY B;  1SDS A;  1VQK F;  3WPX A;  3MQW A;  2HP0 B;  3OON A;  1VQP F;  3DC2 A;  3LFO A;  3AGK A;  5EIB D;  4PWT A;  3MDO A;  3FD5 A;  1U3L A;  2I6R A;  1CK2 A;  4IIJ B;  2WAL A;  3L7Q A;  1W57 A;  1R1M A;  5C8Y A;  5EWR A;  1U43 A;  3CYQ A;  4DRX B;  3TD4 A;  2NMU A;  5JH7 A;  2ZVZ A;  3T80 A;  1W5A A;  5MN5 A;  1XHO A;  3C9R A;  3ZP7 A;  4DXD A;  4NQ3 A;  4C82 A;  4LNU B;  1RLG A;  5J2T A;  1RLU A;  4B46 A;  2LBX A;  5BMV B;  5HY0 A;  2OZB A;  3JAL B;  1PF5 A;  2GZL A;  4BVR A;  1X52 A;  3WGL A;  2QA4 F;  2CHT A;  4BVS A;  1GO1 A;  4G4W A;  2ZOV A;  1ZWZ A;  4FFB A;  5IT9 M;  2UYN A;  4E6E A;  5LP6 C;  1VK3 A;  5FNV A;  1Q82 H;  2RB9 A;  2K1S A;  5GIP C;  4X1I B;  3CCR F;  1FFX A;  3D00 A;  3CCQ F;  2HRU A;  3WJR A;  3ZO8 A;  2HS0 A;  3JAR A;  4U3J B;  2DT4 A;  2KG4 A;  2HS4 A;  5GON A;  1TVK B;  5CB4 A;  2QI2 A;  3CXC F;  2QTP A;  2VAP A;  3UT5 A;  3CPQ A;  3QHD A;  4X1K B;  1COM A;  3RYH B;  1IV4 A;  2LBW A;  2Q1Y A;  5KMG A;  4X20 A;  1GX1 A;  3HAX D;  1YIJ F;  3D54 A;  5IYZ A;  3GTZ A;  3M84 A;  1QD9 A;  5KX5 B;  1QVF F;  3R0P A;  3N4Y A;  4O4J A;  3N2G B;  4WBN A;  2VAM A;  3JAT B;  3WGK A;  5LXT A;  4TV9 A;  3D01 A;  4TZZ A;  3F0E A;  3VCZ A;  2H6L A;  3LYB A;  1JJ2 F;  5J2U A;  4BVQ A;  1W3E X;  3TD3 A;  4TV8 A;  1FNK A;  3CC7 F;  1VQ6 F;  4ZHQ A;  5HP7 A;  1XRG A;  2KGW A;  3GHZ A;  2N48 A;  3CCV F;  3F6M A;  3HKC B;  5EAZ A;  1KQS F;  1VQ7 F;  1UFY A;  1PXW A;  5CA1 A;  5GAP K;  4G4X A;  2H8E A;  1VQO F;  4B62 A;  1YHQ F;  1W5E A;  3RYF B;  5LYJ B;  4BT5 A;  3Q8H A;  1VQM F;  5AVM A;  3ESJ A;  4C8I A;  4C81 A;  2IQQ A;  3O85 A;  3C8L A;  5HXZ A;  5IJ0 A;  1OFU A;  4C8E A;  5IJ9 A;  4X1Y B;  3RYI A;  2BTO A;  4IHJ A;  4X3M A;  3SIU A;  3ZP4 A;  2F9Z C;  1Q81 H;  1VQ5 F;  2CW4 A;  5B8F A;  1YQN A;  1FNJ A;  5C8Y B;  1VQ9 F;  3VYS C;  2CHS A;  4EI9 A;  4YJ3 B;  3WGM A;  2R6R 1;  5CA0 A;  1XBI A;  1VQ4 F;  2OHW A;  3CYP B;  4X3L A;  1U3P A;  4ZI7 B;  2HX0 A;  2RHH A;  4B5C A;  5FJ4 C;  1K73 H;  4R40 B;  3CG6 A;  3NMU C;  1H48 A;  2CVL A;  3OBY A;  1VH8 A;  3RYC A;  3JAS B;  4TUY A;  3N2K A;  5HY4 A;  4FFB B;  4I50 A;  4EB6 A;  2Z1U A;  4M8I A;  3K12 A;  3LWP C;  1NQ3 A;  2GVI A;  2L26 A;  5FNV B;  3MCQ A;  3CCS F;  3RA5 A;  1IV3 A;  1FFX B;  4ZOL A;  1CN7 A;  3LWQ C;  2IG8 A;  5JCO C;  4I4T A;  3FFM A;  1W5F A;  1NJI H;  1FSZ A;  3KJK A;  3CC4 F;  3CC2 F;  1T0K B;  3WXM B;  3IR9 A;  1DBF A;  2CZW A;  2PHN A;  3UT5 B;  1M1K H;  3DDN A;  5GIN C;  2Q1X A;  3KHN A;  1JY8 A;  1JD1 A;  2W8B C;  3JCM M;  2FGY A;  3JAM M;  3F0D A;  1VQL F;  4BT4 A;  1U40 A;  5IYZ B;  3GYQ A;  4B45 A;  3HKD B;  3HKE B;  1SA0 A;  4YJ2 B;  3JAW A;  5EYP B;  3NK6 A;  1KNK A;  5LXT B;  4O4I A;  4TV9 B;  3RA6 A;  5LOV A;  3JAK A;  3QTY A;  1TUB B;  4I55 A;  5J2U B;  3IKF A;  1W58 1;  4ZHQ B;  5EIB C;  5EO3 A;  4ZK7 A;  5ITZ B;  2FC3 A;  3E22 B;  1DT9 A;  4O2A A;  3U0O A;  5HWE A;  3VTI C;  5CA1 B;  4ZHW A;  1W42 A;  3ELC A;  2P6Y A;  1XV2 A;  1QAH A;  2HP0 A;  4O2B B;  3N4Z A;  4BT2 A;  2ALE A;  1K8A H;  5MN4 A;  4IIJ A;  4BVT A;  1YGY A;  3EOR A;  2EWC A;  3CB2 A;  4DRX A;  3CCU F;  4IHJ B;  1S72 F;  2H8C A;  2QEX F;  3HKB A;  2Z1E A;  2IAF A;  1GZ0 A;  2Z1F A;  5JVD B;  4BT3 A;  3CD6 F;  1W59 A;  4LNU A;  1SZQ A;  2LBT A;  3PLA C;  5BMV A;  2B33 A;  5CA0 B;  3JAL A;  3S03 A;  3J80 M;  2VGN A;  2UYJ A;  2CWJ A;  2CSL A;  3HTN A;  5LA6 A;  1VQ8 F;  4G88 A;  3ERN A;  3C9S A;  5G4V C;  2VGM A;  3MCA B;  3P0Z A;  3IEQ A;  4X1I A;  3P10 A;  2RHL A;  3LWR C;  4I50 B;  5LP6 A;  2YXZ A;  2ZAU A;  4U3J A;  1QVG F;  1TVK A;  3LME A;  4RQO A;  4EI7 A;  3VYU C;  3P4E A;  1W55 A;  4I4T B;  2HVY D;  4X1K A;  1Z5W A;  5JH7 B;  3NK7 A;  4LCK A;  4KWE A;  1Z5V A;  3M4S A;  1QU9 A;  5KX5 A;  4C4W C;  4O4H A;  3N2G A;  1W2B F;  5J2T B;  3S02 A;  3LWO C;  2YYE A;  3S06 A;  4ERH A;  3JAT A;  3ON1 A;  1W5B A;  3CMA F;  2VAW A;  1E7K A;  1SA0 B;  3JAW B;  1KD1 H;  1W40 A;  3K0T A;  1RQ7 A;  4U39 A;  4BT7 A;  1X25 A;  3KJJ A;  2ZVY A;  1Q86 H;  3SIV A;  1JN1 A;  5G4U C;  1OAP A;  2UYN B;  3CCL F;  1NMU B;  5FLX M;  3V7E A;  3BYQ A;  3CPW F;  3HKC A; 
#chains in the Genus database with same CATH homology
 2IAF A;  3DC2 A;  1YGY A;  2IQQ A;  3DDN A;  4RQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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