1SZQA

Crystal structure of 2-methylcitrate dehydratase
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
473
structure length
473
Chain Sequence
EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of 2-methylcitrate dehydratase
rcsb
source organism Escherichia coli
molecule tags Structural genomics, lyase
molecule keywords 2-methylcitrate dehydratase
total genus 167
structure length 473
sequence length 473
chains with identical sequence B
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03972 MmgE_PrpD MmgE/PrpD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4100.10 Mainly Alpha Orthogonal Bundle 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD 1szqA01
3.30.1330.120 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 2-methylcitrate dehydratase PrpD 1szqA02
2HP3A 2HP0B 1SZQA 2HP0A
chains in the Genus database with same CATH superfamily
3E20B 5GONB 4B62A 1VQMF 5GIOC 3CYQA 1W59A 3CMEF 2CHTA 2Q1YA 2YXZA 3UT5B 3G4SF 1YJWF 4WBNB 1VQNF 4O2AB 2WALA 5LP6B 3OW2F 3MQWA 4C8EA 3CYPB 5IYZA 2H8CA 3G6EF 2G9IA 3C9TA 3RA5A 2DYYA 2HS0A 3WPWA 3MCQA 4B46A 4YJ3A 1VH8A 1GO0A 1SA0B 5EB0A 2HP3A 1H7MA 3S0YA 1VQKF 2OTJF 1W57A 2CW4A 1KQSF 2VGMA 3VCZA 2BTQB 3CC2F 3ON1A 1JJ2F 2KTUA 5JH7A 3IEQA 4O2AA 3CPQA 1VQ9F 3S0HA 1FFXA 4NUTA 1YQNA 2BO1A 3E22A 3FPIA 1FNKA 2EWCA 5GAPK 1FSZA 3DDNA 4I4TB 3R0PA 1CK2A 4I4TA 4G4VA 5HY0A 3Q8HA 4X3LA 3CPWF 2ZAUA 5JVDA 3L7QA 5JVDB 3KJKA 3HKDB 2RHHA 5HP8A 1Q7YH 2LBWA 1FFXB 1VQ8F 3I3FA 2K1SA 3N4ZA 2UYNA 3ZP7A 3KIZA 3I56F 3JALB 3IEWA 1Q8RA 2OTMA 3AGKA 3RYIA 1U43A 4ZHYB 2PMPA 2VAMA 1IPAA 5EO3A 4BVQA 2BTUA 3F0FA 2B33A 3VOBA 3NVIB 1SA0A 4IHJB 4TV9A 2HS3A 3VMFB 1KNKA 4HNAB 1ODEA 2KG4A 3WXMB 3MBMA 4I50B 1TUBB 4KWEA 1TVKA 1M90H 4X1KB 3HKEA 1JY8A 3CXCF 4TUYB 3RYIB 5EZYA 1J7HA 3WJPA 2H6LA 5KX5A 2H8EA 5HWEA 5EB1B 5CA1A 4IIJB 3S06A 4LCKA 1YI2F 2F9ZC 2UYKA 5G4UC 2P6YA 3OONA 4O4LB 4HNAA 5GANK 1T0AA 4I55B 4O4IB 3WGKA 5KMGB 4X1KA 1RLUA 5J2TB 2OHWA 1RQ2A 1W41A 3TD3A 3LWVC 1M1KH 4FFBB 1NJIH 3BYQA 2RHLA 3CC4F 3OBWA 1VQLF 3CCQF 1JN1A 3ELCA 2L26A 3RA6A 3KHNA 1IV3A 3RE3A 3C8LA 5G4VC 4BT5A 4BT7A 1CLIA 3K0TA 4O4LA 5EYPA 3V4DA 3VYSC 3UT5A 5EAZA 3GYQA 4E6EA 1UFYA 2VAPA 2FC3A 4TZZA 2YYEA 3K2XA 4ZHQB 3CCJF 3JVHA 1GX1A 2R6R1 1XHOA 3KE1A 2V9YA 2I6DA 3VYTC 1JD1A 1X52A 5LXTB 1W5AA 4X20A 3JARB 3C9SA 2CZWA 5B8FA 1W5BA 3J80M 1GO1A 4X1IB 1VHAA 5EZYB 3K12A 5CB4A 3RYHA 5CB4B 4TV8A 1K73H 4R40B 3HTNA 1JFFA 1CN7A 3CCSF 5HXUA 4I50A 3JCMM 3HKCB 1RA4A 3D54A 2IG8A 3HWUA 5HP7A 1S72F 2GLZA 2R751 5JH7B 3VOAA 4XCQA 4C8IA 5MN4A 3NK6A 3CB2A 3RYCB 3PLAC 3OBYA 3JAKA 4G4WA 4DRXB 1N8RH 2ZODA 1X7OA 5CA0A 3VYUC 2DT4A 4NWOB 5CA0B 5JCOC 3ZO8A 1DBFA 3VIUA 1W5EA 3N2GA 1ZWZA 4BT2A 3CCRF 2UYNB 4O4HA 4X1IA 5KMGA 2CSLA 3B6NA 4EI8A 3ERNA 1RLGA 1KC8H 2Z1EA 5CA1B 3IKFA 3PAFA 2HP0B 3FD5A 4PWTA 3V3TA 1YGYA 3RYHB 4F6RA 4C81A 3LWRC 4BY9D 3CMAF 3WPXA 3WJQA 1NQ3A 3QUWA 2HQSC 3LYBA 3CCLF 3N2KA 3C9UA 3CG6A 3T80A 3HKEB 3FD6A 1PXWA 1NMUB 3F6MA 3G71F 1Q86H 5JQGA 3S02A 3MDOA 4IHJA 2HRUA 3LFOA 1Z5WA 2ALEA 3N2GB 4C4WC 1RQ7A 5C8YA 5IJ0B 4O2BB 3GHZA 5LYJB 3JASA 4BT6A 4BT4A 1IV1A 3QHDA 5EYPB 3WGJA 3CD6F 1X7PA 2Z1FA 2NMUA 4G88A 3HAXD 3LWQC 3RYCA 4TV8B 3K14A 2HP0A 4F6RB 1KNJA 5JQGB 3P0ZA 4FFBA 3V7EA 4YJ2B 3I7TA 3EORA 1UI9A 1JFFB 1X25A 3N2KB 3JARA 3D01A 4G4XA 1COMA 5GONA 2VXYA 4DXDA 1VQ5F 4ZK7A 2JNBA 4ZOLB 5LA6B 1W3EX 3RYFB 2UYPA 3WJRA 1U3LA 2KTVA 4BVRA 5MN6A 1VQ4F 3S03A 4X1YB 4ZHVA 3E22B 4ZI7A 1YIJF 2Z1UA 4TV9B 4O4HB 2GVIA 2N48A 5ITZA 5J2UA 5LP6C 1VQPF 1W581 4ZHWA 5LOVB 4TUYA 3JASB 3HKBA 1H48A 5FLXM 3FBAA 2RB9A 2ZVYA 5MN5A 3LMEA 1ONIA 5A2QM 4YJ3B 1VQ7F 1QAHA 1XV2A 2IQQA 2UZHA 3JAWA 3VI6A 2ZF8A 1H47A 3JAWB 3DC2A 2RHJA 3N4YA 4IIJA 3F0DA 4C8GA 4X3MA 3WGMA 1W55A 1SZQA 4G4ZA 4ZOLA 5LA6A 2GZLA 4BVSA 4ZI7B 3O85A 4ZHQA 2CVLA 3HKDA 1FNJA 2AMTA 3SIVA 2CHSA 2FGYA 5LXTA 1TUBA 2LCAA 4X20B 4RQOA 1VQVA 3JATA 5GIPC 3WGNA 3IMPA 3VO8A 4G4YA 5EIBD 5BMVB 4EI7A 3CCMF 2VAWA 2KGWA 5AVMA 1QU9A 4B45A 5HY1A 5HXZA 5HY2A 5LOVA 2OZBA 3ZOPA 3IR9A 4O4JB 3JAKB 4C82A 4EB6B 1K8AH 3QTYA 4ERHA 3IKEA 5IJ0A 1KD1H 4YJ2A 3ZP4A 3JAMM 2W8BC 1K9MH 1YITF 5IJ9A 1W42A 4LNUA 3M84A 1Z5VA 1XBIA 4B5CA 2Q1XA 1PF5A 1E7KA 1W40A 3P4EA 2UYJA 1T0KB 5IYZB 3HKBB 5IT9M 2I6RA 5GINC 5J2TA 4WBNA 1OAPA 4U3JA 1W5FA 2ZOVA 2HX0A 3M1XA 4M8IA 1YJNF 2AIZP 5FNVA 4X1YA 3LWOC 3F0GA 3JATB 2ZVZA 3V7QA 3KJJA 1DT9A 1IV2A 5FJ4C 1XRGA 1TVKB 3MCAB 3U0OA 5EIBC 3NK7A 4U39A 1OFUA 3CCVF 5EWRA 1IV4A 3CCEF 4RHAA 1VQOF 5KX5B 3LWPC 4EI9A 3FFMA 1R1MA 3NVKE 3TD5A 4U3JB 2LBXA 1YHQF 3CC7F 1W2BF 1Q81H 4BW0B 4DRXA 4NQ3A 3TD4A 3NMUC 3S0WA 3M4SA 3CCUF 3J81M 2BTOA 2QEXF 2VGNA 5C8YB 2AIFA 3JALA 4BT3A 3ESJA 2PHNA 5IJ9B 2QTPA 3F0EA 4LNUB 1QVFF 2LBTA 1SDSA 2CWJA 1Q82H 2QA4F 4O4JA 4EB6A 3I55F 3HJWC 3E1YA 3HKCA 4O2BA 5LYJA 1QVGF 1U3PA 1VQ6F 2QI2A 5BMVA 5J2UB 5ITZB 4BVTA 1VK3A 5DCVA 5LP6A 4I55A 4O4IA 2IAFA 2HVYD 2OTLF 2MQEA 3P10A 1YJ9F 3J7AR 2HRYA 1U40A 1QD9A 5HY4A 5JCOA 3GTZA 2HS4A 2Z1TA 3RYFA 1GZ0A 3WGLA 3D00A 3VTIC 2RHOA 3SIUA 2Z01A 3LDTA 3C9RA 5FNVB
chains in the Genus database with same CATH topology
2HP3A 2HP0B 1SZQA 2HP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HP3 A;  2HP0 B;  1SZQ A;  2HP0 A; 
#chains in the Genus database with same CATH topology
 3E20 B;  5GON B;  4B62 A;  1VQM F;  5GIO C;  3CYQ A;  1W59 A;  3CME F;  2CHT A;  2Q1Y A;  2YXZ A;  3UT5 B;  3G4S F;  1YJW F;  4WBN B;  1VQN F;  4O2A B;  2WAL A;  5LP6 B;  3OW2 F;  3MQW A;  4C8E A;  3CYP B;  5IYZ A;  2H8C A;  3G6E F;  2G9I A;  3C9T A;  3RA5 A;  2DYY A;  2HS0 A;  3WPW A;  3MCQ A;  4B46 A;  4YJ3 A;  1VH8 A;  1GO0 A;  1SA0 B;  5EB0 A;  2HP3 A;  1H7M A;  3S0Y A;  1VQK F;  2OTJ F;  1W57 A;  2CW4 A;  1KQS F;  2VGM A;  3VCZ A;  2BTQ B;  3CC2 F;  3ON1 A;  1JJ2 F;  2KTU A;  5JH7 A;  3IEQ A;  4O2A A;  3CPQ A;  1VQ9 F;  3S0H A;  1FFX A;  4NUT A;  1YQN A;  2BO1 A;  3E22 A;  3FPI A;  1FNK A;  2EWC A;  5GAP K;  1FSZ A;  3DDN A;  4I4T B;  3R0P A;  1CK2 A;  4I4T A;  4G4V A;  5HY0 A;  3Q8H A;  4X3L A;  3CPW F;  2ZAU A;  5JVD A;  3L7Q A;  5JVD B;  3KJK A;  3HKD B;  2RHH A;  5HP8 A;  1Q7Y H;  2LBW A;  1FFX B;  1VQ8 F;  3I3F A;  2K1S A;  3N4Z A;  2UYN A;  3ZP7 A;  3KIZ A;  3I56 F;  3JAL B;  3IEW A;  1Q8R A;  2OTM A;  3AGK A;  3RYI A;  1U43 A;  4ZHY B;  2PMP A;  2VAM A;  1IPA A;  5EO3 A;  4BVQ A;  2BTU A;  3F0F A;  2B33 A;  3VOB A;  3NVI B;  1SA0 A;  4IHJ B;  4TV9 A;  2HS3 A;  3VMF B;  1KNK A;  4HNA B;  1ODE A;  2KG4 A;  3WXM B;  3MBM A;  4I50 B;  1TUB B;  4KWE A;  1TVK A;  1M90 H;  4X1K B;  3HKE A;  1JY8 A;  3CXC F;  4TUY B;  3RYI B;  5EZY A;  1J7H A;  3WJP A;  2H6L A;  5KX5 A;  2H8E A;  5HWE A;  5EB1 B;  5CA1 A;  4IIJ B;  3S06 A;  4LCK A;  1YI2 F;  2F9Z C;  2UYK A;  5G4U C;  2P6Y A;  3OON A;  4O4L B;  4HNA A;  5GAN K;  1T0A A;  4I55 B;  4O4I B;  3WGK A;  5KMG B;  4X1K A;  1RLU A;  5J2T B;  2OHW A;  1RQ2 A;  1W41 A;  3TD3 A;  3LWV C;  1M1K H;  4FFB B;  1NJI H;  3BYQ A;  2RHL A;  3CC4 F;  3OBW A;  1VQL F;  3CCQ F;  1JN1 A;  3ELC A;  2L26 A;  3RA6 A;  3KHN A;  1IV3 A;  3RE3 A;  3C8L A;  5G4V C;  4BT5 A;  4BT7 A;  1CLI A;  3K0T A;  4O4L A;  5EYP A;  3V4D A;  3VYS C;  3UT5 A;  5EAZ A;  3GYQ A;  4E6E A;  1UFY A;  2VAP A;  2FC3 A;  4TZZ A;  2YYE A;  3K2X A;  4ZHQ B;  3CCJ F;  3JVH A;  1GX1 A;  2R6R 1;  1XHO A;  3KE1 A;  2V9Y A;  2I6D A;  3VYT C;  1JD1 A;  1X52 A;  5LXT B;  1W5A A;  4X20 A;  3JAR B;  3C9S A;  2CZW A;  5B8F A;  1W5B A;  3J80 M;  1GO1 A;  4X1I B;  1VHA A;  5EZY B;  3K12 A;  5CB4 A;  3RYH A;  5CB4 B;  4TV8 A;  1K73 H;  4R40 B;  3HTN A;  1JFF A;  1CN7 A;  3CCS F;  5HXU A;  4I50 A;  3JCM M;  3HKC B;  1RA4 A;  3D54 A;  2IG8 A;  3HWU A;  5HP7 A;  1S72 F;  2GLZ A;  2R75 1;  5JH7 B;  3VOA A;  4XCQ A;  4C8I A;  5MN4 A;  3NK6 A;  3CB2 A;  3RYC B;  3PLA C;  3OBY A;  3JAK A;  4G4W A;  4DRX B;  1N8R H;  2ZOD A;  1X7O A;  5CA0 A;  3VYU C;  2DT4 A;  4NWO B;  5CA0 B;  5JCO C;  3ZO8 A;  1DBF A;  3VIU A;  1W5E A;  3N2G A;  1ZWZ A;  4BT2 A;  3CCR F;  2UYN B;  4O4H A;  4X1I A;  5KMG A;  2CSL A;  3B6N A;  4EI8 A;  3ERN A;  1RLG A;  1KC8 H;  2Z1E A;  5CA1 B;  3IKF A;  3PAF A;  2HP0 B;  3FD5 A;  4PWT A;  3V3T A;  1YGY A;  3RYH B;  4F6R A;  4C81 A;  3LWR C;  4BY9 D;  3CMA F;  3WPX A;  3WJQ A;  1NQ3 A;  3QUW A;  2HQS C;  3LYB A;  3CCL F;  3N2K A;  3C9U A;  3CG6 A;  3T80 A;  3HKE B;  3FD6 A;  1PXW A;  1NMU B;  3F6M A;  3G71 F;  1Q86 H;  5JQG A;  3S02 A;  3MDO A;  4IHJ A;  2HRU A;  3LFO A;  1Z5W A;  2ALE A;  3N2G B;  4C4W C;  1RQ7 A;  5C8Y A;  5IJ0 B;  4O2B B;  3GHZ A;  5LYJ B;  3JAS A;  4BT6 A;  4BT4 A;  1IV1 A;  3QHD A;  5EYP B;  3WGJ A;  3CD6 F;  1X7P A;  2Z1F A;  2NMU A;  4G88 A;  3HAX D;  3LWQ C;  3RYC A;  4TV8 B;  3K14 A;  2HP0 A;  4F6R B;  1KNJ A;  5JQG B;  3P0Z A;  4FFB A;  3V7E A;  4YJ2 B;  3I7T A;  3EOR A;  1UI9 A;  1JFF B;  1X25 A;  3N2K B;  3JAR A;  3D01 A;  4G4X A;  1COM A;  5GON A;  2VXY A;  4DXD A;  1VQ5 F;  4ZK7 A;  2JNB A;  4ZOL B;  5LA6 B;  1W3E X;  3RYF B;  2UYP A;  3WJR A;  1U3L A;  2KTV A;  4BVR A;  5MN6 A;  1VQ4 F;  3S03 A;  4X1Y B;  4ZHV A;  3E22 B;  4ZI7 A;  1YIJ F;  2Z1U A;  4TV9 B;  4O4H B;  2GVI A;  2N48 A;  5ITZ A;  5J2U A;  5LP6 C;  1VQP F;  1W58 1;  4ZHW A;  5LOV B;  4TUY A;  3JAS B;  3HKB A;  1H48 A;  5FLX M;  3FBA A;  2RB9 A;  2ZVY A;  5MN5 A;  3LME A;  1ONI A;  5A2Q M;  4YJ3 B;  1VQ7 F;  1QAH A;  1XV2 A;  2IQQ A;  2UZH A;  3JAW A;  3VI6 A;  2ZF8 A;  1H47 A;  3JAW B;  3DC2 A;  2RHJ A;  3N4Y A;  4IIJ A;  3F0D A;  4C8G A;  4X3M A;  3WGM A;  1W55 A;  1SZQ A;  4G4Z A;  4ZOL A;  5LA6 A;  2GZL A;  4BVS A;  4ZI7 B;  3O85 A;  4ZHQ A;  2CVL A;  3HKD A;  1FNJ A;  2AMT A;  3SIV A;  2CHS A;  2FGY A;  5LXT A;  1TUB A;  2LCA A;  4X20 B;  4RQO A;  1VQV A;  3JAT A;  5GIP C;  3WGN A;  3IMP A;  3VO8 A;  4G4Y A;  5EIB D;  5BMV B;  4EI7 A;  3CCM F;  2VAW A;  2KGW A;  5AVM A;  1QU9 A;  4B45 A;  5HY1 A;  5HXZ A;  5HY2 A;  5LOV A;  2OZB A;  3ZOP A;  3IR9 A;  4O4J B;  3JAK B;  4C82 A;  4EB6 B;  1K8A H;  3QTY A;  4ERH A;  3IKE A;  5IJ0 A;  1KD1 H;  4YJ2 A;  3ZP4 A;  3JAM M;  2W8B C;  1K9M H;  1YIT F;  5IJ9 A;  1W42 A;  4LNU A;  3M84 A;  1Z5V A;  1XBI A;  4B5C A;  2Q1X A;  1PF5 A;  1E7K A;  1W40 A;  3P4E A;  2UYJ A;  1T0K B;  5IYZ B;  3HKB B;  5IT9 M;  2I6R A;  5GIN C;  5J2T A;  4WBN A;  1OAP A;  4U3J A;  1W5F A;  2ZOV A;  2HX0 A;  3M1X A;  4M8I A;  1YJN F;  2AIZ P;  5FNV A;  4X1Y A;  3LWO C;  3F0G A;  3JAT B;  2ZVZ A;  3V7Q A;  3KJJ A;  1DT9 A;  1IV2 A;  5FJ4 C;  1XRG A;  1TVK B;  3MCA B;  3U0O A;  5EIB C;  3NK7 A;  4U39 A;  1OFU A;  3CCV F;  5EWR A;  1IV4 A;  3CCE F;  4RHA A;  1VQO F;  5KX5 B;  3LWP C;  4EI9 A;  3FFM A;  1R1M A;  3NVK E;  3TD5 A;  4U3J B;  2LBX A;  1YHQ F;  3CC7 F;  1W2B F;  1Q81 H;  4BW0 B;  4DRX A;  4NQ3 A;  3TD4 A;  3NMU C;  3S0W A;  3M4S A;  3CCU F;  3J81 M;  2BTO A;  2QEX F;  2VGN A;  5C8Y B;  2AIF A;  3JAL A;  4BT3 A;  3ESJ A;  2PHN A;  5IJ9 B;  2QTP A;  3F0E A;  4LNU B;  1QVF F;  2LBT A;  1SDS A;  2CWJ A;  1Q82 H;  2QA4 F;  4O4J A;  4EB6 A;  3I55 F;  3HJW C;  3E1Y A;  3HKC A;  4O2B A;  5LYJ A;  1QVG F;  1U3P A;  1VQ6 F;  2QI2 A;  5BMV A;  5J2U B;  5ITZ B;  4BVT A;  1VK3 A;  5DCV A;  5LP6 A;  4I55 A;  4O4I A;  2IAF A;  2HVY D;  2OTL F;  2MQE A;  3P10 A;  1YJ9 F;  3J7A R;  2HRY A;  1U40 A;  1QD9 A;  5HY4 A;  5JCO A;  3GTZ A;  2HS4 A;  2Z1T A;  3RYF A;  1GZ0 A;  3WGL A;  3D00 A;  3VTI C;  2RHO A;  3SIU A;  2Z01 A;  3LDT A;  3C9R A;  5FNV B; 
#chains in the Genus database with same CATH homology
 2HP3 A;  2HP0 B;  1SZQ A;  2HP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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