2IAFA

Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
145
structure length
140
Chain Sequence
SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Legionella pneumophila
publication title Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila
rcsb
molecule keywords Hypothetical protein sdhL
total genus 39
structure length 140
sequence length 145
ec nomenclature
pdb deposition date 2006-09-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 2iafA00
2IAFA 3DC2A 2IQQA 4RQOA 3DDNA 1YGYA
chains in the Genus database with same CATH superfamily
4LNUA 2OZBA 4TV8B 4E6EA 5EB1B 5EB0A 2VAWA 3TD5A 2HS0A 2QEXF 3F6MA 3CCSF 1W581 5AVMA 3ON1A 2ZF8A 4R40B 4BT6A 4ZHYB 3VYTC 3IMPA 3M4SA 2OTMA 1OAPA 1YITF 3LMEA 5LP6B 5LP6C 4ZOLA 4TV9A 4O4LA 3KHNA 1GO0A 1W57A 2Z1EA 3KIZA 3V3TA 3LDTA 4BVQA 4X1IA 3VTIC 5MN4A 1QAHA 3CCUF 3WJRA 5JVDA 1RLUA 2HP0B 5LXTB 1ODEA 1FFXB 3JAWB 5JH7B 4I55B 1YQNA 3I7TA 5JQGA 5GONA 5BMVB 3F0GA 5G4UC 2CW4A 4B45A 1CK2A 2AMTA 2HX0A 5ITZA 2UYPA 3JATB 1VQ5F 3M1XA 2Z1TA 3CYPB 4FFBA 1U3PA 4I4TB 3T80A 4U3JA 4U39A 4KWEA 2CSLA 3E22A 5LYJB 5J2TB 3Q8HA 2ZODA 3NMUC 1XHOA 3IKEA 5IJ0A 1U40A 3MQWA 4ZI7A 1H7MA 4C8IA 3JASB 1FSZA 3CC2F 3C9UA 3C9SA 1NQ3A 3LWRC 1TUBB 4B5CA 3VIUA 3K0TA 1YJWF 1TVKA 1X7PA 5FNVA 2VAPA 5EYPA 3P10A 3OONA 4HNAB 3ERNA 2LCAA 4NUTA 4TV8A 2I6DA 1KNKA 1K9MH 3WPXA 3DDNA 3JALB 1ZWZA 3CCLF 3CCEF 5GINC 5EIBC 3WPWA 1PXWA 2VGMA 4EI7A 1W5FA 3I3FA 1IV2A 1W42A 2ZAUA 2Z01A 3HKBA 3K2XA 3NK7A 1JFFA 4O4HB 1VQMF 1W5EA 4TUYB 1NJIH 2CZWA 2R6R1 4NWOB 2OTJF 5IYZB 1IV4A 5IT9M 1UI9A 5KMGB 4G4ZA 3CPWF 2UYKA 4XCQA 5GIPC 1OFUA 2GLZA 3G6EF 3CCQF 5J2UB 3WJQA 5EWRA 1SDSA 4ERHA 3OW2F 1JJ2F 3OBWA 1ONIA 1KQSF 2HP0A 5LXTA 3N4ZA 1FFXA 3JAWA 5JH7A 3N2GB 3C9TA 4I55A 3KE1A 3ELCA 5BMVA 2QA4F 4EB6A 3LFOA 1VQ7F 3IR9A 3GYQA 3CMEF 3FPIA 1RQ7A 3CG6A 1IPAA 3VCZA 5KX5A 1H48A 3JATA 4I4TA 5MN5A 1QU9A 5LA6B 4DRXB 5HXUA 3F0FA 1KNJA 4RQOA 5LYJA 5J2TA 3PLAC 1J7HA 4YJ2A 1DT9A 4C4WC 1W59A 3JAKB 3V7EA 3ESJA 2PMPA 4YJ3B 4ZHQB 1R1MA 4BY9D 2CWJA 3RYCB 4C82A 4X1KB 5C8YA 4BT5A 3JASA 2Q1XA 2IG8A 3KJKA 2RHHA 3LWVC 5FLXM 1JN1A 1W5BA 4G4YA 1X25A 2LBTA 3HKCA 1TUBA 2DT4A 1Q81H 5EO3A 3JAMM 3S06A 1KD1H 1DBFA 2CHTA 1W5AA 5CA1B 1RQ2A 3JVHA 3M84A 4HNAA 5JCOA 3RYHB 3ZP7A 2NMUA 5CB4B 3F0DA 3UT5B 1E7KA 3PAFA 3MDOA 4C8EA 5B8FA 1Q7YH 5G4VC 4B62A 5GIOC 5HY1A 3VOBA 3RYFA 3JALA 4TZZA 2OTLF 2GVIA 5IJ9B 3WJPA 1W2BF 4BW0B 3C8LA 3FD6A 4X1YB 4ZK7A 4TUYA 2Q1YA 2LBXA 5IYZA 2HRUA 1VQLF 3RE3A 4IHJB 1VQ4F 3I55F 3CYQA 1T0KB 4O2AB 3I56F 1XV2A 3S03A 1VH8A 2HP3A 3S0HA 2IQQA 4X3LA 3RA5A 1W41A 3FBAA 1GZ0A 3WXMB 4EI8A 3NVIB 2H6LA 1KC8H 5CA0A 2UYNB 3LWOC 2UYJA 3IKFA 1GX1A 1QVFF 4X3MA 4BT7A 3P0ZA 1VQ6F 5FJ4C 3LYBA 3IEQA 2V9YA 2QTPA 5HWEA 3TD4A 3U0OA 5LA6A 1YI2F 5HY2A 1JY8A 3CCJF 1H47A 3QTYA 5A2QM 2CHSA 3MCAB 4C8GA 1M90H 5HY0A 3JAKA 4ZOLB 2RB9A 1CLIA 4ZHQA 5EZYB 3HKDB 1W40A 4O2BB 2VGNA 3K12A 3FD5A 2BTOA 4X1KA 3LWPC 2YXZA 3WGKA 3HKEB 1QD9A 2RHJA 2W8BC 5LP6A 3AGKA 4O4JB 1YJNF 2HS3A 3CB2A 2HRYA 2ALEA 5JQGB 3DC2A 3RYHA 4F6RB 1W55A 4O4IB 3HAXD 3MBMA 5CB4A 3UT5A 5LOVB 2KG4A 1IV3A 2MQEA 4M8IA 3VOAA 1GO1A 2DYYA 3VYSC 2KTVA 4U3JB 1M1KH 3JARB 4BT4A 3V7QA 1VHAA 3SIVA 1IV1A 5IJ9A 2BTUA 2GZLA 4PWTA 5EAZA 3VYUC 3ZO8A 2F9ZC 3ZP4A 2FGYA 1T0AA 3J7AR 4ZI7B 4B46A 5GANK 2IAFA 2R751 2LBWA 3WGNA 4IHJA 3WGLA 4I50B 2ZVZA 3NK6A 3S0YA 1YHQF 2QI2A 1TVKB 3N2KB 3LWQC 1VQNF 1X7OA 2Z1FA 4BVRA 3K14A 3P4EA 1Z5WA 3MCQA 2PHNA 2JNBA 3S0WA 1VQKF 1K73H 4WBNB 4G4VA 3CCMF 3O85A 4NQ3A 2UYNA 2L26A 3D00A 1QVGF 1YGYA 1SZQA 2RHLA 2H8CA 1W3EX 4DXDA 3CXCF 2HVYD 4G88A 3F0EA 3VMFB 4IIJB 3HKBB 3CCVF 3B6NA 2G9IA 1JFFB 5MN6A 3OBYA 2AIFA 1VQOF 2RHOA 3N4YA 1RLGA 2AIZP 1Q8RA 4ZHWA 3GHZA 4LCKA 5EZYA 3HKDA 3G71F 2N48A 3L7QA 2CVLA 4O2BA 3SIUA 4RHAA 3RA6A 4BT2A 3G4SF 4O4HA 1CN7A 2YYEA 2EWCA 2H8EA 3HKEA 3ZOPA 3D01A 4G4WA 5KMGA 1VQ8F 4O4JA 3CC7F 3E1YA 1NMUB 1SA0B 4X20B 3R0PA 3J81M 1XRGA 3RYIB 5HY4A 2VXYA 4EB6B 1FNKA 5J2UA 1U43A 4F6RA 1VQ9F 4O4IA 1YIJF 5KX5B 5LOVA 1YJ9F 5GAPK 3VO8A 2ZVYA 1PF5A 4LNUB 4BVTA 3N2GA 2KGWA 3QUWA 3GTZA 3JARA 1UFYA 2KTUA 4YJ2B 3V4DA 1VQVA 1N8RH 5EIBD 3CMAF 3HJWC 2OHWA 3VI6A 5HXZA 3WGMA 4DRXA 5C8YB 3NVKE 3C9RA 3CCRF 2HS4A 3CC4F 4I50A 3J80M 3HKCB 3E20B 4TV9B 4O4LB 4YJ3A 1Q82H 2VAMA 3N2KA 2BTQB 1VK3A 5HP8A 5HP7A 3CD6F 3TD3A 3RYCA 3HTNA 3FFMA 4X1IB 2WALA 5JCOC 4WBNA 4BT3A 2HQSC 5DCVA 1COMA 3IEWA 1RA4A 5JVDB 1JD1A 5GONB 2Z1UA 3RYFB 4ZHVA 5CA1A 2BO1A 1Q86H 1Z5VA 1K8AH 3HWUA 5ITZB 1VQPF 4EI9A 4IIJA 4FFBB 3S02A 3EORA 2I6RA 2K1SA 3BYQA 2UZHA 3E22B 1FNJA 1U3LA 2FC3A 4X1YA 5IJ0B 2ZOVA 3CPQA 4G4XA 1XBIA 1SA0A 4X20A 4O2AA 1S72F 3WGJA 3RYIA 3KJJA 5CA0B 5FNVB 1X52A 5EYPB 3JCMM 4C81A 4BVSA 2P6YA 3QHDA 3D54A 2B33A
chains in the Genus database with same CATH topology
2IAFA 3DC2A 2IQQA 4RQOA 3DDNA 1YGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IAF A;  3DC2 A;  2IQQ A;  4RQO A;  3DDN A;  1YGY A; 
#chains in the Genus database with same CATH topology
 4LNU A;  2OZB A;  4TV8 B;  4E6E A;  5EB1 B;  5EB0 A;  2VAW A;  3TD5 A;  2HS0 A;  2QEX F;  3F6M A;  3CCS F;  1W58 1;  5AVM A;  3ON1 A;  2ZF8 A;  4R40 B;  4BT6 A;  4ZHY B;  3VYT C;  3IMP A;  3M4S A;  2OTM A;  1OAP A;  1YIT F;  3LME A;  5LP6 B;  5LP6 C;  4ZOL A;  4TV9 A;  4O4L A;  3KHN A;  1GO0 A;  1W57 A;  2Z1E A;  3KIZ A;  3V3T A;  3LDT A;  4BVQ A;  4X1I A;  3VTI C;  5MN4 A;  1QAH A;  3CCU F;  3WJR A;  5JVD A;  1RLU A;  2HP0 B;  5LXT B;  1ODE A;  1FFX B;  3JAW B;  5JH7 B;  4I55 B;  1YQN A;  3I7T A;  5JQG A;  5GON A;  5BMV B;  3F0G A;  5G4U C;  2CW4 A;  4B45 A;  1CK2 A;  2AMT A;  2HX0 A;  5ITZ A;  2UYP A;  3JAT B;  1VQ5 F;  3M1X A;  2Z1T A;  3CYP B;  4FFB A;  1U3P A;  4I4T B;  3T80 A;  4U3J A;  4U39 A;  4KWE A;  2CSL A;  3E22 A;  5LYJ B;  5J2T B;  3Q8H A;  2ZOD A;  3NMU C;  1XHO A;  3IKE A;  5IJ0 A;  1U40 A;  3MQW A;  4ZI7 A;  1H7M A;  4C8I A;  3JAS B;  1FSZ A;  3CC2 F;  3C9U A;  3C9S A;  1NQ3 A;  3LWR C;  1TUB B;  4B5C A;  3VIU A;  3K0T A;  1YJW F;  1TVK A;  1X7P A;  5FNV A;  2VAP A;  5EYP A;  3P10 A;  3OON A;  4HNA B;  3ERN A;  2LCA A;  4NUT A;  4TV8 A;  2I6D A;  1KNK A;  1K9M H;  3WPX A;  3DDN A;  3JAL B;  1ZWZ A;  3CCL F;  3CCE F;  5GIN C;  5EIB C;  3WPW A;  1PXW A;  2VGM A;  4EI7 A;  1W5F A;  3I3F A;  1IV2 A;  1W42 A;  2ZAU A;  2Z01 A;  3HKB A;  3K2X A;  3NK7 A;  1JFF A;  4O4H B;  1VQM F;  1W5E A;  4TUY B;  1NJI H;  2CZW A;  2R6R 1;  4NWO B;  2OTJ F;  5IYZ B;  1IV4 A;  5IT9 M;  1UI9 A;  5KMG B;  4G4Z A;  3CPW F;  2UYK A;  4XCQ A;  5GIP C;  1OFU A;  2GLZ A;  3G6E F;  3CCQ F;  5J2U B;  3WJQ A;  5EWR A;  1SDS A;  4ERH A;  3OW2 F;  1JJ2 F;  3OBW A;  1ONI A;  1KQS F;  2HP0 A;  5LXT A;  3N4Z A;  1FFX A;  3JAW A;  5JH7 A;  3N2G B;  3C9T A;  4I55 A;  3KE1 A;  3ELC A;  5BMV A;  2QA4 F;  4EB6 A;  3LFO A;  1VQ7 F;  3IR9 A;  3GYQ A;  3CME F;  3FPI A;  1RQ7 A;  3CG6 A;  1IPA A;  3VCZ A;  5KX5 A;  1H48 A;  3JAT A;  4I4T A;  5MN5 A;  1QU9 A;  5LA6 B;  4DRX B;  5HXU A;  3F0F A;  1KNJ A;  4RQO A;  5LYJ A;  5J2T A;  3PLA C;  1J7H A;  4YJ2 A;  1DT9 A;  4C4W C;  1W59 A;  3JAK B;  3V7E A;  3ESJ A;  2PMP A;  4YJ3 B;  4ZHQ B;  1R1M A;  4BY9 D;  2CWJ A;  3RYC B;  4C82 A;  4X1K B;  5C8Y A;  4BT5 A;  3JAS A;  2Q1X A;  2IG8 A;  3KJK A;  2RHH A;  3LWV C;  5FLX M;  1JN1 A;  1W5B A;  4G4Y A;  1X25 A;  2LBT A;  3HKC A;  1TUB A;  2DT4 A;  1Q81 H;  5EO3 A;  3JAM M;  3S06 A;  1KD1 H;  1DBF A;  2CHT A;  1W5A A;  5CA1 B;  1RQ2 A;  3JVH A;  3M84 A;  4HNA A;  5JCO A;  3RYH B;  3ZP7 A;  2NMU A;  5CB4 B;  3F0D A;  3UT5 B;  1E7K A;  3PAF A;  3MDO A;  4C8E A;  5B8F A;  1Q7Y H;  5G4V C;  4B62 A;  5GIO C;  5HY1 A;  3VOB A;  3RYF A;  3JAL A;  4TZZ A;  2OTL F;  2GVI A;  5IJ9 B;  3WJP A;  1W2B F;  4BW0 B;  3C8L A;  3FD6 A;  4X1Y B;  4ZK7 A;  4TUY A;  2Q1Y A;  2LBX A;  5IYZ A;  2HRU A;  1VQL F;  3RE3 A;  4IHJ B;  1VQ4 F;  3I55 F;  3CYQ A;  1T0K B;  4O2A B;  3I56 F;  1XV2 A;  3S03 A;  1VH8 A;  2HP3 A;  3S0H A;  2IQQ A;  4X3L A;  3RA5 A;  1W41 A;  3FBA A;  1GZ0 A;  3WXM B;  4EI8 A;  3NVI B;  2H6L A;  1KC8 H;  5CA0 A;  2UYN B;  3LWO C;  2UYJ A;  3IKF A;  1GX1 A;  1QVF F;  4X3M A;  4BT7 A;  3P0Z A;  1VQ6 F;  5FJ4 C;  3LYB A;  3IEQ A;  2V9Y A;  2QTP A;  5HWE A;  3TD4 A;  3U0O A;  5LA6 A;  1YI2 F;  5HY2 A;  1JY8 A;  3CCJ F;  1H47 A;  3QTY A;  5A2Q M;  2CHS A;  3MCA B;  4C8G A;  1M90 H;  5HY0 A;  3JAK A;  4ZOL B;  2RB9 A;  1CLI A;  4ZHQ A;  5EZY B;  3HKD B;  1W40 A;  4O2B B;  2VGN A;  3K12 A;  3FD5 A;  2BTO A;  4X1K A;  3LWP C;  2YXZ A;  3WGK A;  3HKE B;  1QD9 A;  2RHJ A;  2W8B C;  5LP6 A;  3AGK A;  4O4J B;  1YJN F;  2HS3 A;  3CB2 A;  2HRY A;  2ALE A;  5JQG B;  3DC2 A;  3RYH A;  4F6R B;  1W55 A;  4O4I B;  3HAX D;  3MBM A;  5CB4 A;  3UT5 A;  5LOV B;  2KG4 A;  1IV3 A;  2MQE A;  4M8I A;  3VOA A;  1GO1 A;  2DYY A;  3VYS C;  2KTV A;  4U3J B;  1M1K H;  3JAR B;  4BT4 A;  3V7Q A;  1VHA A;  3SIV A;  1IV1 A;  5IJ9 A;  2BTU A;  2GZL A;  4PWT A;  5EAZ A;  3VYU C;  3ZO8 A;  2F9Z C;  3ZP4 A;  2FGY A;  1T0A A;  3J7A R;  4ZI7 B;  4B46 A;  5GAN K;  2IAF A;  2R75 1;  2LBW A;  3WGN A;  4IHJ A;  3WGL A;  4I50 B;  2ZVZ A;  3NK6 A;  3S0Y A;  1YHQ F;  2QI2 A;  1TVK B;  3N2K B;  3LWQ C;  1VQN F;  1X7O A;  2Z1F A;  4BVR A;  3K14 A;  3P4E A;  1Z5W A;  3MCQ A;  2PHN A;  2JNB A;  3S0W A;  1VQK F;  1K73 H;  4WBN B;  4G4V A;  3CCM F;  3O85 A;  4NQ3 A;  2UYN A;  2L26 A;  3D00 A;  1QVG F;  1YGY A;  1SZQ A;  2RHL A;  2H8C A;  1W3E X;  4DXD A;  3CXC F;  2HVY D;  4G88 A;  3F0E A;  3VMF B;  4IIJ B;  3HKB B;  3CCV F;  3B6N A;  2G9I A;  1JFF B;  5MN6 A;  3OBY A;  2AIF A;  1VQO F;  2RHO A;  3N4Y A;  1RLG A;  2AIZ P;  1Q8R A;  4ZHW A;  3GHZ A;  4LCK A;  5EZY A;  3HKD A;  3G71 F;  2N48 A;  3L7Q A;  2CVL A;  4O2B A;  3SIU A;  4RHA A;  3RA6 A;  4BT2 A;  3G4S F;  4O4H A;  1CN7 A;  2YYE A;  2EWC A;  2H8E A;  3HKE A;  3ZOP A;  3D01 A;  4G4W A;  5KMG A;  1VQ8 F;  4O4J A;  3CC7 F;  3E1Y A;  1NMU B;  1SA0 B;  4X20 B;  3R0P A;  3J81 M;  1XRG A;  3RYI B;  5HY4 A;  2VXY A;  4EB6 B;  1FNK A;  5J2U A;  1U43 A;  4F6R A;  1VQ9 F;  4O4I A;  1YIJ F;  5KX5 B;  5LOV A;  1YJ9 F;  5GAP K;  3VO8 A;  2ZVY A;  1PF5 A;  4LNU B;  4BVT A;  3N2G A;  2KGW A;  3QUW A;  3GTZ A;  3JAR A;  1UFY A;  2KTU A;  4YJ2 B;  3V4D A;  1VQV A;  1N8R H;  5EIB D;  3CMA F;  3HJW C;  2OHW A;  3VI6 A;  5HXZ A;  3WGM A;  4DRX A;  5C8Y B;  3NVK E;  3C9R A;  3CCR F;  2HS4 A;  3CC4 F;  4I50 A;  3J80 M;  3HKC B;  3E20 B;  4TV9 B;  4O4L B;  4YJ3 A;  1Q82 H;  2VAM A;  3N2K A;  2BTQ B;  1VK3 A;  5HP8 A;  5HP7 A;  3CD6 F;  3TD3 A;  3RYC A;  3HTN A;  3FFM A;  4X1I B;  2WAL A;  5JCO C;  4WBN A;  4BT3 A;  2HQS C;  5DCV A;  1COM A;  3IEW A;  1RA4 A;  5JVD B;  1JD1 A;  5GON B;  2Z1U A;  3RYF B;  4ZHV A;  5CA1 A;  2BO1 A;  1Q86 H;  1Z5V A;  1K8A H;  3HWU A;  5ITZ B;  1VQP F;  4EI9 A;  4IIJ A;  4FFB B;  3S02 A;  3EOR A;  2I6R A;  2K1S A;  3BYQ A;  2UZH A;  3E22 B;  1FNJ A;  1U3L A;  2FC3 A;  4X1Y A;  5IJ0 B;  2ZOV A;  3CPQ A;  4G4X A;  1XBI A;  1SA0 A;  4X20 A;  4O2A A;  1S72 F;  3WGJ A;  3RYI A;  3KJJ A;  5CA0 B;  5FNV B;  1X52 A;  5EYP B;  3JCM M;  4C81 A;  4BVS A;  2P6Y A;  3QHD A;  3D54 A;  2B33 A; 
#chains in the Genus database with same CATH homology
 2IAF A;  3DC2 A;  2IQQ A;  4RQO A;  3DDN A;  1YGY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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