2IAFA

Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
145
structure length
140
Chain Sequence
SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein sdhL
publication title Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila
rcsb
source organism Legionella pneumophila
molecule tags Structural genomics, unknown function
total genus 39
structure length 140
sequence length 145
ec nomenclature
pdb deposition date 2006-09-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 2iafA00
2IQQA 4RQOA 2IAFA 3DC2A 1YGYA 3DDNA
chains in the Genus database with same CATH superfamily
3VYUC 1YIJF 3J81M 1Q81H 1X7PA 1XHOA 2UYNB 5LP6C 3OBYA 1TUBA 5LXTA 2Q1XA 4EB6B 2QA4F 1TVKB 4O4JA 1U3LA 4X1IA 5LXTB 3K12A 5MN5A 1X25A 5JCOC 1RA4A 5HWEA 5CA1B 1DBFA 2VAMA 3JAWB 2RHLA 3NK6A 1VQOF 4TV8A 5C8YA 2HRUA 2EWCA 3HWUA 3NVKE 5FNVA 2HVYD 3CC7F 1Z5WA 1COMA 2HS3A 5FNVB 4EI7A 2ALEA 3ZP4A 4G4VA 2AMTA 1FNKA 4BVSA 2UYPA 3HKDA 4O2AA 5LOVA 4NWOB 4R40B 1K9MH 1QAHA 3FD5A 5LOVB 4ZI7A 3IMPA 1GO0A 3CCUF 2BTQB 3Q8HA 1IV1A 3KJJA 3CCRF 4YJ3A 3WGKA 3QUWA 4RQOA 2LBTA 1W59A 3S03A 4LNUB 4YJ3B 1W3EX 4IHJA 3CC2F 5LYJA 4BT5A 5GAPK 3QTYA 4U3JB 4B62A 5BMVB 3CXCF 3RYIA 4I55B 4X1YA 1RLUA 3LYBA 3RYIB 1W581 3S0WA 3G71F 1T0AA 1Q8RA 4DRXA 3KE1A 3D01A 3ELCA 1FSZA 2QEXF 4M8IA 3OBWA 3HKCB 1PF5A 3JAKA 3I7TA 4TUYB 5EZYB 1H48A 3I55F 3D54A 4O4LA 3JAKB 4C8IA 4O4IB 2IG8A 2VGNA 3RYFA 4O4LB 1FFXB 1W40A 3HJWC 1FNJA 5JVDB 3S0HA 4G4ZA 2BTUA 4X20B 2L26A 5EYPB 1YGYA 1PXWA 3VI6A 3LWRC 3TD5A 1VQ5F 5EO3A 3U0OA 3ZO8A 3E22A 3CCMF 3CCJF 3KIZA 1W41A 2UYJA 4TV9A 1YITF 5DCVA 3JATA 1RQ7A 3P10A 2CW4A 3RA5A 3VCZA 5HXUA 1JD1A 4C82A 3JATB 3GTZA 3HTNA 3N2KA 1VHAA 1X7OA 3HKBA 3CC4F 2ZAUA 1W2BF 3RYHB 4BT6A 3JASB 5LA6B 1YJNF 2HS4A 3C9UA 1GO1A 2IQQA 3GYQA 3VO8A 3N4ZA 3UT5A 5JQGB 3JALA 4BVRA 1M90H 2CWJA 1X52A 5HY2A 1VQVA 4HNAB 1ZWZA 5IYZA 3V7EA 1DT9A 3FD6A 3C8LA 3TD3A 5GANK 4BT4A 2PMPA 2ZODA 3CCLF 3OONA 4FFBB 2Q1YA 3KHNA 5GONA 3MCAB 3JARB 4ZHYB 3MBMA 3WPWA 3LFOA 2UYNA 2BTOA 2F9ZC 2CHTA 2CSLA 4EB6A 1SA0A 1TVKA 2ZVZA 3ESJA 2NMUA 2BO1A 5KMGA 1S72F 1SA0B 2W8BC 4IIJB 3MQWA 4BT3A 5CA1A 1NQ3A 1JFFB 5KMGB 3JAWA 1QVFF 3I3FA 5J2UA 1VQPF 4X1KB 5HXZA 5J2UB 3SIUA 3F0GA 3E1YA 3M84A 5FLXM 3F6MA 4ZOLB 3LDTA 3GHZA 5HY1A 3WJQA 2OTLF 2KTUA 2Z1FA 1NJIH 5IT9M 5G4VC 5JH7A 3M4SA 1H47A 4C4WC 3J7AR 5JH7B 1IV2A 1VQ6F 2HRYA 2HS0A 3CCVF 4LNUA 2P6YA 2HX0A 4XCQA 2ZOVA 4U3JA 3E20B 3F0FA 4NQ3A 3HKEA 5BMVA 3ON1A 4I55A 2Z1TA 4O4HB 4TZZA 3WGNA 3HKEB 4WBNB 2OZBA 3NMUC 3S0YA 3LWQC 1JJ2F 2GZLA 3CG6A 2YXZA 1N8RH 3HKCA 2CZWA 4O2BB 4TUYA 5EZYA 3FBAA 5FJ4C 2KTVA 1KC8H 4B45A 4O4IA 4KWEA 5GIPC 1XRGA 1T0KB 4C8GA 1FFXA 3G4SF 1W5AA 5JVDA 1YI2F 4X20A 5EYPA 1KD1H 1W57A 2LBWA 2CVLA 1RQ2A 3P0ZA 3NVIB 1IV4A 1J7HA 1QVGF 1IPAA 2R6R1 4B5CA 5LP6A 4I50B 3WGJA 3WPXA 3D00A 1CK2A 3T80A 5LP6B 3F0EA 1XBIA 1VQMF 1KNJA 2LCAA 3HAXD 1R1MA 3RYHA 3VMFB 1GX1A 3ERNA 1VK3A 3JASA 5HY4A 5LA6A 4E6EA 5J2TB 3N4YA 1VQ9F 2H8EA 1W5EA 2RHHA 2GLZA 5EWRA 2IAFA 3KJKA 1XV2A 2VAPA 3NK7A 2AIZP 1Q82H 5IJ9B 1YJ9F 1ONIA 4ERHA 5JQGA 2QI2A 5CB4B 1YJWF 2KG4A 3O85A 2YYEA 4HNAA 2RHJA 4NUTA 3CB2A 1W42A 3CCEF 3ZOPA 3CCSF 4C8EA 4FFBA 1VH8A 3CCQF 1IV3A 1GZ0A 1CLIA 3JARA 1NMUB 2VXYA 1K73H 2CHSA 5EAZA 2VAWA 1JN1A 5EIBD 3BYQA 2I6RA 3P4EA 3WGLA 1RLGA 1W5BA 1H7MA 5EIBC 3CPWF 3CYQA 4IIJA 3RYCB 3IR9A 1JFFA 2DYYA 5KX5A 3RE3A 4ZHQB 4YJ2B 4RHAA 2OTJF 2UYKA 3VIUA 3CPQA 1ODEA 2LBXA 2B33A 1QU9A 2ZVYA 4G4YA 5KX5B 4X1KA 5GIOC 2MQEA 2PHNA 2HP3A 1U43A 5HP8A 3G6EF 3IKFA 4BVTA 4ZHVA 3LMEA 2HP0B 4ZOLA 3WGMA 3LWPC 3C9TA 3C9SA 2N48A 2H6LA 1Q86H 2V9YA 2Z1EA 2VGMA 3TD4A 1TUBB 3WJPA 3CMAF 4ZHWA 4O4JB 1Z5VA 4G4XA 1VQ7F 4X1IB 3V4DA 3J80M 4G88A 3MCQA 3LWVC 3ZP7A 5G4UC 3SIVA 1SZQA 2RB9A 5GINC 3V7QA 5EB1B 4BT2A 2R751 4TV8B 3VTIC 5C8YB 1E7KA 4U39A 4O4HA 2H8CA 4WBNA 5HY0A 5B8FA 3HKDB 4O2AB 3CYPB 4O2BA 3LWOC 3K2XA 2RHOA 4ZI7B 3OW2F 1KQSF 3M1XA 1UI9A 1M1KH 4C81A 4ZK7A 2WALA 3JCMM 4BW0B 4BY9D 3L7QA 3S06A 3K14A 4IHJB 2KGWA 3IEQA 5AVMA 3RA6A 3K0TA 5LYJB 1VQLF 3R0PA 5IJ0A 5HP7A 4I50A 3I56F 4X1YB 3JVHA 3V3TA 4EI8A 2GVIA 3FPIA 5IJ0B 4F6RA 2OHWA 3FFMA 4DRXB 4B46A 4F6RB 3F0DA 2JNBA 3PAFA 5MN6A 1U3PA 5JCOA 1VQKF 1VQ4F 3VYTC 5J2TA 1VQ8F 2G9IA 3RYFB 3VOBA 1K8AH 5IJ9A 3DC2A 4EI9A 5CA0A 2K1SA 5CB4A 2DT4A 3WJRA 2QTPA 1QD9A 2Z01A 1UFYA 4LCKA 5CA0B 4BT7A 3MDOA 4X3LA 1W5FA 3CMEF 1CN7A 3E22B 3WXMB 3JAMM 3EORA 4TV9B 3AGKA 1SDSA 4G4WA 1OFUA 2OTMA 5A2QM 3S02A 4I4TA 2FGYA 3QHDA 3N2KB 1VQNF 4I4TB 3HKBB 2UZHA 1U40A 2HQSC 3C9RA 1Q7YH 4BVQA 5MN4A 2ZF8A 1JY8A 3RYCA 3IEWA 3CD6F 1OAPA 1W55A 2Z1UA 3B6NA 4ZHQA 4YJ2A 3PLAC 5ITZA 1YHQF 4X3MA 3VOAA 3UT5B 3JALB 5ITZB 3N2GA 3VYSC 1KNKA 3IKEA 5IYZB 5EB0A 3N2GB 4DXDA 2AIFA 2HP0A 2I6DA 4PWTA 3DDNA 1YQNA 5GONB 2FC3A
chains in the Genus database with same CATH topology
2IQQA 4RQOA 2IAFA 3DC2A 1YGYA 3DDNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IQQ A;  4RQO A;  2IAF A;  3DC2 A;  1YGY A;  3DDN A; 
#chains in the Genus database with same CATH topology
 3VYU C;  1YIJ F;  3J81 M;  1Q81 H;  1X7P A;  1XHO A;  2UYN B;  5LP6 C;  3OBY A;  1TUB A;  5LXT A;  2Q1X A;  4EB6 B;  2QA4 F;  1TVK B;  4O4J A;  1U3L A;  4X1I A;  5LXT B;  3K12 A;  5MN5 A;  1X25 A;  5JCO C;  1RA4 A;  5HWE A;  5CA1 B;  1DBF A;  2VAM A;  3JAW B;  2RHL A;  3NK6 A;  1VQO F;  4TV8 A;  5C8Y A;  2HRU A;  2EWC A;  3HWU A;  3NVK E;  5FNV A;  2HVY D;  3CC7 F;  1Z5W A;  1COM A;  2HS3 A;  5FNV B;  4EI7 A;  2ALE A;  3ZP4 A;  4G4V A;  2AMT A;  1FNK A;  4BVS A;  2UYP A;  3HKD A;  4O2A A;  5LOV A;  4NWO B;  4R40 B;  1K9M H;  1QAH A;  3FD5 A;  5LOV B;  4ZI7 A;  3IMP A;  1GO0 A;  3CCU F;  2BTQ B;  3Q8H A;  1IV1 A;  3KJJ A;  3CCR F;  4YJ3 A;  3WGK A;  3QUW A;  4RQO A;  2LBT A;  1W59 A;  3S03 A;  4LNU B;  4YJ3 B;  1W3E X;  4IHJ A;  3CC2 F;  5LYJ A;  4BT5 A;  5GAP K;  3QTY A;  4U3J B;  4B62 A;  5BMV B;  3CXC F;  3RYI A;  4I55 B;  4X1Y A;  1RLU A;  3LYB A;  3RYI B;  1W58 1;  3S0W A;  3G71 F;  1T0A A;  1Q8R A;  4DRX A;  3KE1 A;  3D01 A;  3ELC A;  1FSZ A;  2QEX F;  4M8I A;  3OBW A;  3HKC B;  1PF5 A;  3JAK A;  3I7T A;  4TUY B;  5EZY B;  1H48 A;  3I55 F;  3D54 A;  4O4L A;  3JAK B;  4C8I A;  4O4I B;  2IG8 A;  2VGN A;  3RYF A;  4O4L B;  1FFX B;  1W40 A;  3HJW C;  1FNJ A;  5JVD B;  3S0H A;  4G4Z A;  2BTU A;  4X20 B;  2L26 A;  5EYP B;  1YGY A;  1PXW A;  3VI6 A;  3LWR C;  3TD5 A;  1VQ5 F;  5EO3 A;  3U0O A;  3ZO8 A;  3E22 A;  3CCM F;  3CCJ F;  3KIZ A;  1W41 A;  2UYJ A;  4TV9 A;  1YIT F;  5DCV A;  3JAT A;  1RQ7 A;  3P10 A;  2CW4 A;  3RA5 A;  3VCZ A;  5HXU A;  1JD1 A;  4C82 A;  3JAT B;  3GTZ A;  3HTN A;  3N2K A;  1VHA A;  1X7O A;  3HKB A;  3CC4 F;  2ZAU A;  1W2B F;  3RYH B;  4BT6 A;  3JAS B;  5LA6 B;  1YJN F;  2HS4 A;  3C9U A;  1GO1 A;  2IQQ A;  3GYQ A;  3VO8 A;  3N4Z A;  3UT5 A;  5JQG B;  3JAL A;  4BVR A;  1M90 H;  2CWJ A;  1X52 A;  5HY2 A;  1VQV A;  4HNA B;  1ZWZ A;  5IYZ A;  3V7E A;  1DT9 A;  3FD6 A;  3C8L A;  3TD3 A;  5GAN K;  4BT4 A;  2PMP A;  2ZOD A;  3CCL F;  3OON A;  4FFB B;  2Q1Y A;  3KHN A;  5GON A;  3MCA B;  3JAR B;  4ZHY B;  3MBM A;  3WPW A;  3LFO A;  2UYN A;  2BTO A;  2F9Z C;  2CHT A;  2CSL A;  4EB6 A;  1SA0 A;  1TVK A;  2ZVZ A;  3ESJ A;  2NMU A;  2BO1 A;  5KMG A;  1S72 F;  1SA0 B;  2W8B C;  4IIJ B;  3MQW A;  4BT3 A;  5CA1 A;  1NQ3 A;  1JFF B;  5KMG B;  3JAW A;  1QVF F;  3I3F A;  5J2U A;  1VQP F;  4X1K B;  5HXZ A;  5J2U B;  3SIU A;  3F0G A;  3E1Y A;  3M84 A;  5FLX M;  3F6M A;  4ZOL B;  3LDT A;  3GHZ A;  5HY1 A;  3WJQ A;  2OTL F;  2KTU A;  2Z1F A;  1NJI H;  5IT9 M;  5G4V C;  5JH7 A;  3M4S A;  1H47 A;  4C4W C;  3J7A R;  5JH7 B;  1IV2 A;  1VQ6 F;  2HRY A;  2HS0 A;  3CCV F;  4LNU A;  2P6Y A;  2HX0 A;  4XCQ A;  2ZOV A;  4U3J A;  3E20 B;  3F0F A;  4NQ3 A;  3HKE A;  5BMV A;  3ON1 A;  4I55 A;  2Z1T A;  4O4H B;  4TZZ A;  3WGN A;  3HKE B;  4WBN B;  2OZB A;  3NMU C;  3S0Y A;  3LWQ C;  1JJ2 F;  2GZL A;  3CG6 A;  2YXZ A;  1N8R H;  3HKC A;  2CZW A;  4O2B B;  4TUY A;  5EZY A;  3FBA A;  5FJ4 C;  2KTV A;  1KC8 H;  4B45 A;  4O4I A;  4KWE A;  5GIP C;  1XRG A;  1T0K B;  4C8G A;  1FFX A;  3G4S F;  1W5A A;  5JVD A;  1YI2 F;  4X20 A;  5EYP A;  1KD1 H;  1W57 A;  2LBW A;  2CVL A;  1RQ2 A;  3P0Z A;  3NVI B;  1IV4 A;  1J7H A;  1QVG F;  1IPA A;  2R6R 1;  4B5C A;  5LP6 A;  4I50 B;  3WGJ A;  3WPX A;  3D00 A;  1CK2 A;  3T80 A;  5LP6 B;  3F0E A;  1XBI A;  1VQM F;  1KNJ A;  2LCA A;  3HAX D;  1R1M A;  3RYH A;  3VMF B;  1GX1 A;  3ERN A;  1VK3 A;  3JAS A;  5HY4 A;  5LA6 A;  4E6E A;  5J2T B;  3N4Y A;  1VQ9 F;  2H8E A;  1W5E A;  2RHH A;  2GLZ A;  5EWR A;  2IAF A;  3KJK A;  1XV2 A;  2VAP A;  3NK7 A;  2AIZ P;  1Q82 H;  5IJ9 B;  1YJ9 F;  1ONI A;  4ERH A;  5JQG A;  2QI2 A;  5CB4 B;  1YJW F;  2KG4 A;  3O85 A;  2YYE A;  4HNA A;  2RHJ A;  4NUT A;  3CB2 A;  1W42 A;  3CCE F;  3ZOP A;  3CCS F;  4C8E A;  4FFB A;  1VH8 A;  3CCQ F;  1IV3 A;  1GZ0 A;  1CLI A;  3JAR A;  1NMU B;  2VXY A;  1K73 H;  2CHS A;  5EAZ A;  2VAW A;  1JN1 A;  5EIB D;  3BYQ A;  2I6R A;  3P4E A;  3WGL A;  1RLG A;  1W5B A;  1H7M A;  5EIB C;  3CPW F;  3CYQ A;  4IIJ A;  3RYC B;  3IR9 A;  1JFF A;  2DYY A;  5KX5 A;  3RE3 A;  4ZHQ B;  4YJ2 B;  4RHA A;  2OTJ F;  2UYK A;  3VIU A;  3CPQ A;  1ODE A;  2LBX A;  2B33 A;  1QU9 A;  2ZVY A;  4G4Y A;  5KX5 B;  4X1K A;  5GIO C;  2MQE A;  2PHN A;  2HP3 A;  1U43 A;  5HP8 A;  3G6E F;  3IKF A;  4BVT A;  4ZHV A;  3LME A;  2HP0 B;  4ZOL A;  3WGM A;  3LWP C;  3C9T A;  3C9S A;  2N48 A;  2H6L A;  1Q86 H;  2V9Y A;  2Z1E A;  2VGM A;  3TD4 A;  1TUB B;  3WJP A;  3CMA F;  4ZHW A;  4O4J B;  1Z5V A;  4G4X A;  1VQ7 F;  4X1I B;  3V4D A;  3J80 M;  4G88 A;  3MCQ A;  3LWV C;  3ZP7 A;  5G4U C;  3SIV A;  1SZQ A;  2RB9 A;  5GIN C;  3V7Q A;  5EB1 B;  4BT2 A;  2R75 1;  4TV8 B;  3VTI C;  5C8Y B;  1E7K A;  4U39 A;  4O4H A;  2H8C A;  4WBN A;  5HY0 A;  5B8F A;  3HKD B;  4O2A B;  3CYP B;  4O2B A;  3LWO C;  3K2X A;  2RHO A;  4ZI7 B;  3OW2 F;  1KQS F;  3M1X A;  1UI9 A;  1M1K H;  4C81 A;  4ZK7 A;  2WAL A;  3JCM M;  4BW0 B;  4BY9 D;  3L7Q A;  3S06 A;  3K14 A;  4IHJ B;  2KGW A;  3IEQ A;  5AVM A;  3RA6 A;  3K0T A;  5LYJ B;  1VQL F;  3R0P A;  5IJ0 A;  5HP7 A;  4I50 A;  3I56 F;  4X1Y B;  3JVH A;  3V3T A;  4EI8 A;  2GVI A;  3FPI A;  5IJ0 B;  4F6R A;  2OHW A;  3FFM A;  4DRX B;  4B46 A;  4F6R B;  3F0D A;  2JNB A;  3PAF A;  5MN6 A;  1U3P A;  5JCO A;  1VQK F;  1VQ4 F;  3VYT C;  5J2T A;  1VQ8 F;  2G9I A;  3RYF B;  3VOB A;  1K8A H;  5IJ9 A;  3DC2 A;  4EI9 A;  5CA0 A;  2K1S A;  5CB4 A;  2DT4 A;  3WJR A;  2QTP A;  1QD9 A;  2Z01 A;  1UFY A;  4LCK A;  5CA0 B;  4BT7 A;  3MDO A;  4X3L A;  1W5F A;  3CME F;  1CN7 A;  3E22 B;  3WXM B;  3JAM M;  3EOR A;  4TV9 B;  3AGK A;  1SDS A;  4G4W A;  1OFU A;  2OTM A;  5A2Q M;  3S02 A;  4I4T A;  2FGY A;  3QHD A;  3N2K B;  1VQN F;  4I4T B;  3HKB B;  2UZH A;  1U40 A;  2HQS C;  3C9R A;  1Q7Y H;  4BVQ A;  5MN4 A;  2ZF8 A;  1JY8 A;  3RYC A;  3IEW A;  3CD6 F;  1OAP A;  1W55 A;  2Z1U A;  3B6N A;  4ZHQ A;  4YJ2 A;  3PLA C;  5ITZ A;  1YHQ F;  4X3M A;  3VOA A;  3UT5 B;  3JAL B;  5ITZ B;  3N2G A;  3VYS C;  1KNK A;  3IKE A;  5IYZ B;  5EB0 A;  3N2G B;  4DXD A;  2AIF A;  2HP0 A;  2I6D A;  4PWT A;  3DDN A;  1YQN A;  5GON B;  2FC3 A; 
#chains in the Genus database with same CATH homology
 2IQQ A;  4RQO A;  2IAF A;  3DC2 A;  1YGY A;  3DDN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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