The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
37
|
sequence length |
145
|
structure length |
145
|
Chain Sequence |
SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Iron, Sulfur-Dependent L-serine dehydratase
|
| publication title |
The Crystal Structure of Iron, Sulfur-Dependent L-serine dehydratase from Legionella pneumophila subsp. pneumophila
rcsb |
| source organism |
Legionella pneumophila subsp. pneumophila
|
| molecule tags |
Lyase
|
| total genus |
37
|
| structure length |
145
|
| sequence length |
145
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.3.1.17: L-serine ammonia-lyase. |
| pdb deposition date | 2006-10-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03315 | SDH_beta | Serine dehydratase beta chain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | D-3-phosphoglycerate dehydrogenase; domain 3 |
#chains in the Genus database with same CATH superfamily 4RQO A; 2IAF A; 3DDN A; 2IQQ A; 3DC2 A; 1YGY A; #chains in the Genus database with same CATH topology 3E20 B; 2AIF A; 3V7Q A; 1OFU A; 3FBA A; 4G4V A; 3ZO8 A; 5HXZ A; 2P6Y A; 2OHW A; 2N48 A; 1XRG A; 1QVF F; 3P0Z A; 3VYT C; 3JAS A; 4BT2 A; 1ZWZ A; 3OBW A; 1UI9 A; 3WXM B; 2IAF A; 2LCA A; 3N4Z A; 3IKF A; 4C8I A; 3JAS B; 5JQG A; 1U40 A; 3NK7 A; 1YI2 F; 3D00 A; 5EIB D; 3JAR A; 2Z01 A; 5EWR A; 3LWV C; 1X7O A; 5J2U B; 1DBF A; 2LBT A; 3V7E A; 1CN7 A; 3HWU A; 3C9R A; 5C8Y A; 2YXZ A; 2VXY A; 3JAR B; 3VTI C; 4EI8 A; 1FSZ A; 3O85 A; 1W40 A; 1GX1 A; 3G6E F; 1H47 A; 2FGY A; 4ZOL A; 5C8Y B; 3CCL F; 2DYY A; 2ZOD A; 2CZW A; 1RLG A; 3JAT A; 1IV4 A; 5JCO A; 4ZOL B; 2HP0 A; 2FC3 A; 3VIU A; 1H48 A; 3JAT B; 2HRY A; 3B6N A; 1XHO A; 2OTL F; 3DDN A; 3CCR F; 2HP0 B; 2UYJ A; 4X1I A; 1JD1 A; 1VQN F; 3DC2 A; 4BVR A; 3NVK E; 4I4T B; 1VQ5 F; 1ODE A; 4X1I B; 1W5B A; 5GIN C; 2VAP A; 3K2X A; 5KX5 A; 3K12 A; 1VH8 A; 2VAM A; 3GYQ A; 1T0K B; 2KGW A; 1JN1 A; 2VGN A; 3RYC A; 1U3L A; 3M4S A; 3CYQ A; 1FFX A; 5G4U C; 4XCQ A; 5KX5 B; 3CME F; 3V4D A; 3KHN A; 3TD5 A; 2IG8 A; 2K1S A; 3RYC B; 1NJI H; 1FFX B; 5JH7 A; 2PHN A; 4B46 A; 3TD3 A; 3I3F A; 5JH7 B; 5CB4 A; 2BTQ B; 1YHQ F; 4NWO B; 3JVH A; 1Z5V A; 1Q7Y H; 5CB4 B; 3CC4 F; 3CMA F; 3NK6 A; 3U0O A; 3MCA B; 2UYN A; 1VQM F; 4EI9 A; 3KIZ A; 3VI6 A; 2EWC A; 5A2Q M; 5GAN K; 3ELC A; 4O4L A; 5LA6 A; 5LOV A; 1VQP F; 2UYN B; 1W42 A; 5GAP K; 1VQ8 F; 3CCE F; 3LWP C; 3CCJ F; 3N2G A; 1RA4 A; 2CHT A; 2RHJ A; 4O4J A; 4O4L B; 5LA6 B; 5LOV B; 4PWT A; 2Z1F A; 3J81 M; 3N2G B; 1RQ2 A; 5AVM A; 4BVS A; 3L7Q A; 4X3L A; 4O4J B; 2LBX A; 3M1X A; 1W5F A; 3S0H A; 3F0F A; 1QVG F; 3VYS C; 3CCM F; 1FNJ A; 1IV3 A; 2L26 A; 1X52 A; 1IV1 A; 5EIB C; 4FFB A; 5GON A; 3ZP7 A; 1GO0 A; 2H6L A; 2Z1U A; 3CC7 F; 3MQW A; 3RA6 A; 1W3E X; 1YIT F; 4WBN A; 3R0P A; 1K8A H; 3OBY A; 2KG4 A; 4FFB B; 5GON B; 4LCK A; 3WGK A; 3I56 F; 5HY2 A; 4IHJ A; 4WBN B; 3JAM M; 2ZAU A; 2CW4 A; 3JAL A; 5IYZ A; 5J2U A; 1NMU B; 4TV9 A; 2UZH A; 2HRU A; 3NVI B; 4IHJ B; 1YIJ F; 3MBM A; 3QHD A; 2HS4 A; 2GZL A; 3JAL B; 4G88 A; 5IYZ B; 4TV9 B; 2ALE A; 5ITZ A; 2VAW A; 4M8I A; 2MQE A; 4RHA A; 5EYP A; 2LBW A; 2F9Z C; 5IT9 M; 3JAK A; 1VQ9 F; 3AGK A; 5ITZ B; 2QEX F; 3SIV A; 5EYP B; 2BO1 A; 3D01 A; 3JAK B; 3SIU A; 2DT4 A; 2I6D A; 3IKE A; 1J7H A; 2OTJ F; 5IJ9 A; 1DT9 A; 3VOA A; 3T80 A; 2UYP A; 1COM A; 4RQO A; 3J7A R; 5G4V C; 5IJ9 B; 4TZZ A; 3S0W A; 3CC2 F; 5GIO C; 1SDS A; 1M1K H; 1W5E A; 4I4T A; 3CCQ F; 1ONI A; 1Q81 H; 1N8R H; 4IIJ A; 4TV8 A; 4BT5 A; 5EB1 B; 2RHO A; 2QTP A; 3PAF A; 2PMP A; 4E6E A; 3LDT A; 1PF5 A; 4ZHV A; 4IIJ B; 4TV8 B; 1FNK A; 1KNK A; 2VGM A; 3HJW C; 1CLI A; 1X25 A; 4NUT A; 5EAZ A; 2OTM A; 4B45 A; 5LP6 C; 3C8L A; 2BTU A; 3IEQ A; 3HKD A; 5J2T A; 3IMP A; 3OON A; 3RA5 A; 1W59 A; 3G4S F; 2CVL A; 3WGN A; 5MN4 A; 1OAP A; 3CPW F; 5J2T B; 3HKD B; 1VQO F; 3UT5 A; 1W41 A; 2BTO A; 5BMV A; 4C8E A; 2IQQ A; 2KTV A; 2H8C A; 1K9M H; 3UT5 B; 5HY4 A; 2Q1X A; 3MCQ A; 3VMF B; 1KC8 H; 5HWE A; 2GVI A; 3Q8H A; 3RYI A; 1U43 A; 3C9U A; 4C82 A; 5BMV B; 1VQK F; 1QU9 A; 1PXW A; 3RYH A; 1S72 F; 5LYJ A; 3LWQ C; 3OW2 F; 4BT6 A; 3RYI B; 3VOB A; 3LFO A; 3GHZ A; 3RYH B; 2W8B C; 5LYJ B; 1R1M A; 4O4H A; 4ZHQ A; 1Q82 H; 2YYE A; 4BVQ A; 1KNJ A; 2B33 A; 4O4H B; 4ZHY B; 3ZP4 A; 4ZHQ B; 1NQ3 A; 2HS3 A; 3TD4 A; 5HP7 A; 4ZI7 A; 3WGM A; 2ZF8 A; 3I55 F; 3FFM A; 3IEW A; 4C8G A; 4BW0 B; 2CSL A; 1IV2 A; 5CA1 A; 5JVD A; 4O2B A; 3CCV F; 5HY0 A; 4ZI7 B; 3JAW A; 5IJ0 A; 3I7T A; 3KJJ A; 5GIP C; 1E7K A; 5CA1 B; 1VQV A; 5JVD B; 4O2B B; 2RB9 A; 3HKE A; 3JAW B; 5IJ0 B; 1VQL F; 3ESJ A; 3F6M A; 2QI2 A; 3WPX A; 4G4Y A; 4C81 A; 3F0E A; 3C9S A; 4O2A A; 3HKE B; 1CK2 A; 1JY8 A; 3N2K A; 1UFY A; 5LXT A; 2HVY D; 5EO3 A; 4O2A B; 3HAX D; 5LP6 A; 2CWJ A; 3VCZ A; 5FJ4 C; 3HKC A; 3N2K B; 5HXU A; 5LXT B; 2HP3 A; 3HKB A; 4DXD A; 5LP6 B; 1U3P A; 3RYF A; 3FD6 A; 3HKC B; 4YJ2 A; 2OZB A; 1X7P A; 2GLZ A; 3QUW A; 4U3J A; 4BT7 A; 3HKB B; 4DRX A; 1W55 A; 2V9Y A; 2ZVZ A; 3CPQ A; 3VO8 A; 4YJ3 A; 3RYF B; 4YJ2 B; 2HX0 A; 4U3J B; 2QA4 F; 1H7M A; 1M90 H; 4DRX B; 4G4Z A; 3D54 A; 4X3M A; 4YJ3 B; 2WAL A; 4I55 A; 1TVK A; 3S06 A; 1Q8R A; 1YGY A; 5FNV A; 3P4E A; 2G9I A; 3PLA C; 3C9T A; 5JQG B; 3ZOP A; 3HTN A; 3S03 A; 3JCM M; 1VQ7 F; 5HY1 A; 3LWO C; 5KMG A; 1W5A A; 3P10 A; 3K0T A; 1TVK B; 4I55 B; 5FNV B; 3IR9 A; 1VQ6 F; 4G4X A; 1GZ0 A; 2R6R 1; 4BT4 A; 3E1Y A; 5KMG B; 3WPW A; 1W57 A; 3S02 A; 5CA0 A; 4X1K A; 2AIZ P; 5DCV A; 1QD9 A; 4F6R A; 2HQS C; 4X20 A; 5CA0 B; 3J80 M; 4X1K B; 2H8E A; 3WJP A; 5HP8 A; 3EOR A; 3FPI A; 1VHA A; 4O4I A; 1QAH A; 3WGL A; 4ERH A; 1YJW F; 4F6R B; 4X20 B; 2HS0 A; 1KD1 H; 1RLU A; 1TUB A; 4BT3 A; 1SA0 A; 5EZY A; 3CXC F; 1RQ7 A; 3CYP B; 4O4I B; 3VYU C; 3KJK A; 3F0D A; 1KQS F; 4U39 A; 1TUB B; 1SA0 B; 5EZY B; 1Q86 H; 4BY9 D; 1W2B F; 4B62 A; 3RE3 A; 5B8F A; 2Z1T A; 2Q1Y A; 4C4W C; 4EB6 A; 1VQ4 F; 3V3T A; 3F0G A; 3GTZ A; 2ZVY A; 4LNU A; 1W58 1; 1XBI A; 2RHL A; 2RHH A; 1VK3 A; 3QTY A; 5MN6 A; 4EB6 B; 3BYQ A; 3LME A; 4I50 A; 3LWR C; 4LNU B; 3CD6 F; 2NMU A; 1JFF A; 5EB0 A; 5MN5 A; 3CCS F; 2KTU A; 2R75 1; 4B5C A; 3NMU C; 4I50 B; 3CG6 A; 1GO1 A; 2JNB A; 3G71 F; 5JCO C; 3WGJ A; 1JFF B; 4TUY A; 3LYB A; 3CCU F; 3K14 A; 2AMT A; 4X1Y A; 3WJQ A; 4G4W A; 1SZQ A; 2CHS A; 4KWE A; 3CB2 A; 3ON1 A; 3WJR A; 4EI7 A; 1YQN A; 4TUY B; 5FLX M; 3ERN A; 4X1Y B; 1YJ9 F; 1YJN F; 1IPA A; 1JJ2 F; 2ZOV A; 1Z5W A; 2UYK A; 4HNA A; 3E22 A; 3S0Y A; 1T0A A; 1XV2 A; 4NQ3 A; 3KE1 A; 3M84 A; 1K73 H; 4ZK7 A; 2I6R A; 4HNA B; 3MDO A; 3E22 B; 4R40 B; 4BVT A; 4ZHW A; 2Z1E A; 3N4Y A; 3FD5 A; #chains in the Genus database with same CATH homology 4RQO A; 2IAF A; 3DDN A; 2IQQ A; 3DC2 A; 1YGY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
