1SZQA

Crystal structure of 2-methylcitrate dehydratase
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
473
structure length
473
Chain Sequence
b'EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-methylcitrate dehydratase
publication title Crystal structure of 2-methylcitrate dehydratase
rcsb
source organism Escherichia coli
molecule tags Structural genomics, lyase
total genus 167
structure length 473
sequence length 473
chains with identical sequence B
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03972 MmgE_PrpD MmgE/PrpD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4100.10 Mainly Alpha Orthogonal Bundle 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD 1szqA01
3.30.1330.120 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 2-methylcitrate dehydratase PrpD 1szqA02
1SZQA 2HP0B 2HP0A 2HP3A
chains in the Genus database with same CATH superfamily
2EWCA 2KGWA 1PXWA 3WGKA 4PWTA 5J2TA 1TVKA 5CA1B 3VYUC 4C81A 5C8YA 1FFXB 1KC8H 5IYZA 1U43A 2CW4A 2GVIA 3KIZA 5EZYB 1TVKB 4KWEA 2L26A 5EIBD 5LP6C 4BVSA 5C8YB 4ZI7A 1XV2A 1R1MA 3JARB 2VGNA 3VO8A 1VQ9F 1QAHA 5KMGA 5MN4A 1Q7YH 5IYZB 5G4UC 1GO1A 3S0WA 3WJRA 1GX1A 2NMUA 4B5CA 3M1XA 3CPWF 5EIBC 4U39A 2UYNB 2IQQA 5GIPC 3HKDA 1YITF 5BMVA 1VQ4F 3HKBB 2AMTA 4X20A 2DYYA 2H8CA 3RYCA 4ERHA 3JALA 1IV3A 1JFFA 3ERNA 1VQNF 2Z1TA 3MBMA 3TD3A 1ODEA 3HKEA 3ZOPA 3ZP4A 1X7PA 3HKDB 3N4ZA 2WALA 1X7OA 5FNVA 2YXZA 4RHAA 3RYCB 4BT6A 4BT5A 3JALB 2VAPA 3E22B 3ON1A 3OBYA 5ITZA 1T0KB 2QI2A 1TUBA 3LWQC 3RE3A 4DRXA 3JVHA 2GZLA 1YHQF 1CN7A 5JQGA 3S06A 5LP6A 2RHJA 1QVFF 4NUTA 3NMUC 1ZWZA 3QUWA 1U40A 3JATA 4FFBA 1SZQA 2UYKA 4C8GA 3CCUF 3C9RA 3VOAA 1M1KH 1S72F 4BVRA 1TUBB 1RQ2A 2Z1UA 4DRXB 3VTIC 3S0YA 5JQGB 3IR9A 3J7AR 3JASA 3JAKA 3WJPA 4YJ3B 3PAFA 4G4WA 2N48A 3JATB 4FFBB 1XRGA 3OONA 1VQ6F 5JH7A 1NJIH 1JY8A 2CSLA 1Q81H 3JASB 3JAKB 2ALEA 3WJQA 1IV4A 4O4HB 3CC4F 4I4TA 4BVQA 3RA6A 3F6MA 5HWEA 4ZHYB 5HY4A 1VQ7F 2VAMA 1KNKA 1IV2A 4I55B 2UYPA 5B8FA 2HQSC 1Q82H 2BTUA 2LBWA 4IHJB 4I4TB 3HWUA 3D00A 5LXTA 2BO1A 2I6RA 5KX5A 3F0GA 3ESJA 2CHTA 3CYQA 5GAPK 3TD4A 4ZHVA 1COMA 2P6YA 5J2UA 4ZHWA 5IJ9B 3HAXD 1KD1H 2ZVZA 3HTNA 3FFMA 2FC3A 5MN5A 2H8EA 2PHNA 3DDNA 3ELCA 4G4XA 4BY9D 1YIJF 5HXZA 5KX5B 3P10A 3E1YA 3WGJA 1FFXA 4F6RB 1W42A 2RHOA 2IAFA 3C9SA 4RQOA 4TV8B 5LA6A 3LWPC 5EZYA 3LMEA 1UFYA 3FD6A 3JARA 5EYPA 4I50B 1XBIA 3F0FA 3WGNA 3MCQA 1OAPA 5LA6B 4NQ3A 5FJ4C 4O2BB 3CCMF 2KTVA 2AIFA 3LFOA 5EO3A 1RLGA 2CWJA 2UYNA 4EI8A 5EYPB 5CB4A 4R40B 3R0PA 4X1KB 3J80M 2ZF8A 3HKBA 3V3TA 5EAZA 1VQLF 1W2BF 2DT4A 4O4JB 5EB1B 2R6R1 5AVMA 1YGYA 4G4VA 4BT3A 4O4LB 3F0EA 3J81M 2QEXF 5CB4B 1VQ5F 1Q8RA 3OBWA 3CC7F 5IT9M 4ZHQA 1VQMF 3GYQA 2QTPA 3GHZA 5JCOC 3V7EA 3KHNA 1JD1A 1SA0A 3NK6A 5EB0A 3E22A 1N8RH 4X3MA 3Q8HA 3MCAB 4ZHQB 3C8LA 4U3JB 4ZK7A 2BTQB 1SA0B 1FNKA 3CD6F 3D54A 3O85A 3FBAA 3HKCB 1IPAA 4NWOB 1JJ2F 3JAWA 4YJ3A 3MDOA 2Z1FA 2G9IA 5GONA 3N2GB 5JVDB 1W5FA 3G71F 2PMPA 3VI6A 3S03A 2W8BC 1W3EX 1H7MA 2HS4A 1VHAA 4YJ2B 3LWVC 3JAWB 2HX0A 4O4HA 4TUYB 2HRUA 4BW0B 5GONB 3L7QA 4HNAB 3CG6A 1NMUB 4TZZA 2MQEA 5MN6A 2R751 5JCOA 3LDTA 4I55A 3WPXA 1VQOF 4B45A 3CCEF 2VAWA 4IHJA 4E6EA 4G4YA 4G88A 1W40A 3LWRC 3FPIA 5GINC 1M90H 1W59A 1CK2A 1VH8A 2RHLA 1VK3A 3OW2F 3SIVA 3QHDA 3WGMA 5HXUA 5IJ9A 1K8AH 5HY0A 4EI7A 5HP7A 3WGLA 2ZODA 1VQKF 3K14A 3VCZA 2OTMA 2LCAA 4F6RA 4TV8A 3JAMM 2HP0B 3CCQF 3F0DA 3LWOC 4I50A 1X25A 3KJKA 1H47A 5LOVA 3PLAC 4O2BA 3VYSC 1YJWF 5CA0B 2QA4F 2FGYA 3V7QA 3CXCF 3KJJA 1K73H 1U3PA 4DXDA 4X1IB 5HY2A 4O2AA 1VQ8F 4B46A 4X1KA 5DCVA 2AIZP 1SDSA 1YI2F 3DC2A 5FLXM 5LOVB 5GANK 3CCLF 2UZHA 4O4JA 2ZOVA 1T0AA 3ZP7A 3I55F 2Z1EA 4O4LA 3IEQA 2CZWA 3ZO8A 1ONIA 2K1SA 3V4DA 1RLUA 3NK7A 1XHOA 4O2AB 5LYJB 1KNJA 2HVYD 4BT4A 4O4IB 2OTLF 3IKEA 4TV9A 4XCQA 3N2KB 3CYPB 3K0TA 3RYIA 1X52A 3B6NA 3VIUA 3RYHA 4BT7A 2LBTA 3VYTC 1W581 4C82A 2OTJF 3VOBA 1UI9A 2H6LA 2I6DA 1FNJA 1W5BA 2F9ZC 5J2TB 4TV9B 4EB6A 3S02A 4G4ZA 3RYIB 4BVTA 3EORA 5EWRA 4U3JA 3RYHB 1GZ0A 1YJNF 3SIUA 1Z5VA 2OHWA 3C9TA 3CCSF 4IIJA 3TD5A 3UT5A 3HKCA 1QU9A 2HRYA 4EB6B 4WBNA 3G4SF 4ZI7B 1VQVA 2RB9A 5KMGB 4X1YA 1W41A 2Z01A 3N2GA 3VMFB 5JVDA 1QD9A 3CC2F 4IIJB 3QTYA 3UT5B 4EI9A 2BTOA 4WBNB 4ZOLA 4YJ2A 4C8IA 3CCRF 2JNBA 4TUYA 5BMVB 3CCJF 2CHSA 4X1YB 4HNAA 2Q1YA 2KG4A 3CMAF 4X20B 4M8IA 1RA4A 1RQ7A 1JFFB 4ZOLB 3FD5A 1QVGF 3HKEB 2UYJA 3CB2A 2B33A 2Q1XA 3RYFA 3WPWA 3MQWA 3T80A 3S0HA 5FNVB 2GLZA 3I3FA 1W57A 2KTUA 3K2XA 3M84A 3N4YA 4X3LA 3NVKE 1W5EA 2VXYA 1Q86H 3JCMM 3D01A 1W55A 3RYFB 3GTZA 5ITZB 1NQ3A 4B62A 2IG8A 3U0OA 1DT9A 3WXMB 1YQNA 1U3LA 5LP6B 2HS0A 1YJ9F 3G6EF 2YYEA 2HS3A 1DBFA 2HP0A 1PF5A 3LYBA 1Z5WA 3NVIB 2LBXA 1VQPF 1W5AA 1CLIA 5A2QM 1KQSF 5HP8A 3CPQA 2HP3A 5IJ0A 4LCKA 3IMPA 5JH7B 5CA0A 1OFUA 5G4VC 3P4EA 2V9YA 1E7KA 4X1IA 2ZVYA 4LNUA 1H48A 1JN1A 3RA5A 5HY1A 1FSZA 5IJ0B 3M4SA 3I56F 3CCVF 1J7HA 2RHHA 3IEWA 5GIOC 1IV1A 3E20B 3IKFA 4BT2A 3I7TA 3AGKA 5LYJA 4LNUB 3K12A 3CMEF 2ZAUA 3KE1A 3HJWC 4O4IA 2VGMA 5LXTB 3N2KA 5CA1A 3P0ZA 1GO0A 1K9MH 4C4WC 3C9UA 4C8EA 2CVLA 5J2UB 3BYQA 2OZBA
chains in the Genus database with same CATH topology
1SZQA 2HP0B 2HP0A 2HP3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZQ A;  2HP0 B;  2HP0 A;  2HP3 A; 
#chains in the Genus database with same CATH topology
 2EWC A;  2KGW A;  1PXW A;  3WGK A;  4PWT A;  5J2T A;  1TVK A;  5CA1 B;  3VYU C;  4C81 A;  5C8Y A;  1FFX B;  1KC8 H;  5IYZ A;  1U43 A;  2CW4 A;  2GVI A;  3KIZ A;  5EZY B;  1TVK B;  4KWE A;  2L26 A;  5EIB D;  5LP6 C;  4BVS A;  5C8Y B;  4ZI7 A;  1XV2 A;  1R1M A;  3JAR B;  2VGN A;  3VO8 A;  1VQ9 F;  1QAH A;  5KMG A;  5MN4 A;  1Q7Y H;  5IYZ B;  5G4U C;  1GO1 A;  3S0W A;  3WJR A;  1GX1 A;  2NMU A;  4B5C A;  3M1X A;  3CPW F;  5EIB C;  4U39 A;  2UYN B;  2IQQ A;  5GIP C;  3HKD A;  1YIT F;  5BMV A;  1VQ4 F;  3HKB B;  2AMT A;  4X20 A;  2DYY A;  2H8C A;  3RYC A;  4ERH A;  3JAL A;  1IV3 A;  1JFF A;  3ERN A;  1VQN F;  2Z1T A;  3MBM A;  3TD3 A;  1ODE A;  3HKE A;  3ZOP A;  3ZP4 A;  1X7P A;  3HKD B;  3N4Z A;  2WAL A;  1X7O A;  5FNV A;  2YXZ A;  4RHA A;  3RYC B;  4BT6 A;  4BT5 A;  3JAL B;  2VAP A;  3E22 B;  3ON1 A;  3OBY A;  5ITZ A;  1T0K B;  2QI2 A;  1TUB A;  3LWQ C;  3RE3 A;  4DRX A;  3JVH A;  2GZL A;  1YHQ F;  1CN7 A;  5JQG A;  3S06 A;  5LP6 A;  2RHJ A;  1QVF F;  4NUT A;  3NMU C;  1ZWZ A;  3QUW A;  1U40 A;  3JAT A;  4FFB A;  1SZQ A;  2UYK A;  4C8G A;  3CCU F;  3C9R A;  3VOA A;  1M1K H;  1S72 F;  4BVR A;  1TUB B;  1RQ2 A;  2Z1U A;  4DRX B;  3VTI C;  3S0Y A;  5JQG B;  3IR9 A;  3J7A R;  3JAS A;  3JAK A;  3WJP A;  4YJ3 B;  3PAF A;  4G4W A;  2N48 A;  3JAT B;  4FFB B;  1XRG A;  3OON A;  1VQ6 F;  5JH7 A;  1NJI H;  1JY8 A;  2CSL A;  1Q81 H;  3JAS B;  3JAK B;  2ALE A;  3WJQ A;  1IV4 A;  4O4H B;  3CC4 F;  4I4T A;  4BVQ A;  3RA6 A;  3F6M A;  5HWE A;  4ZHY B;  5HY4 A;  1VQ7 F;  2VAM A;  1KNK A;  1IV2 A;  4I55 B;  2UYP A;  5B8F A;  2HQS C;  1Q82 H;  2BTU A;  2LBW A;  4IHJ B;  4I4T B;  3HWU A;  3D00 A;  5LXT A;  2BO1 A;  2I6R A;  5KX5 A;  3F0G A;  3ESJ A;  2CHT A;  3CYQ A;  5GAP K;  3TD4 A;  4ZHV A;  1COM A;  2P6Y A;  5J2U A;  4ZHW A;  5IJ9 B;  3HAX D;  1KD1 H;  2ZVZ A;  3HTN A;  3FFM A;  2FC3 A;  5MN5 A;  2H8E A;  2PHN A;  3DDN A;  3ELC A;  4G4X A;  4BY9 D;  1YIJ F;  5HXZ A;  5KX5 B;  3P10 A;  3E1Y A;  3WGJ A;  1FFX A;  4F6R B;  1W42 A;  2RHO A;  2IAF A;  3C9S A;  4RQO A;  4TV8 B;  5LA6 A;  3LWP C;  5EZY A;  3LME A;  1UFY A;  3FD6 A;  3JAR A;  5EYP A;  4I50 B;  1XBI A;  3F0F A;  3WGN A;  3MCQ A;  1OAP A;  5LA6 B;  4NQ3 A;  5FJ4 C;  4O2B B;  3CCM F;  2KTV A;  2AIF A;  3LFO A;  5EO3 A;  1RLG A;  2CWJ A;  2UYN A;  4EI8 A;  5EYP B;  5CB4 A;  4R40 B;  3R0P A;  4X1K B;  3J80 M;  2ZF8 A;  3HKB A;  3V3T A;  5EAZ A;  1VQL F;  1W2B F;  2DT4 A;  4O4J B;  5EB1 B;  2R6R 1;  5AVM A;  1YGY A;  4G4V A;  4BT3 A;  4O4L B;  3F0E A;  3J81 M;  2QEX F;  5CB4 B;  1VQ5 F;  1Q8R A;  3OBW A;  3CC7 F;  5IT9 M;  4ZHQ A;  1VQM F;  3GYQ A;  2QTP A;  3GHZ A;  5JCO C;  3V7E A;  3KHN A;  1JD1 A;  1SA0 A;  3NK6 A;  5EB0 A;  3E22 A;  1N8R H;  4X3M A;  3Q8H A;  3MCA B;  4ZHQ B;  3C8L A;  4U3J B;  4ZK7 A;  2BTQ B;  1SA0 B;  1FNK A;  3CD6 F;  3D54 A;  3O85 A;  3FBA A;  3HKC B;  1IPA A;  4NWO B;  1JJ2 F;  3JAW A;  4YJ3 A;  3MDO A;  2Z1F A;  2G9I A;  5GON A;  3N2G B;  5JVD B;  1W5F A;  3G71 F;  2PMP A;  3VI6 A;  3S03 A;  2W8B C;  1W3E X;  1H7M A;  2HS4 A;  1VHA A;  4YJ2 B;  3LWV C;  3JAW B;  2HX0 A;  4O4H A;  4TUY B;  2HRU A;  4BW0 B;  5GON B;  3L7Q A;  4HNA B;  3CG6 A;  1NMU B;  4TZZ A;  2MQE A;  5MN6 A;  2R75 1;  5JCO A;  3LDT A;  4I55 A;  3WPX A;  1VQO F;  4B45 A;  3CCE F;  2VAW A;  4IHJ A;  4E6E A;  4G4Y A;  4G88 A;  1W40 A;  3LWR C;  3FPI A;  5GIN C;  1M90 H;  1W59 A;  1CK2 A;  1VH8 A;  2RHL A;  1VK3 A;  3OW2 F;  3SIV A;  3QHD A;  3WGM A;  5HXU A;  5IJ9 A;  1K8A H;  5HY0 A;  4EI7 A;  5HP7 A;  3WGL A;  2ZOD A;  1VQK F;  3K14 A;  3VCZ A;  2OTM A;  2LCA A;  4F6R A;  4TV8 A;  3JAM M;  2HP0 B;  3CCQ F;  3F0D A;  3LWO C;  4I50 A;  1X25 A;  3KJK A;  1H47 A;  5LOV A;  3PLA C;  4O2B A;  3VYS C;  1YJW F;  5CA0 B;  2QA4 F;  2FGY A;  3V7Q A;  3CXC F;  3KJJ A;  1K73 H;  1U3P A;  4DXD A;  4X1I B;  5HY2 A;  4O2A A;  1VQ8 F;  4B46 A;  4X1K A;  5DCV A;  2AIZ P;  1SDS A;  1YI2 F;  3DC2 A;  5FLX M;  5LOV B;  5GAN K;  3CCL F;  2UZH A;  4O4J A;  2ZOV A;  1T0A A;  3ZP7 A;  3I55 F;  2Z1E A;  4O4L A;  3IEQ A;  2CZW A;  3ZO8 A;  1ONI A;  2K1S A;  3V4D A;  1RLU A;  3NK7 A;  1XHO A;  4O2A B;  5LYJ B;  1KNJ A;  2HVY D;  4BT4 A;  4O4I B;  2OTL F;  3IKE A;  4TV9 A;  4XCQ A;  3N2K B;  3CYP B;  3K0T A;  3RYI A;  1X52 A;  3B6N A;  3VIU A;  3RYH A;  4BT7 A;  2LBT A;  3VYT C;  1W58 1;  4C82 A;  2OTJ F;  3VOB A;  1UI9 A;  2H6L A;  2I6D A;  1FNJ A;  1W5B A;  2F9Z C;  5J2T B;  4TV9 B;  4EB6 A;  3S02 A;  4G4Z A;  3RYI B;  4BVT A;  3EOR A;  5EWR A;  4U3J A;  3RYH B;  1GZ0 A;  1YJN F;  3SIU A;  1Z5V A;  2OHW A;  3C9T A;  3CCS F;  4IIJ A;  3TD5 A;  3UT5 A;  3HKC A;  1QU9 A;  2HRY A;  4EB6 B;  4WBN A;  3G4S F;  4ZI7 B;  1VQV A;  2RB9 A;  5KMG B;  4X1Y A;  1W41 A;  2Z01 A;  3N2G A;  3VMF B;  5JVD A;  1QD9 A;  3CC2 F;  4IIJ B;  3QTY A;  3UT5 B;  4EI9 A;  2BTO A;  4WBN B;  4ZOL A;  4YJ2 A;  4C8I A;  3CCR F;  2JNB A;  4TUY A;  5BMV B;  3CCJ F;  2CHS A;  4X1Y B;  4HNA A;  2Q1Y A;  2KG4 A;  3CMA F;  4X20 B;  4M8I A;  1RA4 A;  1RQ7 A;  1JFF B;  4ZOL B;  3FD5 A;  1QVG F;  3HKE B;  2UYJ A;  3CB2 A;  2B33 A;  2Q1X A;  3RYF A;  3WPW A;  3MQW A;  3T80 A;  3S0H A;  5FNV B;  2GLZ A;  3I3F A;  1W57 A;  2KTU A;  3K2X A;  3M84 A;  3N4Y A;  4X3L A;  3NVK E;  1W5E A;  2VXY A;  1Q86 H;  3JCM M;  3D01 A;  1W55 A;  3RYF B;  3GTZ A;  5ITZ B;  1NQ3 A;  4B62 A;  2IG8 A;  3U0O A;  1DT9 A;  3WXM B;  1YQN A;  1U3L A;  5LP6 B;  2HS0 A;  1YJ9 F;  3G6E F;  2YYE A;  2HS3 A;  1DBF A;  2HP0 A;  1PF5 A;  3LYB A;  1Z5W A;  3NVI B;  2LBX A;  1VQP F;  1W5A A;  1CLI A;  5A2Q M;  1KQS F;  5HP8 A;  3CPQ A;  2HP3 A;  5IJ0 A;  4LCK A;  3IMP A;  5JH7 B;  5CA0 A;  1OFU A;  5G4V C;  3P4E A;  2V9Y A;  1E7K A;  4X1I A;  2ZVY A;  4LNU A;  1H48 A;  1JN1 A;  3RA5 A;  5HY1 A;  1FSZ A;  5IJ0 B;  3M4S A;  3I56 F;  3CCV F;  1J7H A;  2RHH A;  3IEW A;  5GIO C;  1IV1 A;  3E20 B;  3IKF A;  4BT2 A;  3I7T A;  3AGK A;  5LYJ A;  4LNU B;  3K12 A;  3CME F;  2ZAU A;  3KE1 A;  3HJW C;  4O4I A;  2VGM A;  5LXT B;  3N2K A;  5CA1 A;  3P0Z A;  1GO0 A;  1K9M H;  4C4W C;  3C9U A;  4C8E A;  2CVL A;  5J2U B;  3BYQ A;  2OZB A; 
#chains in the Genus database with same CATH homology
 1SZQ A;  2HP0 B;  2HP0 A;  2HP3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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