1SZQA

Crystal structure of 2-methylcitrate dehydratase
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
473
structure length
473
Chain Sequence
EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of 2-methylcitrate dehydratase
rcsb
source organism Escherichia coli
molecule tags Structural genomics, lyase
molecule keywords 2-methylcitrate dehydratase
total genus 167
structure length 473
sequence length 473
chains with identical sequence B
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03972 MmgE_PrpD MmgE/PrpD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4100.10 Mainly Alpha Orthogonal Bundle 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD 1szqA01
3.30.1330.120 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 2-methylcitrate dehydratase PrpD 1szqA02
1SZQA 2HP0B 2HP0A 2HP3A
chains in the Genus database with same CATH superfamily
5GAPK 5BMVA 2Z1FA 4IIJB 4O4LA 5KX5B 3HWUA 3F0FA 2W8BC 3K2XA 3RYFB 3G4SF 4I50B 5GIPC 2UYPA 3AGKA 3JALB 4ZOLB 5G4UC 5GONB 1XRGA 2R751 3JATA 3OW2F 4B45A 2HP0B 1Z5VA 3MBMA 3CCQF 4HNAB 3VI6A 3S0YA 3HKEA 3HKBA 2HRUA 3J80M 2CVLA 1GO1A 2KTVA 5EYPA 1RLUA 4B62A 1DBFA 5EIBD 4O4IA 2ZODA 2HS0A 4FFBB 5EB0A 2OHWA 1X7OA 1UFYA 1DT9A 2ALEA 3RA6A 5IT9M 4O4HA 4HNAA 3V7EA 4LNUB 3KJJA 4WBNA 4ZHQA 5JCOC 1VQKF 2VAMA 2IG8A 3DC2A 3J7AR 1U40A 3O85A 3B6NA 2QI2A 4IIJA 3VO8A 3F0GA 5ITZA 3CC2F 1JN1A 2G9IA 3CYQA 2BO1A 1W41A 5IYZB 3LWPC 5LYJA 1RA4A 5IJ0A 5A2QM 5J2UB 1T0KB 3VOBA 1W59A 5LP6B 5FNVA 5JCOA 3R0PA 1TVKA 2CWJA 3ON1A 2HP0A 3JASB 4ZHVA 1M1KH 4IHJA 1RQ2A 4DRXA 4F6RA 1VQVA 1KNJA 3ZO8A 5IYZA 1VQ7F 3HKCA 3LMEA 3CCRF 3CPWF 4C8GA 3HKDB 5LP6A 3DDNA 4XCQA 3CC7F 4FFBA 2NMUA 2LBWA 2QTPA 3N2GA 1IPAA 2LBTA 2AMTA 2HS4A 2UZHA 4BT3A 1KQSF 3CC4F 5CB4B 1JY8A 2UYNB 4X1YB 1YJNF 4O2BB 3S0HA 3JARA 2EWCA 2YXZA 1QVGF 3JAKB 3F6MA 4YJ2A 3JVHA 3ERNA 1W3EX 4I4TA 1IV2A 5EWRA 3WGMA 3IEWA 3PAFA 2RHLA 2OTMA 4KWEA 1W5EA 2CHTA 4G4WA 3CMEF 4G4XA 1VQ6F 1OFUA 5J2UA 5CB4A 5EB1B 5JH7B 4B5CA 3RYCA 4YJ3A 3NK7A 4R40B 3I55F 3N2KA 4EI8A 2VAPA 4O2BA 1VQNF 3RYIA 1OAPA 2WALA 3F0EA 1U3PA 4I50A 1K8AH 4TV8B 5EZYB 1VK3A 3JCMM 3ZP4A 3FPIA 5CA0B 1J7HA 3JASA 2JNBA 2UYJA 4ZI7B 3PLAC 3NK6A 3CCMF 3JATB 1H7MA 2Z1UA 4BT5A 1Q86H 1VHAA 2ZF8A 2HS3A 1XBIA 3F0DA 1JFFB 4I55A 5ITZB 2QEXF 3LYBA 1VH8A 1RLGA 1QAHA 3WJQA 2H6LA 5LYJB 3K12A 3N2GB 5HY2A 4E6EA 5GIOC 5CA0A 4X1YA 3LWVC 3EORA 1KC8H 3CXCF 4IHJB 2B33A 3IKEA 4NWOB 4DRXB 2Q1YA 1NMUB 4C82A 2P6YA 5CA1A 4X1KB 1NJIH 3IMPA 3P0ZA 3IKFA 3LWOC 2ZOVA 4O4JB 3VMFB 3UT5A 5LXTA 2RHHA 5KMGB 3HJWC 3BYQA 4EB6A 3P10A 2IQQA 3FD5A 5EZYA 1YITF 5HP8A 2H8CA 1S72F 1SZQA 3CCJF 4X3LA 5EAZA 3N4ZA 5HXUA 1CN7A 2UYKA 3WXMB 3C9RA 2LCAA 2N48A 4TV9A 4B46A 5G4VC 2L26A 3FFMA 1Z5WA 2GZLA 4O2AB 4ZK7A 5KX5A 3RYHB 3SIVA 2H8EA 3RYFA 3CMAF 2HX0A 3FD6A 5J2TB 4X1IA 2PHNA 1K9MH 3RYCB 3K0TA 3HKDA 4ERHA 3M1XA 1X25A 5GONA 5EO3A 1W581 3ELCA 3MQWA 5MN6A 4BT2A 1X7PA 5AVMA 2YYEA 4ZHWA 2Q1XA 3KE1A 3HKEB 3S03A 3N4YA 3OBYA 3G71F 1W57A 2VAWA 4X1KA 2OTJF 2CHSA 3LWQC 1QD9A 1PF5A 1UI9A 3QTYA 5KMGA 3HAXD 3T80A 3CCVF 2RHOA 3VIUA 1XV2A 2VXYA 3Q8HA 1VQOF 2R6R1 1FSZA 4YJ3B 4WBNB 3WGNA 1Q8RA 2KGWA 2KG4A 4ZHYB 3WGLA 2Z01A 3NVKE 1W42A 4G4VA 4TV9B 3HTNA 4X20A 3TD3A 3CPQA 3TD5A 5B8FA 1FNJA 1XHOA 1YJWF 1RQ7A 1VQ5F 5IJ0B 5EYPB 4U39A 3V4DA 3V3TA 3VOAA 2BTQB 4BVSA 3WJRA 3CD6F 4X20B 3MCAB 4BY9D 3D00A 5LP6C 3CB2A 1R1MA 4O4HB 1QVFF 2BTOA 2I6DA 2FC3A 3NMUC 1TUBA 4C8IA 1SDSA 2CZWA 3QHDA 4BVRA 4BVTA 3E22A 3RYHA 3LWRC 2OZBA 4G4YA 3CCUF 2PMPA 4LCKA 2RB9A 1Q81H 3HKBB 2Z1TA 5JQGA 3VYSC 4TUYB 3RA5A 4X1IB 2AIFA 3JAKA 4YJ2B 4PWTA 1NQ3A 3J81M 3GTZA 4RHAA 2MQEA 3V7QA 3CCLF 1VQ4F 3KHNA 3S02A 3L7QA 4C8EA 2GLZA 5GANK 3CG6A 3KIZA 5JH7A 3CCSF 4ZHQB 2VGNA 3IEQA 3K14A 3OBWA 4O2AA 3WPWA 3TD4A 3N2KB 1GX1A 4BT6A 3JAWB 1ONIA 2Z1EA 3GYQA 1IV4A 3U0OA 4G88A 3OONA 3VYUC 4TZZA 1GO0A 5FNVB 4BVQA 2UYNA 1H47A 2RHJA 3LDTA 3NVIB 3S0WA 3CCEF 3G6EF 1H48A 3LFOA 4C4WC 2QA4F 4I4TB 1M90H 1E7KA 5IJ9B 1JD1A 1W40A 1VQMF 5EIBC 1CLIA 3GHZA 2I6RA 1YIJF 3KJKA 5JVDB 1K73H 3HKCB 4X3MA 5HY4A 5LA6A 2ZVZA 2HP3A 3C9SA 1VQ9F 2ZAUA 4BW0B 1ODEA 1FFXB 3SIUA 4BT4A 3D54A 4NUTA 1Q7YH 5MN5A 4NQ3A 4C81A 3VCZA 1TUBB 4ZI7A 1N8RH 1YI2F 5LOVB 1YJ9F 3JARB 5HWEA 4EI7A 2DYYA 2HRYA 3ESJA 3E22B 1VQ8F 4EB6B 3C8LA 1GZ0A 3C9TA 3FBAA 1Q82H 1PXWA 2K1SA 2HQSC 1VQLF 3WGJA 1W5FA 3S06A 3JAWA 5MN4A 1YGYA 4TUYA 1FNKA 5C8YB 2DT4A 3WPXA 3JAMM 3ZP7A 4LNUA 4ZOLA 5HXZA 3MCQA 5HY1A 1X52A 3D01A 2VGMA 3RYIB 2CSLA 1W2BF 3E1YA 2V9YA 5IJ9A 1QU9A 5FLXM 4TV8A 1KD1H 3RE3A 5JVDA 3MDOA 1IV3A 5GINC 2KTUA 2FGYA 3CYPB 5LA6B 5FJ4C 3I3FA 5DCVA 3E20B 3UT5B 1W5AA 4O4JA 5LXTB 2AIZP 1U3LA 1JFFA 4I55B 5JQGB 1TVKB 2LBXA 1ZWZA 1FFXA 3JALA 4EI9A 3M4SA 1SA0A 5LOVA 1W55A 3VYTC 4DXDA 1KNKA 2HVYD 1COMA 2CW4A 3C9UA 4BT7A 3WJPA 5HY0A 1YQNA 3I7TA 2ZVYA 3M84A 5CA1B 1VQPF 3P4EA 4RQOA 2GVIA 2BTUA 4U3JB 5C8YA 5J2TA 1U43A 4O4IB 2F9ZC 5BMVB 1IV1A 2OTLF 3ZOPA 5HP7A 1SA0B 3QUWA 4O4LB 3WGKA 1T0AA 4M8IA 1YHQF 2IAFA 1W5BA 3VTIC 3I56F 4F6RB 3IR9A 4U3JA 1CK2A 4G4ZA 1JJ2F
chains in the Genus database with same CATH topology
1SZQA 2HP0B 2HP0A 2HP3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZQ A;  2HP0 B;  2HP0 A;  2HP3 A; 
#chains in the Genus database with same CATH topology
 5GAP K;  5BMV A;  2Z1F A;  4IIJ B;  4O4L A;  5KX5 B;  3HWU A;  3F0F A;  2W8B C;  3K2X A;  3RYF B;  3G4S F;  4I50 B;  5GIP C;  2UYP A;  3AGK A;  3JAL B;  4ZOL B;  5G4U C;  5GON B;  1XRG A;  2R75 1;  3JAT A;  3OW2 F;  4B45 A;  2HP0 B;  1Z5V A;  3MBM A;  3CCQ F;  4HNA B;  3VI6 A;  3S0Y A;  3HKE A;  3HKB A;  2HRU A;  3J80 M;  2CVL A;  1GO1 A;  2KTV A;  5EYP A;  1RLU A;  4B62 A;  1DBF A;  5EIB D;  4O4I A;  2ZOD A;  2HS0 A;  4FFB B;  5EB0 A;  2OHW A;  1X7O A;  1UFY A;  1DT9 A;  2ALE A;  3RA6 A;  5IT9 M;  4O4H A;  4HNA A;  3V7E A;  4LNU B;  3KJJ A;  4WBN A;  4ZHQ A;  5JCO C;  1VQK F;  2VAM A;  2IG8 A;  3DC2 A;  3J7A R;  1U40 A;  3O85 A;  3B6N A;  2QI2 A;  4IIJ A;  3VO8 A;  3F0G A;  5ITZ A;  3CC2 F;  1JN1 A;  2G9I A;  3CYQ A;  2BO1 A;  1W41 A;  5IYZ B;  3LWP C;  5LYJ A;  1RA4 A;  5IJ0 A;  5A2Q M;  5J2U B;  1T0K B;  3VOB A;  1W59 A;  5LP6 B;  5FNV A;  5JCO A;  3R0P A;  1TVK A;  2CWJ A;  3ON1 A;  2HP0 A;  3JAS B;  4ZHV A;  1M1K H;  4IHJ A;  1RQ2 A;  4DRX A;  4F6R A;  1VQV A;  1KNJ A;  3ZO8 A;  5IYZ A;  1VQ7 F;  3HKC A;  3LME A;  3CCR F;  3CPW F;  4C8G A;  3HKD B;  5LP6 A;  3DDN A;  4XCQ A;  3CC7 F;  4FFB A;  2NMU A;  2LBW A;  2QTP A;  3N2G A;  1IPA A;  2LBT A;  2AMT A;  2HS4 A;  2UZH A;  4BT3 A;  1KQS F;  3CC4 F;  5CB4 B;  1JY8 A;  2UYN B;  4X1Y B;  1YJN F;  4O2B B;  3S0H A;  3JAR A;  2EWC A;  2YXZ A;  1QVG F;  3JAK B;  3F6M A;  4YJ2 A;  3JVH A;  3ERN A;  1W3E X;  4I4T A;  1IV2 A;  5EWR A;  3WGM A;  3IEW A;  3PAF A;  2RHL A;  2OTM A;  4KWE A;  1W5E A;  2CHT A;  4G4W A;  3CME F;  4G4X A;  1VQ6 F;  1OFU A;  5J2U A;  5CB4 A;  5EB1 B;  5JH7 B;  4B5C A;  3RYC A;  4YJ3 A;  3NK7 A;  4R40 B;  3I55 F;  3N2K A;  4EI8 A;  2VAP A;  4O2B A;  1VQN F;  3RYI A;  1OAP A;  2WAL A;  3F0E A;  1U3P A;  4I50 A;  1K8A H;  4TV8 B;  5EZY B;  1VK3 A;  3JCM M;  3ZP4 A;  3FPI A;  5CA0 B;  1J7H A;  3JAS A;  2JNB A;  2UYJ A;  4ZI7 B;  3PLA C;  3NK6 A;  3CCM F;  3JAT B;  1H7M A;  2Z1U A;  4BT5 A;  1Q86 H;  1VHA A;  2ZF8 A;  2HS3 A;  1XBI A;  3F0D A;  1JFF B;  4I55 A;  5ITZ B;  2QEX F;  3LYB A;  1VH8 A;  1RLG A;  1QAH A;  3WJQ A;  2H6L A;  5LYJ B;  3K12 A;  3N2G B;  5HY2 A;  4E6E A;  5GIO C;  5CA0 A;  4X1Y A;  3LWV C;  3EOR A;  1KC8 H;  3CXC F;  4IHJ B;  2B33 A;  3IKE A;  4NWO B;  4DRX B;  2Q1Y A;  1NMU B;  4C82 A;  2P6Y A;  5CA1 A;  4X1K B;  1NJI H;  3IMP A;  3P0Z A;  3IKF A;  3LWO C;  2ZOV A;  4O4J B;  3VMF B;  3UT5 A;  5LXT A;  2RHH A;  5KMG B;  3HJW C;  3BYQ A;  4EB6 A;  3P10 A;  2IQQ A;  3FD5 A;  5EZY A;  1YIT F;  5HP8 A;  2H8C A;  1S72 F;  1SZQ A;  3CCJ F;  4X3L A;  5EAZ A;  3N4Z A;  5HXU A;  1CN7 A;  2UYK A;  3WXM B;  3C9R A;  2LCA A;  2N48 A;  4TV9 A;  4B46 A;  5G4V C;  2L26 A;  3FFM A;  1Z5W A;  2GZL A;  4O2A B;  4ZK7 A;  5KX5 A;  3RYH B;  3SIV A;  2H8E A;  3RYF A;  3CMA F;  2HX0 A;  3FD6 A;  5J2T B;  4X1I A;  2PHN A;  1K9M H;  3RYC B;  3K0T A;  3HKD A;  4ERH A;  3M1X A;  1X25 A;  5GON A;  5EO3 A;  1W58 1;  3ELC A;  3MQW A;  5MN6 A;  4BT2 A;  1X7P A;  5AVM A;  2YYE A;  4ZHW A;  2Q1X A;  3KE1 A;  3HKE B;  3S03 A;  3N4Y A;  3OBY A;  3G71 F;  1W57 A;  2VAW A;  4X1K A;  2OTJ F;  2CHS A;  3LWQ C;  1QD9 A;  1PF5 A;  1UI9 A;  3QTY A;  5KMG A;  3HAX D;  3T80 A;  3CCV F;  2RHO A;  3VIU A;  1XV2 A;  2VXY A;  3Q8H A;  1VQO F;  2R6R 1;  1FSZ A;  4YJ3 B;  4WBN B;  3WGN A;  1Q8R A;  2KGW A;  2KG4 A;  4ZHY B;  3WGL A;  2Z01 A;  3NVK E;  1W42 A;  4G4V A;  4TV9 B;  3HTN A;  4X20 A;  3TD3 A;  3CPQ A;  3TD5 A;  5B8F A;  1FNJ A;  1XHO A;  1YJW F;  1RQ7 A;  1VQ5 F;  5IJ0 B;  5EYP B;  4U39 A;  3V4D A;  3V3T A;  3VOA A;  2BTQ B;  4BVS A;  3WJR A;  3CD6 F;  4X20 B;  3MCA B;  4BY9 D;  3D00 A;  5LP6 C;  3CB2 A;  1R1M A;  4O4H B;  1QVF F;  2BTO A;  2I6D A;  2FC3 A;  3NMU C;  1TUB A;  4C8I A;  1SDS A;  2CZW A;  3QHD A;  4BVR A;  4BVT A;  3E22 A;  3RYH A;  3LWR C;  2OZB A;  4G4Y A;  3CCU F;  2PMP A;  4LCK A;  2RB9 A;  1Q81 H;  3HKB B;  2Z1T A;  5JQG A;  3VYS C;  4TUY B;  3RA5 A;  4X1I B;  2AIF A;  3JAK A;  4YJ2 B;  4PWT A;  1NQ3 A;  3J81 M;  3GTZ A;  4RHA A;  2MQE A;  3V7Q A;  3CCL F;  1VQ4 F;  3KHN A;  3S02 A;  3L7Q A;  4C8E A;  2GLZ A;  5GAN K;  3CG6 A;  3KIZ A;  5JH7 A;  3CCS F;  4ZHQ B;  2VGN A;  3IEQ A;  3K14 A;  3OBW A;  4O2A A;  3WPW A;  3TD4 A;  3N2K B;  1GX1 A;  4BT6 A;  3JAW B;  1ONI A;  2Z1E A;  3GYQ A;  1IV4 A;  3U0O A;  4G88 A;  3OON A;  3VYU C;  4TZZ A;  1GO0 A;  5FNV B;  4BVQ A;  2UYN A;  1H47 A;  2RHJ A;  3LDT A;  3NVI B;  3S0W A;  3CCE F;  3G6E F;  1H48 A;  3LFO A;  4C4W C;  2QA4 F;  4I4T B;  1M90 H;  1E7K A;  5IJ9 B;  1JD1 A;  1W40 A;  1VQM F;  5EIB C;  1CLI A;  3GHZ A;  2I6R A;  1YIJ F;  3KJK A;  5JVD B;  1K73 H;  3HKC B;  4X3M A;  5HY4 A;  5LA6 A;  2ZVZ A;  2HP3 A;  3C9S A;  1VQ9 F;  2ZAU A;  4BW0 B;  1ODE A;  1FFX B;  3SIU A;  4BT4 A;  3D54 A;  4NUT A;  1Q7Y H;  5MN5 A;  4NQ3 A;  4C81 A;  3VCZ A;  1TUB B;  4ZI7 A;  1N8R H;  1YI2 F;  5LOV B;  1YJ9 F;  3JAR B;  5HWE A;  4EI7 A;  2DYY A;  2HRY A;  3ESJ A;  3E22 B;  1VQ8 F;  4EB6 B;  3C8L A;  1GZ0 A;  3C9T A;  3FBA A;  1Q82 H;  1PXW A;  2K1S A;  2HQS C;  1VQL F;  3WGJ A;  1W5F A;  3S06 A;  3JAW A;  5MN4 A;  1YGY A;  4TUY A;  1FNK A;  5C8Y B;  2DT4 A;  3WPX A;  3JAM M;  3ZP7 A;  4LNU A;  4ZOL A;  5HXZ A;  3MCQ A;  5HY1 A;  1X52 A;  3D01 A;  2VGM A;  3RYI B;  2CSL A;  1W2B F;  3E1Y A;  2V9Y A;  5IJ9 A;  1QU9 A;  5FLX M;  4TV8 A;  1KD1 H;  3RE3 A;  5JVD A;  3MDO A;  1IV3 A;  5GIN C;  2KTU A;  2FGY A;  3CYP B;  5LA6 B;  5FJ4 C;  3I3F A;  5DCV A;  3E20 B;  3UT5 B;  1W5A A;  4O4J A;  5LXT B;  2AIZ P;  1U3L A;  1JFF A;  4I55 B;  5JQG B;  1TVK B;  2LBX A;  1ZWZ A;  1FFX A;  3JAL A;  4EI9 A;  3M4S A;  1SA0 A;  5LOV A;  1W55 A;  3VYT C;  4DXD A;  1KNK A;  2HVY D;  1COM A;  2CW4 A;  3C9U A;  4BT7 A;  3WJP A;  5HY0 A;  1YQN A;  3I7T A;  2ZVY A;  3M84 A;  5CA1 B;  1VQP F;  3P4E A;  4RQO A;  2GVI A;  2BTU A;  4U3J B;  5C8Y A;  5J2T A;  1U43 A;  4O4I B;  2F9Z C;  5BMV B;  1IV1 A;  2OTL F;  3ZOP A;  5HP7 A;  1SA0 B;  3QUW A;  4O4L B;  3WGK A;  1T0A A;  4M8I A;  1YHQ F;  2IAF A;  1W5B A;  3VTI C;  3I56 F;  4F6R B;  3IR9 A;  4U3J A;  1CK2 A;  4G4Z A;  1JJ2 F; 
#chains in the Genus database with same CATH homology
 1SZQ A;  2HP0 B;  2HP0 A;  2HP3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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