1SZQA

Crystal structure of 2-methylcitrate dehydratase
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
473
structure length
473
Chain Sequence
EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-methylcitrate dehydratase
publication title Crystal structure of 2-methylcitrate dehydratase
rcsb
source organism Escherichia coli
molecule tags Structural genomics, lyase
total genus 167
structure length 473
sequence length 473
chains with identical sequence B
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03972 MmgE_PrpD MmgE/PrpD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4100.10 Mainly Alpha Orthogonal Bundle 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD 1szqA01
3.30.1330.120 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 2-methylcitrate dehydratase PrpD 1szqA02
2HP3A 1SZQA 2HP0A 2HP0B
chains in the Genus database with same CATH superfamily
1JJ2F 2Z1TA 3KHNA 2JNBA 1U43A 3DC2A 4BVSA 5IYZB 3ESJA 4O2BB 4YJ3B 3KIZA 1W5EA 4X1YB 3NMUC 3CC7F 3HKBB 3N2GB 2CHTA 2ZVYA 5G4UC 1YGYA 3K12A 3CYPB 5LYJB 3JALA 1PF5A 3E1YA 3C9RA 1KD1H 4O2AB 3JVHA 1FFXB 4TUYB 1CLIA 5KX5B 2CZWA 5CA0A 4IIJB 1W57A 3UT5A 3E20B 4C8EA 3IEWA 3WGJA 3R0PA 5IT9M 1VQOF 2N48A 2PMPA 4EI9A 2KG4A 5IYZA 2H8EA 2ALEA 2R751 3CCMF 4O2BA 4YJ3A 3GYQA 2UYNB 4X1YA 4BVQA 2UYKA 3HKBA 5CB4A 5IJ9B 2OHWA 3N2GA 5JCOA 4KWEA 5LYJA 3CCUF 3IKFA 2Z1UA 3TD4A 4O2AA 3MCQA 4G4WA 2RHJA 4C8IA 1FFXA 3N2KB 4TUYA 5KX5A 2GLZA 3QTYA 4RQOA 4FFBB 4TZZA 2OTLF 4IIJA 1W41A 2I6DA 3FD6A 1KC8H 3WXMB 1KNJA 1U3PA 5J2UB 3CCEF 1Q7YH 3CCQF 3CCSF 5HP7A 3FD5A 3KJKA 1QD9A 3WGMA 3O85A 1CN7A 2EWCA 4B45A 1QVGF 2UYNA 3ZP7A 5IJ9A 1JFFB 5MN6A 5GAPK 1M1KH 2CHSA 2HRUA 1VQ4F 3CYQA 4I55B 3N2KA 2Q1XA 3J81M 4FFBA 5CA1B 5EB1B 3NVKE 1X25A 1ZWZA 1YITF 3KJJA 3V4DA 4F6RB 1NJIH 4EI8A 5FJ4C 4ZI7B 5J2UA 2WALA 2H6LA 3ELCA 2FGYA 4O4JB 2HS3A 2PHNA 3JAMM 4X3LA 1E7KA 1YI2F 3LWVC 3C8LA 4NUTA 2IQQA 3CMAF 1JFFA 1GO0A 5FLXM 3NVIB 5HWEA 3CCVF 2HP3A 2HX0A 2QI2A 2UYJA 3NK6A 4I55A 5EAZA 3IMPA 3LMEA 3L7QA 2GZLA 5J2TB 5CA1A 2GVIA 3P4EA 4X1KB 1JN1A 4F6RA 1Z5WA 3LWQC 2CSLA 4BT5A 4X1IB 2UYPA 4ZI7A 2K1SA 1VHAA 3ERNA 4G88A 1UFYA 2Z1FA 4G4VA 4O4JA 4TV8B 3VOBA 3P0ZA 5MN5A 1W5AA 3VTIC 1COMA 1VQ7F 1W581 4WBNB 5CB4B 2W8BC 3K14A 3MBMA 3OW2F 2IAFA 4BY9D 3WPXA 3N4ZA 5J2TA 1DBFA 4X1KA 3PLAC 4ZOLB 3JASB 5LP6C 1TUBB 1FSZA 2QTPA 2L26A 1VH8A 4X1IA 4YJ2B 1NQ3A 1OFUA 1ODEA 4NWOB 4TV8A 5IJ0B 3CD6F 5GIPC 2AIFA 3CC2F 2YXZA 1ONIA 1OAPA 3GHZA 3TD5A 3S0YA 3V3TA 1XBIA 1TVKB 3HKEB 4WBNA 4BT3A 5G4VC 3F0FA 1IPAA 5JH7B 3M4SA 1S72F 3RYFB 3BYQA 2VAPA 3CCRF 5HY2A 3HKDB 2VXYA 3N4YA 5EWRA 1YQNA 1Q81H 3C9TA 5KMGB 3LDTA 3K0TA 3IKEA 4ZOLA 3JASA 1TUBA 2CW4A 2IG8A 3KE1A 1X52A 4YJ2A 3G71F 3HKCA 5HXZA 5JQGB 4R40B 5IJ0A 4G4ZA 3F0EA 4BT6A 1YJWF 3PAFA 1FNJA 2CWJA 3K2XA 3JATB 3JAKB 5EZYB 3HKEA 1TVKA 2P6YA 4O4IB 5JH7A 3RYFA 3SIUA 2LCAA 3V7EA 1XRGA 5EYPA 3HKDA 4G4XA 4TV9B 3C9UA 1VQ6F 1U3LA 4BW0B 2Z1EA 5KMGA 2FC3A 3VYSC 4ZHQB 4NQ3A 1X7OA 1H7MA 3I7TA 1FNKA 3I3FA 5EIBC 1X7PA 3IR9A 2R6R1 3MDOA 3LWPC 4LNUB 5LA6B 5JQGA 2RHHA 1KQSF 3VCZA 5DCVA 2DT4A 4C4WC 3JATA 1VK3A 3JAKA 4HNAB 5EZYA 1YIJF 1Q82H 5C8YB 4O4IA 2B33A 2HRYA 3RYIB 3E22B 4BVTA 3RYCB 2HS4A 4BT7A 3S02A 2HP0A 3S0WA 1NMUB 5JCOC 4TV9A 1W42A 2AMTA 2VGNA 2CVLA 4C81A 2H8CA 1K9MH 3VYUC 3V7QA 3WGKA 5HY0A 3JARB 1VQ9F 4ZHQA 3EORA 3ZO8A 1SA0A 3Q8HA 3RE3A 3G6EF 1GO1A 2MQEA 4LNUA 5HXUA 5LA6A 5BMVB 1W2BF 3FBAA 4BT4A 3B6NA 4ZK7A 5LOVA 2VAWA 2KTUA 3MCAB 3WJPA 1VQKF 2ZVZA 1IV1A 1XHOA 3HTNA 3AGKA 3S06A 4HNAA 3J7AR 1RQ2A 5C8YA 3D01A 4B5CA 3RYIA 3RYCA 3E22A 1W40A 4X20B 4DRXA 5HY1A 2UZHA 3LWOC 2QEXF 1PXWA 4BT2A 1VQNF 4O4LB 1W5BA 1IV4A 4I4TB 3C9SA 3QHDA 4U3JB 2BTOA 3JARA 4C82A 3FFMA 3I56F 3CPWF 1QAHA 3F0GA 4XCQA 1VQMF 3VI6A 3CC4F 3VOAA 5BMVA 3HKCB 1UI9A 1XV2A 5EO3A 3VIUA 5LXTB 1H48A 3CCJF 2HQSC 1QU9A 1VQ8F 1DT9A 1H47A 3J80M 4X20A 1VQ5F 4PWTA 1SDSA 3S03A 1JD1A 4I50B 3D00A 4B46A 3LWRC 1VQVA 4O4LA 1KNKA 2ZF8A 5EYPB 4I4TA 4U3JA 1N8RH 4ZHYB 1Q86H 1W59A 3OBWA 3CG6A 2OTJF 2F9ZC 4U39A 1GX1A 2KTVA 3CXCF 3M1XA 3LFOA 3ON1A 1CK2A 1RLUA 2ZODA 3JCMM 3TD3A 1RQ7A 2ZOVA 1T0AA 3CCLF 3VYTC 3QUWA 5LXTA 4BVRA 3F0DA 4EB6B 2BTQB 3WGNA 1Z5VA 3P10A 1YHQF 3WJRA 2VGMA 4DXDA 3GTZA 1SZQA 4I50A 5GINC 3T80A 1W3EX 3ZOPA 2OTMA 2Q1YA 5LP6B 1VQLF 2HP0B 2HS0A 1K8AH 2I6RA 3MQWA 5EB0A 1M90H 2DYYA 1VQPF 5GANK 3FPIA 2LBWA 3HJWC 3DDNA 5ITZB 3CPQA 5JVDB 4B62A 1U40A 5GIOC 1SA0B 2YYEA 3WPWA 2QA4F 3HAXD 5FNVB 2LBTA 4E6EA 4LCKA 3JAWB 4ZHWA 4EB6A 3RYHB 5LOVB 3RA5A 1K73H 2NMUA 3OBYA 1J7HA 1W5FA 5GONB 2BTUA 4DRXB 2RHLA 1YJNF 4IHJB 3VMFB 5AVMA 2VAMA 5LP6A 1T0KB 1RA4A 3G4SF 4O4HB 2RHOA 2RB9A 2G9IA 4RHAA 5ITZA 1IV2A 5JVDA 3SIVA 1R1MA 4ERHA 1Q8RA 2LBXA 1GZ0A 5EIBD 5FNVA 1JY8A 3D54A 4X3MA 3JAWA 1RLGA 5HY4A 3WJQA 1IV3A 2KGWA 3RYHA 2AIZP 3LYBA 2V9YA 3IEQA 5MN4A 2BO1A 3VO8A 1QVFF 5A2QM 2Z01A 4ZHVA 5GONA 3CMEF 3JALB 3CB2A 3S0HA 2ZAUA 3OONA 3ZP4A 5B8FA 2HVYD 3RA6A 3U0OA 4IHJA 3WGLA 2OZBA 3NK7A 4EI7A 1W55A 1YJ9F 3HWUA 4G4YA 3M84A 4M8IA 3F6MA 3I55F 4O4HA 5CA0B 4C8GA 3UT5B 5HP8A
chains in the Genus database with same CATH topology
2HP3A 1SZQA 2HP0A 2HP0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HP3 A;  1SZQ A;  2HP0 A;  2HP0 B; 
#chains in the Genus database with same CATH topology
 1JJ2 F;  2Z1T A;  3KHN A;  2JNB A;  1U43 A;  3DC2 A;  4BVS A;  5IYZ B;  3ESJ A;  4O2B B;  4YJ3 B;  3KIZ A;  1W5E A;  4X1Y B;  3NMU C;  3CC7 F;  3HKB B;  3N2G B;  2CHT A;  2ZVY A;  5G4U C;  1YGY A;  3K12 A;  3CYP B;  5LYJ B;  3JAL A;  1PF5 A;  3E1Y A;  3C9R A;  1KD1 H;  4O2A B;  3JVH A;  1FFX B;  4TUY B;  1CLI A;  5KX5 B;  2CZW A;  5CA0 A;  4IIJ B;  1W57 A;  3UT5 A;  3E20 B;  4C8E A;  3IEW A;  3WGJ A;  3R0P A;  5IT9 M;  1VQO F;  2N48 A;  2PMP A;  4EI9 A;  2KG4 A;  5IYZ A;  2H8E A;  2ALE A;  2R75 1;  3CCM F;  4O2B A;  4YJ3 A;  3GYQ A;  2UYN B;  4X1Y A;  4BVQ A;  2UYK A;  3HKB A;  5CB4 A;  5IJ9 B;  2OHW A;  3N2G A;  5JCO A;  4KWE A;  5LYJ A;  3CCU F;  3IKF A;  2Z1U A;  3TD4 A;  4O2A A;  3MCQ A;  4G4W A;  2RHJ A;  4C8I A;  1FFX A;  3N2K B;  4TUY A;  5KX5 A;  2GLZ A;  3QTY A;  4RQO A;  4FFB B;  4TZZ A;  2OTL F;  4IIJ A;  1W41 A;  2I6D A;  3FD6 A;  1KC8 H;  3WXM B;  1KNJ A;  1U3P A;  5J2U B;  3CCE F;  1Q7Y H;  3CCQ F;  3CCS F;  5HP7 A;  3FD5 A;  3KJK A;  1QD9 A;  3WGM A;  3O85 A;  1CN7 A;  2EWC A;  4B45 A;  1QVG F;  2UYN A;  3ZP7 A;  5IJ9 A;  1JFF B;  5MN6 A;  5GAP K;  1M1K H;  2CHS A;  2HRU A;  1VQ4 F;  3CYQ A;  4I55 B;  3N2K A;  2Q1X A;  3J81 M;  4FFB A;  5CA1 B;  5EB1 B;  3NVK E;  1X25 A;  1ZWZ A;  1YIT F;  3KJJ A;  3V4D A;  4F6R B;  1NJI H;  4EI8 A;  5FJ4 C;  4ZI7 B;  5J2U A;  2WAL A;  2H6L A;  3ELC A;  2FGY A;  4O4J B;  2HS3 A;  2PHN A;  3JAM M;  4X3L A;  1E7K A;  1YI2 F;  3LWV C;  3C8L A;  4NUT A;  2IQQ A;  3CMA F;  1JFF A;  1GO0 A;  5FLX M;  3NVI B;  5HWE A;  3CCV F;  2HP3 A;  2HX0 A;  2QI2 A;  2UYJ A;  3NK6 A;  4I55 A;  5EAZ A;  3IMP A;  3LME A;  3L7Q A;  2GZL A;  5J2T B;  5CA1 A;  2GVI A;  3P4E A;  4X1K B;  1JN1 A;  4F6R A;  1Z5W A;  3LWQ C;  2CSL A;  4BT5 A;  4X1I B;  2UYP A;  4ZI7 A;  2K1S A;  1VHA A;  3ERN A;  4G88 A;  1UFY A;  2Z1F A;  4G4V A;  4O4J A;  4TV8 B;  3VOB A;  3P0Z A;  5MN5 A;  1W5A A;  3VTI C;  1COM A;  1VQ7 F;  1W58 1;  4WBN B;  5CB4 B;  2W8B C;  3K14 A;  3MBM A;  3OW2 F;  2IAF A;  4BY9 D;  3WPX A;  3N4Z A;  5J2T A;  1DBF A;  4X1K A;  3PLA C;  4ZOL B;  3JAS B;  5LP6 C;  1TUB B;  1FSZ A;  2QTP A;  2L26 A;  1VH8 A;  4X1I A;  4YJ2 B;  1NQ3 A;  1OFU A;  1ODE A;  4NWO B;  4TV8 A;  5IJ0 B;  3CD6 F;  5GIP C;  2AIF A;  3CC2 F;  2YXZ A;  1ONI A;  1OAP A;  3GHZ A;  3TD5 A;  3S0Y A;  3V3T A;  1XBI A;  1TVK B;  3HKE B;  4WBN A;  4BT3 A;  5G4V C;  3F0F A;  1IPA A;  5JH7 B;  3M4S A;  1S72 F;  3RYF B;  3BYQ A;  2VAP A;  3CCR F;  5HY2 A;  3HKD B;  2VXY A;  3N4Y A;  5EWR A;  1YQN A;  1Q81 H;  3C9T A;  5KMG B;  3LDT A;  3K0T A;  3IKE A;  4ZOL A;  3JAS A;  1TUB A;  2CW4 A;  2IG8 A;  3KE1 A;  1X52 A;  4YJ2 A;  3G71 F;  3HKC A;  5HXZ A;  5JQG B;  4R40 B;  5IJ0 A;  4G4Z A;  3F0E A;  4BT6 A;  1YJW F;  3PAF A;  1FNJ A;  2CWJ A;  3K2X A;  3JAT B;  3JAK B;  5EZY B;  3HKE A;  1TVK A;  2P6Y A;  4O4I B;  5JH7 A;  3RYF A;  3SIU A;  2LCA A;  3V7E A;  1XRG A;  5EYP A;  3HKD A;  4G4X A;  4TV9 B;  3C9U A;  1VQ6 F;  1U3L A;  4BW0 B;  2Z1E A;  5KMG A;  2FC3 A;  3VYS C;  4ZHQ B;  4NQ3 A;  1X7O A;  1H7M A;  3I7T A;  1FNK A;  3I3F A;  5EIB C;  1X7P A;  3IR9 A;  2R6R 1;  3MDO A;  3LWP C;  4LNU B;  5LA6 B;  5JQG A;  2RHH A;  1KQS F;  3VCZ A;  5DCV A;  2DT4 A;  4C4W C;  3JAT A;  1VK3 A;  3JAK A;  4HNA B;  5EZY A;  1YIJ F;  1Q82 H;  5C8Y B;  4O4I A;  2B33 A;  2HRY A;  3RYI B;  3E22 B;  4BVT A;  3RYC B;  2HS4 A;  4BT7 A;  3S02 A;  2HP0 A;  3S0W A;  1NMU B;  5JCO C;  4TV9 A;  1W42 A;  2AMT A;  2VGN A;  2CVL A;  4C81 A;  2H8C A;  1K9M H;  3VYU C;  3V7Q A;  3WGK A;  5HY0 A;  3JAR B;  1VQ9 F;  4ZHQ A;  3EOR A;  3ZO8 A;  1SA0 A;  3Q8H A;  3RE3 A;  3G6E F;  1GO1 A;  2MQE A;  4LNU A;  5HXU A;  5LA6 A;  5BMV B;  1W2B F;  3FBA A;  4BT4 A;  3B6N A;  4ZK7 A;  5LOV A;  2VAW A;  2KTU A;  3MCA B;  3WJP A;  1VQK F;  2ZVZ A;  1IV1 A;  1XHO A;  3HTN A;  3AGK A;  3S06 A;  4HNA A;  3J7A R;  1RQ2 A;  5C8Y A;  3D01 A;  4B5C A;  3RYI A;  3RYC A;  3E22 A;  1W40 A;  4X20 B;  4DRX A;  5HY1 A;  2UZH A;  3LWO C;  2QEX F;  1PXW A;  4BT2 A;  1VQN F;  4O4L B;  1W5B A;  1IV4 A;  4I4T B;  3C9S A;  3QHD A;  4U3J B;  2BTO A;  3JAR A;  4C82 A;  3FFM A;  3I56 F;  3CPW F;  1QAH A;  3F0G A;  4XCQ A;  1VQM F;  3VI6 A;  3CC4 F;  3VOA A;  5BMV A;  3HKC B;  1UI9 A;  1XV2 A;  5EO3 A;  3VIU A;  5LXT B;  1H48 A;  3CCJ F;  2HQS C;  1QU9 A;  1VQ8 F;  1DT9 A;  1H47 A;  3J80 M;  4X20 A;  1VQ5 F;  4PWT A;  1SDS A;  3S03 A;  1JD1 A;  4I50 B;  3D00 A;  4B46 A;  3LWR C;  1VQV A;  4O4L A;  1KNK A;  2ZF8 A;  5EYP B;  4I4T A;  4U3J A;  1N8R H;  4ZHY B;  1Q86 H;  1W59 A;  3OBW A;  3CG6 A;  2OTJ F;  2F9Z C;  4U39 A;  1GX1 A;  2KTV A;  3CXC F;  3M1X A;  3LFO A;  3ON1 A;  1CK2 A;  1RLU A;  2ZOD A;  3JCM M;  3TD3 A;  1RQ7 A;  2ZOV A;  1T0A A;  3CCL F;  3VYT C;  3QUW A;  5LXT A;  4BVR A;  3F0D A;  4EB6 B;  2BTQ B;  3WGN A;  1Z5V A;  3P10 A;  1YHQ F;  3WJR A;  2VGM A;  4DXD A;  3GTZ A;  1SZQ A;  4I50 A;  5GIN C;  3T80 A;  1W3E X;  3ZOP A;  2OTM A;  2Q1Y A;  5LP6 B;  1VQL F;  2HP0 B;  2HS0 A;  1K8A H;  2I6R A;  3MQW A;  5EB0 A;  1M90 H;  2DYY A;  1VQP F;  5GAN K;  3FPI A;  2LBW A;  3HJW C;  3DDN A;  5ITZ B;  3CPQ A;  5JVD B;  4B62 A;  1U40 A;  5GIO C;  1SA0 B;  2YYE A;  3WPW A;  2QA4 F;  3HAX D;  5FNV B;  2LBT A;  4E6E A;  4LCK A;  3JAW B;  4ZHW A;  4EB6 A;  3RYH B;  5LOV B;  3RA5 A;  1K73 H;  2NMU A;  3OBY A;  1J7H A;  1W5F A;  5GON B;  2BTU A;  4DRX B;  2RHL A;  1YJN F;  4IHJ B;  3VMF B;  5AVM A;  2VAM A;  5LP6 A;  1T0K B;  1RA4 A;  3G4S F;  4O4H B;  2RHO A;  2RB9 A;  2G9I A;  4RHA A;  5ITZ A;  1IV2 A;  5JVD A;  3SIV A;  1R1M A;  4ERH A;  1Q8R A;  2LBX A;  1GZ0 A;  5EIB D;  5FNV A;  1JY8 A;  3D54 A;  4X3M A;  3JAW A;  1RLG A;  5HY4 A;  3WJQ A;  1IV3 A;  2KGW A;  3RYH A;  2AIZ P;  3LYB A;  2V9Y A;  3IEQ A;  5MN4 A;  2BO1 A;  3VO8 A;  1QVF F;  5A2Q M;  2Z01 A;  4ZHV A;  5GON A;  3CME F;  3JAL B;  3CB2 A;  3S0H A;  2ZAU A;  3OON A;  3ZP4 A;  5B8F A;  2HVY D;  3RA6 A;  3U0O A;  4IHJ A;  3WGL A;  2OZB A;  3NK7 A;  4EI7 A;  1W55 A;  1YJ9 F;  3HWU A;  4G4Y A;  3M84 A;  4M8I A;  3F6M A;  3I55 F;  4O4H A;  5CA0 B;  4C8G A;  3UT5 B;  5HP8 A; 
#chains in the Genus database with same CATH homology
 2HP3 A;  1SZQ A;  2HP0 A;  2HP0 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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