2HP0B

Crystal structure of iminodisuccinate epimerase
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
447
structure length
445
Chain Sequence
HMFTTKLAEKVVSAWKAKISQPALKAAQDGVIDTVAAALGGVTEHSVQVALKYVAATGGSGDSKLWGVNQRSNMFDAAFVNGMAAHAIDFDDSFPVMRGHPSSSLVPAIFAVGEHVGANGHNCLKSYVLGIEVVATLGRAVGKGHYLAGWHPTSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNFGTMTKPMHTGSAARNGVLSAWLSMQSFTGCQTVFDDAEGILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYKKSWPSYANHKPLAGLFAIMKEHGLTGQDISHVDVGFLPGVEKPLLYMDPRTEEAKFSIEANIGAALLDGEVSLASFEIEHLDRPAMRAAMKKVTRFDMPSETTFSGTTGYTDIVVHTADGKIERRIEATPGSLEDPMDDAHLERKFKDCTAWMPFGESGLLFDRLRSLTADQGIKTVQP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords IDS-epimerase
publication title Three-dimensional Structure of Iminodisuccinate Epimerase Defines the Fold of the MmgE/PrpD Protein Family.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
total genus 155
structure length 445
sequence length 447
ec nomenclature
pdb deposition date 2006-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03972 MmgE_PrpD MmgE/PrpD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4100.10 Mainly Alpha Orthogonal Bundle 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD 2hp0B01
3.30.1330.120 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 2-methylcitrate dehydratase PrpD 2hp0B02
2HP3A 1SZQA 2HP0A 2HP0B
chains in the Genus database with same CATH superfamily
3I3FA 1QU9A 3K14A 4X1KB 4X1IB 4R40B 5IYZA 1JFFB 2VGNA 5CA0A 5EYPB 2GLZA 2VXYA 4HNAB 4F6RA 3WGNA 1OAPA 2PMPA 3TD3A 5IJ0A 5CB4B 4ZHWA 4BT5A 4G4VA 3CPWF 5DCVA 1QAHA 2CW4A 4I50B 3NK6A 3CPQA 3G6EF 4I55B 3RYHA 5LA6A 2VAWA 3IKFA 4O4HA 3N4YA 1W581 1K8AH 3IMPA 3PAFA 2R751 5LP6C 5LXTA 1M90H 4RQOA 3HKCA 2CWJA 2HRYA 1YGYA 5LP6A 2H8CA 3D01A 5HY2A 2UZHA 3IEWA 2MQEA 3N2KA 4O4LB 2VGMA 1OFUA 1U3PA 2Z1UA 1GO0A 1TUBA 4XCQA 3SIUA 1W40A 3VMFB 3C9UA 4EI9A 5JCOC 1W5AA 2ZF8A 3AGKA 1VQ5F 1W5EA 3JAWB 3CCSF 3RA6A 3HKEB 3HJWC 1W59A 1T0KB 4X3MA 4B45A 3ZO8A 5C8YA 4BT4A 5J2UA 2ZVYA 3FD5A 1W42A 4X20A 4G4XA 3FBAA 5JVDB 3S03A 2N48A 4TV9B 1K9MH 3MCAB 2BTOA 4LCKA 3E22A 1YJ9F 1U3LA 4ZHQB 2Z1EA 3OONA 2RHJA 1H47A 3P10A 4O4IB 3ON1A 1VH8A 5LYJA 4PWTA 3WGKA 2DYYA 3CCEF 1GZ0A 3KE1A 4U3JA 3LWVC 1DBFA 4C8IA 3LYBA 4C8EA 2LCAA 3VTIC 5GINC 3F6MA 2QI2A 1K73H 3CCLF 2I6RA 3C9TA 1VQVA 3CB2A 4TZZA 3M1XA 2JNBA 2IAFA 1VQ9F 3F0FA 3IEQA 3JAKB 5ITZA 5KMGB 1VQ6F 5EB0A 5EWRA 3EORA 5IJ9B 1QVGF 4BT6A 2W8BC 2QEXF 4IIJB 1M1KH 4G4WA 1T0AA 2WALA 2OTJF 1Z5WA 2B33A 3JCMM 3NVIB 1XV2A 5HP7A 4DRXB 3I55F 3JASB 5LOVB 1TVKB 4B46A 1ODEA 4YJ2B 4BVTA 4O4JB 4TUYB 1J7HA 3F0GA 5EB1B 3S0WA 3M4SA 4YJ3A 3MCQA 1RQ2A 1PXWA 3V3TA 3WJQA 2CSLA 1FNKA 3WXMB 1U40A 1VQ4F 4EI7A 2HQSC 2KG4A 4TV8A 3CCVF 3RYIB 1S72F 3MDOA 3GYQA 4U39A 1VK3A 3GHZA 5IYZB 3F0EA 1YITF 5CA0B 3S06A 3QTYA 4F6RB 2ZAUA 3G4SF 1X25A 3TD5A 1PF5A 3N2GA 3OBYA 5GIPC 5IJ0B 2OTLF 3CMAF 3WGJA 2QA4F 2CVLA 1NMUB 3IR9A 1IV3A 4BVSA 1SA0A 5BMVA 3LFOA 3VYTC 2UYNA 3VOBA 2CHSA 3CCMF 2HP0A 5HY0A 5LA6B 2ALEA 1JJ2F 3JVHA 1YJWF 4O4HB 3CG6A 3HKDA 1Q8RA 2HVYD 1W2BF 3LWOC 5LXTB 2OTMA 3V7EA 2AIZP 2ZODA 3HKCB 5JH7A 1E7KA 2DT4A 1KD1H 3ELCA 1W3EX 2ZOVA 3VI6A 4O2AB 4G4ZA 5A2QM 5LP6B 3HAXD 2HX0A 3TD4A 1VQKF 1FFXA 3LWRC 4I50A 5HXUA 5JQGA 2L26A 3FD6A 4FFBA 4WBNA 4I55A 3N2KB 3M84A 3WJPA 3KJJA 5HY1A 3JALB 3Q8HA 1TUBB 5GONA 3VO8A 1SZQA 1RLUA 2P6YA 1GO1A 5MN4A 3C9RA 3B6NA 2PHNA 4E6EA 3GTZA 3CCJF 1VQ7F 3WPXA 5JCOA 4BT3A 3CXCF 2BTQB 3ZOPA 1Q82H 1IV2A 3JATA 4ZOLA 1NJIH 5MN5A 5C8YB 3I7TA 3D54A 3NK7A 1W57A 1CLIA 2RHLA 4X20B 3KHNA 1IV1A 2OHWA 5EO3A 2VAMA 3V7QA 1JD1A 1ONIA 4NWOB 1YI2F 5J2TA 3E22B 3LWPC 3S0HA 2GVIA 1QD9A 3CYQA 3RE3A 2RHHA 5LYJB 5FNVB 3DDNA 2BTUA 4U3JB 1YIJF 2Q1YA 5MN6A 3HKBB 4KWEA 5GAPK 1CN7A 1RLGA 1YQNA 3CD6F 1H48A 1X7OA 3UT5A 2I6DA 2LBWA 3T80A 4LNUA 4G88A 5KX5A 4IHJB 1X7PA 5ITZB 1FSZA 1X52A 4ZK7A 4EI8A 5AVMA 4X1YA 3E20B 5GIOC 3P4EA 2IQQA 3CYPB 5HXZA 3CCUF 3E1YA 5HWEA 5CA1A 3K2XA 3ZP4A 2FC3A 1VQOF 1H7MA 1N8RH 1CK2A 3JARA 4B5CA 2QTPA 5EIBD 3RYCA 4O2BB 3CC2F 2UYJA 1KNJA 4YJ3B 5HY4A 3CC4F 3J7AR 1U43A 1W5BA 2YXZA 1Q81H 1KNKA 3FFMA 2RB9A 4BVRA 4EB6A 3O85A 4I4TA 3HTNA 4TV8B 3ERNA 2RHOA 2UYKA 4NQ3A 3MQWA 5EZYA 2Z1TA 3KJKA 3RYFA 3VYUC 3J80M 3N2GB 4ZI7A 2BO1A 2UYPA 3G71F 3CCRF 2KGWA 1SA0B 5BMVB 4BT2A 2KTVA 4NUTA 3N4ZA 3OBWA 2UYNB 1VQMF 3CC7F 3RA5A 3LDTA 2R6R1 2HP0B 3RYHB 1COMA 2LBTA 2HS3A 1XHOA 2CHTA 3HKDB 4X1IA 4X1KA 1JFFA 3K0TA 5EYPA 2H8EA 4HNAA 1VQNF 1KC8H 1Z5VA 1W5FA 5CB4A 2GZLA 5JH7B 3V4DA 2LBXA 3DC2A 1KQSF 1FFXB 5EIBC 3ESJA 4M8IA 4BW0B 5JQGB 3C8LA 3QUWA 4FFBB 4WBNB 3WPWA 5GONB 3K12A 4X3LA 2HRUA 1R1MA 1JN1A 2VAPA 2HS4A 2IG8A 3J81M 4ERHA 2FGYA 3C9SA 4ZHVA 4C81A 4O2AA 2G9IA 4ZHYB 4BT7A 3JATB 2F9ZC 4ZOLB 3VCZA 1W41A 5IT9M 4O4LA 5J2UB 3R0PA 1UFYA 3JALA 4B62A 5G4VC 2AMTA 2HS0A 5J2TB 1DT9A 1FNJA 4C8GA 2Q1XA 3S0YA 3QHDA 3JAWA 4BY9D 5HP8A 3I56F 3HKEA 5FJ4C 1Q86H 3BYQA 5G4UC 1W55A 1XRGA 2K1SA 3JAMM 3UT5B 3NVKE 5FLXM 1GX1A 4LNUB 5JVDA 1VQ8F 4G4YA 4TV9A 5KX5B 3NMUC 2V9YA 4ZHQA 4X1YB 3HWUA 3OW2F 1SDSA 4O4IA 3WJRA 3KIZA 1IPAA 5B8FA 1IV4A 2HP3A 5CA1B 2NMUA 5FNVA 2CZWA 1ZWZA 3JARB 3CCQF 3HKBA 3RYCB 1VHAA 3SIVA 3FPIA 1VQPF 2AIFA 4C4WC 1RA4A 1JY8A 3VIUA 2OZBA 2ZVZA 1UI9A 3MBMA 4IHJA 4RHAA 3U0OA 2Z1FA 3ZP7A 4BVQA 3JAKA 5KMGA 3WGLA 1VQLF 2YYEA 4EB6B 4I4TB 1QVFF 1NQ3A 2Z01A 5IJ9A 5GANK 4C82A 5EZYB 4IIJA 1XBIA 3IKEA 3PLAC 3CMEF 1RQ7A 3VYSC 3RYFB 2EWCA 3LMEA 4O2BA 4DRXA 3JASA 5LOVA 4ZI7B 1TVKA 3F0DA 4YJ2A 3L7QA 4O4JA 4DXDA 3VOAA 4TUYA 1YJNF 3D00A 3S02A 3P0ZA 1Q7YH 1YHQF 2H6LA 3LWQC 2KTUA 5EAZA 3RYIA 3WGMA
chains in the Genus database with same CATH topology
2HP3A 1SZQA 2HP0A 2HP0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HP3 A;  1SZQ A;  2HP0 A;  2HP0 B; 
#chains in the Genus database with same CATH topology
 3I3F A;  1QU9 A;  3K14 A;  4X1K B;  4X1I B;  4R40 B;  5IYZ A;  1JFF B;  2VGN A;  5CA0 A;  5EYP B;  2GLZ A;  2VXY A;  4HNA B;  4F6R A;  3WGN A;  1OAP A;  2PMP A;  3TD3 A;  5IJ0 A;  5CB4 B;  4ZHW A;  4BT5 A;  4G4V A;  3CPW F;  5DCV A;  1QAH A;  2CW4 A;  4I50 B;  3NK6 A;  3CPQ A;  3G6E F;  4I55 B;  3RYH A;  5LA6 A;  2VAW A;  3IKF A;  4O4H A;  3N4Y A;  1W58 1;  1K8A H;  3IMP A;  3PAF A;  2R75 1;  5LP6 C;  5LXT A;  1M90 H;  4RQO A;  3HKC A;  2CWJ A;  2HRY A;  1YGY A;  5LP6 A;  2H8C A;  3D01 A;  5HY2 A;  2UZH A;  3IEW A;  2MQE A;  3N2K A;  4O4L B;  2VGM A;  1OFU A;  1U3P A;  2Z1U A;  1GO0 A;  1TUB A;  4XCQ A;  3SIU A;  1W40 A;  3VMF B;  3C9U A;  4EI9 A;  5JCO C;  1W5A A;  2ZF8 A;  3AGK A;  1VQ5 F;  1W5E A;  3JAW B;  3CCS F;  3RA6 A;  3HKE B;  3HJW C;  1W59 A;  1T0K B;  4X3M A;  4B45 A;  3ZO8 A;  5C8Y A;  4BT4 A;  5J2U A;  2ZVY A;  3FD5 A;  1W42 A;  4X20 A;  4G4X A;  3FBA A;  5JVD B;  3S03 A;  2N48 A;  4TV9 B;  1K9M H;  3MCA B;  2BTO A;  4LCK A;  3E22 A;  1YJ9 F;  1U3L A;  4ZHQ B;  2Z1E A;  3OON A;  2RHJ A;  1H47 A;  3P10 A;  4O4I B;  3ON1 A;  1VH8 A;  5LYJ A;  4PWT A;  3WGK A;  2DYY A;  3CCE F;  1GZ0 A;  3KE1 A;  4U3J A;  3LWV C;  1DBF A;  4C8I A;  3LYB A;  4C8E A;  2LCA A;  3VTI C;  5GIN C;  3F6M A;  2QI2 A;  1K73 H;  3CCL F;  2I6R A;  3C9T A;  1VQV A;  3CB2 A;  4TZZ A;  3M1X A;  2JNB A;  2IAF A;  1VQ9 F;  3F0F A;  3IEQ A;  3JAK B;  5ITZ A;  5KMG B;  1VQ6 F;  5EB0 A;  5EWR A;  3EOR A;  5IJ9 B;  1QVG F;  4BT6 A;  2W8B C;  2QEX F;  4IIJ B;  1M1K H;  4G4W A;  1T0A A;  2WAL A;  2OTJ F;  1Z5W A;  2B33 A;  3JCM M;  3NVI B;  1XV2 A;  5HP7 A;  4DRX B;  3I55 F;  3JAS B;  5LOV B;  1TVK B;  4B46 A;  1ODE A;  4YJ2 B;  4BVT A;  4O4J B;  4TUY B;  1J7H A;  3F0G A;  5EB1 B;  3S0W A;  3M4S A;  4YJ3 A;  3MCQ A;  1RQ2 A;  1PXW A;  3V3T A;  3WJQ A;  2CSL A;  1FNK A;  3WXM B;  1U40 A;  1VQ4 F;  4EI7 A;  2HQS C;  2KG4 A;  4TV8 A;  3CCV F;  3RYI B;  1S72 F;  3MDO A;  3GYQ A;  4U39 A;  1VK3 A;  3GHZ A;  5IYZ B;  3F0E A;  1YIT F;  5CA0 B;  3S06 A;  3QTY A;  4F6R B;  2ZAU A;  3G4S F;  1X25 A;  3TD5 A;  1PF5 A;  3N2G A;  3OBY A;  5GIP C;  5IJ0 B;  2OTL F;  3CMA F;  3WGJ A;  2QA4 F;  2CVL A;  1NMU B;  3IR9 A;  1IV3 A;  4BVS A;  1SA0 A;  5BMV A;  3LFO A;  3VYT C;  2UYN A;  3VOB A;  2CHS A;  3CCM F;  2HP0 A;  5HY0 A;  5LA6 B;  2ALE A;  1JJ2 F;  3JVH A;  1YJW F;  4O4H B;  3CG6 A;  3HKD A;  1Q8R A;  2HVY D;  1W2B F;  3LWO C;  5LXT B;  2OTM A;  3V7E A;  2AIZ P;  2ZOD A;  3HKC B;  5JH7 A;  1E7K A;  2DT4 A;  1KD1 H;  3ELC A;  1W3E X;  2ZOV A;  3VI6 A;  4O2A B;  4G4Z A;  5A2Q M;  5LP6 B;  3HAX D;  2HX0 A;  3TD4 A;  1VQK F;  1FFX A;  3LWR C;  4I50 A;  5HXU A;  5JQG A;  2L26 A;  3FD6 A;  4FFB A;  4WBN A;  4I55 A;  3N2K B;  3M84 A;  3WJP A;  3KJJ A;  5HY1 A;  3JAL B;  3Q8H A;  1TUB B;  5GON A;  3VO8 A;  1SZQ A;  1RLU A;  2P6Y A;  1GO1 A;  5MN4 A;  3C9R A;  3B6N A;  2PHN A;  4E6E A;  3GTZ A;  3CCJ F;  1VQ7 F;  3WPX A;  5JCO A;  4BT3 A;  3CXC F;  2BTQ B;  3ZOP A;  1Q82 H;  1IV2 A;  3JAT A;  4ZOL A;  1NJI H;  5MN5 A;  5C8Y B;  3I7T A;  3D54 A;  3NK7 A;  1W57 A;  1CLI A;  2RHL A;  4X20 B;  3KHN A;  1IV1 A;  2OHW A;  5EO3 A;  2VAM A;  3V7Q A;  1JD1 A;  1ONI A;  4NWO B;  1YI2 F;  5J2T A;  3E22 B;  3LWP C;  3S0H A;  2GVI A;  1QD9 A;  3CYQ A;  3RE3 A;  2RHH A;  5LYJ B;  5FNV B;  3DDN A;  2BTU A;  4U3J B;  1YIJ F;  2Q1Y A;  5MN6 A;  3HKB B;  4KWE A;  5GAP K;  1CN7 A;  1RLG A;  1YQN A;  3CD6 F;  1H48 A;  1X7O A;  3UT5 A;  2I6D A;  2LBW A;  3T80 A;  4LNU A;  4G88 A;  5KX5 A;  4IHJ B;  1X7P A;  5ITZ B;  1FSZ A;  1X52 A;  4ZK7 A;  4EI8 A;  5AVM A;  4X1Y A;  3E20 B;  5GIO C;  3P4E A;  2IQQ A;  3CYP B;  5HXZ A;  3CCU F;  3E1Y A;  5HWE A;  5CA1 A;  3K2X A;  3ZP4 A;  2FC3 A;  1VQO F;  1H7M A;  1N8R H;  1CK2 A;  3JAR A;  4B5C A;  2QTP A;  5EIB D;  3RYC A;  4O2B B;  3CC2 F;  2UYJ A;  1KNJ A;  4YJ3 B;  5HY4 A;  3CC4 F;  3J7A R;  1U43 A;  1W5B A;  2YXZ A;  1Q81 H;  1KNK A;  3FFM A;  2RB9 A;  4BVR A;  4EB6 A;  3O85 A;  4I4T A;  3HTN A;  4TV8 B;  3ERN A;  2RHO A;  2UYK A;  4NQ3 A;  3MQW A;  5EZY A;  2Z1T A;  3KJK A;  3RYF A;  3VYU C;  3J80 M;  3N2G B;  4ZI7 A;  2BO1 A;  2UYP A;  3G71 F;  3CCR F;  2KGW A;  1SA0 B;  5BMV B;  4BT2 A;  2KTV A;  4NUT A;  3N4Z A;  3OBW A;  2UYN B;  1VQM F;  3CC7 F;  3RA5 A;  3LDT A;  2R6R 1;  2HP0 B;  3RYH B;  1COM A;  2LBT A;  2HS3 A;  1XHO A;  2CHT A;  3HKD B;  4X1I A;  4X1K A;  1JFF A;  3K0T A;  5EYP A;  2H8E A;  4HNA A;  1VQN F;  1KC8 H;  1Z5V A;  1W5F A;  5CB4 A;  2GZL A;  5JH7 B;  3V4D A;  2LBX A;  3DC2 A;  1KQS F;  1FFX B;  5EIB C;  3ESJ A;  4M8I A;  4BW0 B;  5JQG B;  3C8L A;  3QUW A;  4FFB B;  4WBN B;  3WPW A;  5GON B;  3K12 A;  4X3L A;  2HRU A;  1R1M A;  1JN1 A;  2VAP A;  2HS4 A;  2IG8 A;  3J81 M;  4ERH A;  2FGY A;  3C9S A;  4ZHV A;  4C81 A;  4O2A A;  2G9I A;  4ZHY B;  4BT7 A;  3JAT B;  2F9Z C;  4ZOL B;  3VCZ A;  1W41 A;  5IT9 M;  4O4L A;  5J2U B;  3R0P A;  1UFY A;  3JAL A;  4B62 A;  5G4V C;  2AMT A;  2HS0 A;  5J2T B;  1DT9 A;  1FNJ A;  4C8G A;  2Q1X A;  3S0Y A;  3QHD A;  3JAW A;  4BY9 D;  5HP8 A;  3I56 F;  3HKE A;  5FJ4 C;  1Q86 H;  3BYQ A;  5G4U C;  1W55 A;  1XRG A;  2K1S A;  3JAM M;  3UT5 B;  3NVK E;  5FLX M;  1GX1 A;  4LNU B;  5JVD A;  1VQ8 F;  4G4Y A;  4TV9 A;  5KX5 B;  3NMU C;  2V9Y A;  4ZHQ A;  4X1Y B;  3HWU A;  3OW2 F;  1SDS A;  4O4I A;  3WJR A;  3KIZ A;  1IPA A;  5B8F A;  1IV4 A;  2HP3 A;  5CA1 B;  2NMU A;  5FNV A;  2CZW A;  1ZWZ A;  3JAR B;  3CCQ F;  3HKB A;  3RYC B;  1VHA A;  3SIV A;  3FPI A;  1VQP F;  2AIF A;  4C4W C;  1RA4 A;  1JY8 A;  3VIU A;  2OZB A;  2ZVZ A;  1UI9 A;  3MBM A;  4IHJ A;  4RHA A;  3U0O A;  2Z1F A;  3ZP7 A;  4BVQ A;  3JAK A;  5KMG A;  3WGL A;  1VQL F;  2YYE A;  4EB6 B;  4I4T B;  1QVF F;  1NQ3 A;  2Z01 A;  5IJ9 A;  5GAN K;  4C82 A;  5EZY B;  4IIJ A;  1XBI A;  3IKE A;  3PLA C;  3CME F;  1RQ7 A;  3VYS C;  3RYF B;  2EWC A;  3LME A;  4O2B A;  4DRX A;  3JAS A;  5LOV A;  4ZI7 B;  1TVK A;  3F0D A;  4YJ2 A;  3L7Q A;  4O4J A;  4DXD A;  3VOA A;  4TUY A;  1YJN F;  3D00 A;  3S02 A;  3P0Z A;  1Q7Y H;  1YHQ F;  2H6L A;  3LWQ C;  2KTU A;  5EAZ A;  3RYI A;  3WGM A; 
#chains in the Genus database with same CATH homology
 2HP3 A;  1SZQ A;  2HP0 A;  2HP0 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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