2IQQA

The crystal structure of iron, sulfur-dependent l-serine dehydratase from legionella pneumophila subsp. pneumophila
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
145
structure length
145
Chain Sequence
SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Iron, Sulfur-Dependent L-serine dehydratase
publication title The Crystal Structure of Iron, Sulfur-Dependent L-serine dehydratase from Legionella pneumophila subsp. pneumophila
rcsb
source organism Legionella pneumophila subsp. pneumophila
molecule tags Lyase
total genus 37
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature ec 4.3.1.17: L-serine ammonia-lyase.
pdb deposition date 2006-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03315 SDH_beta Serine dehydratase beta chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 2iqqA00
4RQOA 2IAFA 3DDNA 2IQQA 3DC2A 1YGYA
chains in the Genus database with same CATH superfamily
3E20B 2AIFA 3V7QA 1OFUA 3FBAA 4G4VA 3ZO8A 5HXZA 2P6YA 2OHWA 2N48A 1XRGA 1QVFF 3P0ZA 3VYTC 3JASA 4BT2A 1ZWZA 3OBWA 1UI9A 3WXMB 2IAFA 2LCAA 3N4ZA 3IKFA 4C8IA 3JASB 5JQGA 1U40A 3NK7A 1YI2F 3D00A 5EIBD 3JARA 2Z01A 5EWRA 3LWVC 1X7OA 5J2UB 1DBFA 2LBTA 3V7EA 1CN7A 3HWUA 3C9RA 5C8YA 2YXZA 2VXYA 3JARB 3VTIC 4EI8A 1FSZA 3O85A 1W40A 1GX1A 3G6EF 1H47A 2FGYA 4ZOLA 5C8YB 3CCLF 2DYYA 2ZODA 2CZWA 1RLGA 3JATA 1IV4A 5JCOA 4ZOLB 2HP0A 2FC3A 3VIUA 1H48A 3JATB 2HRYA 3B6NA 1XHOA 2OTLF 3DDNA 3CCRF 2HP0B 2UYJA 4X1IA 1JD1A 1VQNF 3DC2A 4BVRA 3NVKE 4I4TB 1VQ5F 1ODEA 4X1IB 1W5BA 5GINC 2VAPA 3K2XA 5KX5A 3K12A 1VH8A 2VAMA 3GYQA 1T0KB 2KGWA 1JN1A 2VGNA 3RYCA 1U3LA 3M4SA 3CYQA 1FFXA 5G4UC 4XCQA 5KX5B 3CMEF 3V4DA 3KHNA 3TD5A 2IG8A 2K1SA 3RYCB 1NJIH 1FFXB 5JH7A 2PHNA 4B46A 3TD3A 3I3FA 5JH7B 5CB4A 2BTQB 1YHQF 4NWOB 3JVHA 1Z5VA 1Q7YH 5CB4B 3CC4F 3CMAF 3NK6A 3U0OA 3MCAB 2UYNA 1VQMF 4EI9A 3KIZA 3VI6A 2EWCA 5A2QM 5GANK 3ELCA 4O4LA 5LA6A 5LOVA 1VQPF 2UYNB 1W42A 5GAPK 1VQ8F 3CCEF 3LWPC 3CCJF 3N2GA 1RA4A 2CHTA 2RHJA 4O4JA 4O4LB 5LA6B 5LOVB 4PWTA 2Z1FA 3J81M 3N2GB 1RQ2A 5AVMA 4BVSA 3L7QA 4X3LA 4O4JB 2LBXA 3M1XA 1W5FA 3S0HA 3F0FA 1QVGF 3VYSC 3CCMF 1FNJA 1IV3A 2L26A 1X52A 1IV1A 5EIBC 4FFBA 5GONA 3ZP7A 1GO0A 2H6LA 2Z1UA 3CC7F 3MQWA 3RA6A 1W3EX 1YITF 4WBNA 3R0PA 1K8AH 3OBYA 2KG4A 4FFBB 5GONB 4LCKA 3WGKA 3I56F 5HY2A 4IHJA 4WBNB 3JAMM 2ZAUA 2CW4A 3JALA 5IYZA 5J2UA 1NMUB 4TV9A 2UZHA 2HRUA 3NVIB 4IHJB 1YIJF 3MBMA 3QHDA 2HS4A 2GZLA 3JALB 4G88A 5IYZB 4TV9B 2ALEA 5ITZA 2VAWA 4M8IA 2MQEA 4RHAA 5EYPA 2LBWA 2F9ZC 5IT9M 3JAKA 1VQ9F 3AGKA 5ITZB 2QEXF 3SIVA 5EYPB 2BO1A 3D01A 3JAKB 3SIUA 2DT4A 2I6DA 3IKEA 1J7HA 2OTJF 5IJ9A 1DT9A 3VOAA 3T80A 2UYPA 1COMA 4RQOA 3J7AR 5G4VC 5IJ9B 4TZZA 3S0WA 3CC2F 5GIOC 1SDSA 1M1KH 1W5EA 4I4TA 3CCQF 1ONIA 1Q81H 1N8RH 4IIJA 4TV8A 4BT5A 5EB1B 2RHOA 2QTPA 3PAFA 2PMPA 4E6EA 3LDTA 1PF5A 4ZHVA 4IIJB 4TV8B 1FNKA 1KNKA 2VGMA 3HJWC 1CLIA 1X25A 4NUTA 5EAZA 2OTMA 4B45A 5LP6C 3C8LA 2BTUA 3IEQA 3HKDA 5J2TA 3IMPA 3OONA 3RA5A 1W59A 3G4SF 2CVLA 3WGNA 5MN4A 1OAPA 3CPWF 5J2TB 3HKDB 1VQOF 3UT5A 1W41A 2BTOA 5BMVA 4C8EA 2IQQA 2KTVA 2H8CA 1K9MH 3UT5B 5HY4A 2Q1XA 3MCQA 3VMFB 1KC8H 5HWEA 2GVIA 3Q8HA 3RYIA 1U43A 3C9UA 4C82A 5BMVB 1VQKF 1QU9A 1PXWA 3RYHA 1S72F 5LYJA 3LWQC 3OW2F 4BT6A 3RYIB 3VOBA 3LFOA 3GHZA 3RYHB 2W8BC 5LYJB 1R1MA 4O4HA 4ZHQA 1Q82H 2YYEA 4BVQA 1KNJA 2B33A 4O4HB 4ZHYB 3ZP4A 4ZHQB 1NQ3A 2HS3A 3TD4A 5HP7A 4ZI7A 3WGMA 2ZF8A 3I55F 3FFMA 3IEWA 4C8GA 4BW0B 2CSLA 1IV2A 5CA1A 5JVDA 4O2BA 3CCVF 5HY0A 4ZI7B 3JAWA 5IJ0A 3I7TA 3KJJA 5GIPC 1E7KA 5CA1B 1VQVA 5JVDB 4O2BB 2RB9A 3HKEA 3JAWB 5IJ0B 1VQLF 3ESJA 3F6MA 2QI2A 3WPXA 4G4YA 4C81A 3F0EA 3C9SA 4O2AA 3HKEB 1CK2A 1JY8A 3N2KA 1UFYA 5LXTA 2HVYD 5EO3A 4O2AB 3HAXD 5LP6A 2CWJA 3VCZA 5FJ4C 3HKCA 3N2KB 5HXUA 5LXTB 2HP3A 3HKBA 4DXDA 5LP6B 1U3PA 3RYFA 3FD6A 3HKCB 4YJ2A 2OZBA 1X7PA 2GLZA 3QUWA 4U3JA 4BT7A 3HKBB 4DRXA 1W55A 2V9YA 2ZVZA 3CPQA 3VO8A 4YJ3A 3RYFB 4YJ2B 2HX0A 4U3JB 2QA4F 1H7MA 1M90H 4DRXB 4G4ZA 3D54A 4X3MA 4YJ3B 2WALA 4I55A 1TVKA 3S06A 1Q8RA 1YGYA 5FNVA 3P4EA 2G9IA 3PLAC 3C9TA 5JQGB 3ZOPA 3HTNA 3S03A 3JCMM 1VQ7F 5HY1A 3LWOC 5KMGA 1W5AA 3P10A 3K0TA 1TVKB 4I55B 5FNVB 3IR9A 1VQ6F 4G4XA 1GZ0A 2R6R1 4BT4A 3E1YA 5KMGB 3WPWA 1W57A 3S02A 5CA0A 4X1KA 2AIZP 5DCVA 1QD9A 4F6RA 2HQSC 4X20A 5CA0B 3J80M 4X1KB 2H8EA 3WJPA 5HP8A 3EORA 3FPIA 1VHAA 4O4IA 1QAHA 3WGLA 4ERHA 1YJWF 4F6RB 4X20B 2HS0A 1KD1H 1RLUA 1TUBA 4BT3A 1SA0A 5EZYA 3CXCF 1RQ7A 3CYPB 4O4IB 3VYUC 3KJKA 3F0DA 1KQSF 4U39A 1TUBB 1SA0B 5EZYB 1Q86H 4BY9D 1W2BF 4B62A 3RE3A 5B8FA 2Z1TA 2Q1YA 4C4WC 4EB6A 1VQ4F 3V3TA 3F0GA 3GTZA 2ZVYA 4LNUA 1W581 1XBIA 2RHLA 2RHHA 1VK3A 3QTYA 5MN6A 4EB6B 3BYQA 3LMEA 4I50A 3LWRC 4LNUB 3CD6F 2NMUA 1JFFA 5EB0A 5MN5A 3CCSF 2KTUA 2R751 4B5CA 3NMUC 4I50B 3CG6A 1GO1A 2JNBA 3G71F 5JCOC 3WGJA 1JFFB 4TUYA 3LYBA 3CCUF 3K14A 2AMTA 4X1YA 3WJQA 4G4WA 1SZQA 2CHSA 4KWEA 3CB2A 3ON1A 3WJRA 4EI7A 1YQNA 4TUYB 5FLXM 3ERNA 4X1YB 1YJ9F 1YJNF 1IPAA 1JJ2F 2ZOVA 1Z5WA 2UYKA 4HNAA 3E22A 3S0YA 1T0AA 1XV2A 4NQ3A 3KE1A 3M84A 1K73H 4ZK7A 2I6RA 4HNAB 3MDOA 3E22B 4R40B 4BVTA 4ZHWA 2Z1EA 3N4YA 3FD5A
chains in the Genus database with same CATH topology
4RQOA 2IAFA 3DDNA 2IQQA 3DC2A 1YGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RQO A;  2IAF A;  3DDN A;  2IQQ A;  3DC2 A;  1YGY A; 
#chains in the Genus database with same CATH topology
 3E20 B;  2AIF A;  3V7Q A;  1OFU A;  3FBA A;  4G4V A;  3ZO8 A;  5HXZ A;  2P6Y A;  2OHW A;  2N48 A;  1XRG A;  1QVF F;  3P0Z A;  3VYT C;  3JAS A;  4BT2 A;  1ZWZ A;  3OBW A;  1UI9 A;  3WXM B;  2IAF A;  2LCA A;  3N4Z A;  3IKF A;  4C8I A;  3JAS B;  5JQG A;  1U40 A;  3NK7 A;  1YI2 F;  3D00 A;  5EIB D;  3JAR A;  2Z01 A;  5EWR A;  3LWV C;  1X7O A;  5J2U B;  1DBF A;  2LBT A;  3V7E A;  1CN7 A;  3HWU A;  3C9R A;  5C8Y A;  2YXZ A;  2VXY A;  3JAR B;  3VTI C;  4EI8 A;  1FSZ A;  3O85 A;  1W40 A;  1GX1 A;  3G6E F;  1H47 A;  2FGY A;  4ZOL A;  5C8Y B;  3CCL F;  2DYY A;  2ZOD A;  2CZW A;  1RLG A;  3JAT A;  1IV4 A;  5JCO A;  4ZOL B;  2HP0 A;  2FC3 A;  3VIU A;  1H48 A;  3JAT B;  2HRY A;  3B6N A;  1XHO A;  2OTL F;  3DDN A;  3CCR F;  2HP0 B;  2UYJ A;  4X1I A;  1JD1 A;  1VQN F;  3DC2 A;  4BVR A;  3NVK E;  4I4T B;  1VQ5 F;  1ODE A;  4X1I B;  1W5B A;  5GIN C;  2VAP A;  3K2X A;  5KX5 A;  3K12 A;  1VH8 A;  2VAM A;  3GYQ A;  1T0K B;  2KGW A;  1JN1 A;  2VGN A;  3RYC A;  1U3L A;  3M4S A;  3CYQ A;  1FFX A;  5G4U C;  4XCQ A;  5KX5 B;  3CME F;  3V4D A;  3KHN A;  3TD5 A;  2IG8 A;  2K1S A;  3RYC B;  1NJI H;  1FFX B;  5JH7 A;  2PHN A;  4B46 A;  3TD3 A;  3I3F A;  5JH7 B;  5CB4 A;  2BTQ B;  1YHQ F;  4NWO B;  3JVH A;  1Z5V A;  1Q7Y H;  5CB4 B;  3CC4 F;  3CMA F;  3NK6 A;  3U0O A;  3MCA B;  2UYN A;  1VQM F;  4EI9 A;  3KIZ A;  3VI6 A;  2EWC A;  5A2Q M;  5GAN K;  3ELC A;  4O4L A;  5LA6 A;  5LOV A;  1VQP F;  2UYN B;  1W42 A;  5GAP K;  1VQ8 F;  3CCE F;  3LWP C;  3CCJ F;  3N2G A;  1RA4 A;  2CHT A;  2RHJ A;  4O4J A;  4O4L B;  5LA6 B;  5LOV B;  4PWT A;  2Z1F A;  3J81 M;  3N2G B;  1RQ2 A;  5AVM A;  4BVS A;  3L7Q A;  4X3L A;  4O4J B;  2LBX A;  3M1X A;  1W5F A;  3S0H A;  3F0F A;  1QVG F;  3VYS C;  3CCM F;  1FNJ A;  1IV3 A;  2L26 A;  1X52 A;  1IV1 A;  5EIB C;  4FFB A;  5GON A;  3ZP7 A;  1GO0 A;  2H6L A;  2Z1U A;  3CC7 F;  3MQW A;  3RA6 A;  1W3E X;  1YIT F;  4WBN A;  3R0P A;  1K8A H;  3OBY A;  2KG4 A;  4FFB B;  5GON B;  4LCK A;  3WGK A;  3I56 F;  5HY2 A;  4IHJ A;  4WBN B;  3JAM M;  2ZAU A;  2CW4 A;  3JAL A;  5IYZ A;  5J2U A;  1NMU B;  4TV9 A;  2UZH A;  2HRU A;  3NVI B;  4IHJ B;  1YIJ F;  3MBM A;  3QHD A;  2HS4 A;  2GZL A;  3JAL B;  4G88 A;  5IYZ B;  4TV9 B;  2ALE A;  5ITZ A;  2VAW A;  4M8I A;  2MQE A;  4RHA A;  5EYP A;  2LBW A;  2F9Z C;  5IT9 M;  3JAK A;  1VQ9 F;  3AGK A;  5ITZ B;  2QEX F;  3SIV A;  5EYP B;  2BO1 A;  3D01 A;  3JAK B;  3SIU A;  2DT4 A;  2I6D A;  3IKE A;  1J7H A;  2OTJ F;  5IJ9 A;  1DT9 A;  3VOA A;  3T80 A;  2UYP A;  1COM A;  4RQO A;  3J7A R;  5G4V C;  5IJ9 B;  4TZZ A;  3S0W A;  3CC2 F;  5GIO C;  1SDS A;  1M1K H;  1W5E A;  4I4T A;  3CCQ F;  1ONI A;  1Q81 H;  1N8R H;  4IIJ A;  4TV8 A;  4BT5 A;  5EB1 B;  2RHO A;  2QTP A;  3PAF A;  2PMP A;  4E6E A;  3LDT A;  1PF5 A;  4ZHV A;  4IIJ B;  4TV8 B;  1FNK A;  1KNK A;  2VGM A;  3HJW C;  1CLI A;  1X25 A;  4NUT A;  5EAZ A;  2OTM A;  4B45 A;  5LP6 C;  3C8L A;  2BTU A;  3IEQ A;  3HKD A;  5J2T A;  3IMP A;  3OON A;  3RA5 A;  1W59 A;  3G4S F;  2CVL A;  3WGN A;  5MN4 A;  1OAP A;  3CPW F;  5J2T B;  3HKD B;  1VQO F;  3UT5 A;  1W41 A;  2BTO A;  5BMV A;  4C8E A;  2IQQ A;  2KTV A;  2H8C A;  1K9M H;  3UT5 B;  5HY4 A;  2Q1X A;  3MCQ A;  3VMF B;  1KC8 H;  5HWE A;  2GVI A;  3Q8H A;  3RYI A;  1U43 A;  3C9U A;  4C82 A;  5BMV B;  1VQK F;  1QU9 A;  1PXW A;  3RYH A;  1S72 F;  5LYJ A;  3LWQ C;  3OW2 F;  4BT6 A;  3RYI B;  3VOB A;  3LFO A;  3GHZ A;  3RYH B;  2W8B C;  5LYJ B;  1R1M A;  4O4H A;  4ZHQ A;  1Q82 H;  2YYE A;  4BVQ A;  1KNJ A;  2B33 A;  4O4H B;  4ZHY B;  3ZP4 A;  4ZHQ B;  1NQ3 A;  2HS3 A;  3TD4 A;  5HP7 A;  4ZI7 A;  3WGM A;  2ZF8 A;  3I55 F;  3FFM A;  3IEW A;  4C8G A;  4BW0 B;  2CSL A;  1IV2 A;  5CA1 A;  5JVD A;  4O2B A;  3CCV F;  5HY0 A;  4ZI7 B;  3JAW A;  5IJ0 A;  3I7T A;  3KJJ A;  5GIP C;  1E7K A;  5CA1 B;  1VQV A;  5JVD B;  4O2B B;  2RB9 A;  3HKE A;  3JAW B;  5IJ0 B;  1VQL F;  3ESJ A;  3F6M A;  2QI2 A;  3WPX A;  4G4Y A;  4C81 A;  3F0E A;  3C9S A;  4O2A A;  3HKE B;  1CK2 A;  1JY8 A;  3N2K A;  1UFY A;  5LXT A;  2HVY D;  5EO3 A;  4O2A B;  3HAX D;  5LP6 A;  2CWJ A;  3VCZ A;  5FJ4 C;  3HKC A;  3N2K B;  5HXU A;  5LXT B;  2HP3 A;  3HKB A;  4DXD A;  5LP6 B;  1U3P A;  3RYF A;  3FD6 A;  3HKC B;  4YJ2 A;  2OZB A;  1X7P A;  2GLZ A;  3QUW A;  4U3J A;  4BT7 A;  3HKB B;  4DRX A;  1W55 A;  2V9Y A;  2ZVZ A;  3CPQ A;  3VO8 A;  4YJ3 A;  3RYF B;  4YJ2 B;  2HX0 A;  4U3J B;  2QA4 F;  1H7M A;  1M90 H;  4DRX B;  4G4Z A;  3D54 A;  4X3M A;  4YJ3 B;  2WAL A;  4I55 A;  1TVK A;  3S06 A;  1Q8R A;  1YGY A;  5FNV A;  3P4E A;  2G9I A;  3PLA C;  3C9T A;  5JQG B;  3ZOP A;  3HTN A;  3S03 A;  3JCM M;  1VQ7 F;  5HY1 A;  3LWO C;  5KMG A;  1W5A A;  3P10 A;  3K0T A;  1TVK B;  4I55 B;  5FNV B;  3IR9 A;  1VQ6 F;  4G4X A;  1GZ0 A;  2R6R 1;  4BT4 A;  3E1Y A;  5KMG B;  3WPW A;  1W57 A;  3S02 A;  5CA0 A;  4X1K A;  2AIZ P;  5DCV A;  1QD9 A;  4F6R A;  2HQS C;  4X20 A;  5CA0 B;  3J80 M;  4X1K B;  2H8E A;  3WJP A;  5HP8 A;  3EOR A;  3FPI A;  1VHA A;  4O4I A;  1QAH A;  3WGL A;  4ERH A;  1YJW F;  4F6R B;  4X20 B;  2HS0 A;  1KD1 H;  1RLU A;  1TUB A;  4BT3 A;  1SA0 A;  5EZY A;  3CXC F;  1RQ7 A;  3CYP B;  4O4I B;  3VYU C;  3KJK A;  3F0D A;  1KQS F;  4U39 A;  1TUB B;  1SA0 B;  5EZY B;  1Q86 H;  4BY9 D;  1W2B F;  4B62 A;  3RE3 A;  5B8F A;  2Z1T A;  2Q1Y A;  4C4W C;  4EB6 A;  1VQ4 F;  3V3T A;  3F0G A;  3GTZ A;  2ZVY A;  4LNU A;  1W58 1;  1XBI A;  2RHL A;  2RHH A;  1VK3 A;  3QTY A;  5MN6 A;  4EB6 B;  3BYQ A;  3LME A;  4I50 A;  3LWR C;  4LNU B;  3CD6 F;  2NMU A;  1JFF A;  5EB0 A;  5MN5 A;  3CCS F;  2KTU A;  2R75 1;  4B5C A;  3NMU C;  4I50 B;  3CG6 A;  1GO1 A;  2JNB A;  3G71 F;  5JCO C;  3WGJ A;  1JFF B;  4TUY A;  3LYB A;  3CCU F;  3K14 A;  2AMT A;  4X1Y A;  3WJQ A;  4G4W A;  1SZQ A;  2CHS A;  4KWE A;  3CB2 A;  3ON1 A;  3WJR A;  4EI7 A;  1YQN A;  4TUY B;  5FLX M;  3ERN A;  4X1Y B;  1YJ9 F;  1YJN F;  1IPA A;  1JJ2 F;  2ZOV A;  1Z5W A;  2UYK A;  4HNA A;  3E22 A;  3S0Y A;  1T0A A;  1XV2 A;  4NQ3 A;  3KE1 A;  3M84 A;  1K73 H;  4ZK7 A;  2I6R A;  4HNA B;  3MDO A;  3E22 B;  4R40 B;  4BVT A;  4ZHW A;  2Z1E A;  3N4Y A;  3FD5 A; 
#chains in the Genus database with same CATH homology
 4RQO A;  2IAF A;  3DDN A;  2IQQ A;  3DC2 A;  1YGY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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