2H8EA

Structure rusa d70n
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
120
structure length
120
Chain Sequence
b'MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
molecule keywords Crossover junction endodeoxyribonuclease rusA
source organism Escherichia coli
molecule tags Hydrolase
total genus 35
structure length 120
sequence length 120
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8eA00
2H8EA 1Q8RA 2H8CA
chains in the Genus database with same CATH superfamily
4ERHA 4IHJB 3NVKE 4O4IA 5HP7A 3M4SA 1VQ5F 3QUWA 3CB2A 3TD3A 2UYNA 1YJ9F 1XBIA 3V7QA 1W40A 4KWEA 3HAXD 5LP6B 1XV2A 3DC2A 2V9YA 3JCMM 4X1IB 2HP3A 5HP8A 1Z5WA 3V7EA 3ERNA 4BT4A 1VH8A 3GTZA 5GIPC 1Q82H 3CC7F 1T0KB 5FNVB 3FPIA 3LWRC 5DCVA 2CZWA 3ON1A 5JVDB 1CN7A 3VOAA 1W5EA 3MBMA 1Z5VA 2L26A 2UYKA 3KE1A 3CD6F 5MN4A 1U43A 2CWJA 1NQ3A 2HP0B 2UYJA 2RHOA 3N2GB 2VGNA 5EB1B 1IV1A 1VQ4F 3TD5A 4HNAB 4O2BA 2DT4A 1SZQA 1UI9A 5FLXM 3C9RA 1VQKF 3J80M 3E1YA 4RQOA 2ALEA 2JNBA 3J81M 3JAWA 2GLZA 1QVFF 3PLAC 2OHWA 5EYPB 5JH7A 3TD4A 1QAHA 2VAPA 2ZAUA 3R0PA 4EI8A 2HRUA 1GZ0A 3RYCA 2YXZA 5KMGB 5GINC 1SA0A 4M8IA 5J2UB 5JQGA 4IIJA 3JATA 3V4DA 2HS3A 3IEWA 4LNUA 3VMFB 1W42A 5G4UC 2Q1XA 3D01A 5B8FA 5C8YA 4NWOB 2BTUA 1GO1A 3JASB 4TV8B 2P6YA 4B45A 1K8AH 2CVLA 4F6RA 1TVKA 2CHTA 1K9MH 3LMEA 5JH7B 3WJQA 5CA0A 5LXTB 1X7PA 2QEXF 2N48A 4X1YB 1W5FA 2VAMA 1RLGA 2NMUA 2Z1EA 3N2KB 3CCQF 2CSLA 3RYCB 1RA4A 3HKEA 5LOVA 2H8EA 3F0FA 3JARB 3E20B 5JQGB 3IEQA 4IIJB 3EORA 4E6EA 4I50A 1JJ2F 1U3PA 1VQ9F 5GAPK 1VQLF 3WPXA 3LWPC 3HKBA 4F6RB 2VGMA 2ZVYA 5EAZA 3OONA 1TVKB 4I55B 4O4HA 4C4WC 5FJ4C 1RLUA 2CW4A 4BT5A 4ZI7A 2HS4A 3KIZA 3IR9A 5BMVA 4O4LB 4C8IA 5IYZA 5EZYB 5IJ9B 3I3FA 3B6NA 1ODEA 3RYFB 2RHJA 3JVHA 4U39A 3LYBA 5LA6A 2LBWA 5MN6A 1VQNF 2KG4A 1JY8A 3M84A 1Q81H 2Q1YA 3HJWC 1VQ6F 5CA1B 2AIFA 1NJIH 2ZODA 3IKFA 3LWOC 1IV3A 3JALB 4TV9A 5HXUA 1VQ8F 4X3MA 3WGNA 3WXMB 4TUYA 4C8EA 4U3JA 5MN5A 3CC2F 4ZHQB 3CCRF 3P0ZA 3KJJA 3LFOA 1E7KA 2FGYA 4PWTA 5HY1A 2CHSA 2FC3A 2BTQB 4ZOLB 1W5AA 5KX5A 3S03A 1Q7YH 5CB4B 3O85A 1T0AA 1FNKA 3K14A 2F9ZC 3N4YA 4YJ3A 4FFBA 3WGMA 1FFXA 1SDSA 5IJ0B 4O4IB 3VTIC 1KNJA 3OBYA 2YYEA 3M1XA 5GIOC 1VHAA 4EI9A 3I56F 1QD9A 2KTVA 2UYNB 2RHHA 3MDOA 3CCUF 2UZHA 3DDNA 3HKCA 2PMPA 1X52A 3MCQA 1COMA 3WPWA 1W3EX 2AIZP 4YJ3B 3S06A 2Z1TA 2KGWA 1OAPA 1YHQF 4I4TA 1KD1H 4WBNA 4ZK7A 3K2XA 2DYYA 2AMTA 1CLIA 4BW0B 1VQ7F 4G4VA 2OTMA 3AGKA 3JAMM 4X1KA 1ZWZA 1R1MA 2I6RA 1W581 4YJ2A 3ESJA 4B5CA 4LCKA 3U0OA 3P4EA 2QA4F 4O2BB 3KJKA 4BY9D 3VO8A 3Q8HA 1KNKA 3VCZA 1X7OA 3K12A 3JAWB 3J7AR 3NMUC 4I4TB 3UT5A 1JFFA 5ITZA 3CCJF 4BT7A 3VYSC 5HY0A 5GONA 3FD6A 2HS0A 4NUTA 1SA0B 5HXZA 3CCMF 2HX0A 2VXYA 1NMUB 3JATB 3FFMA 4LNUB 3WJRA 2Z1FA 1YGYA 3GHZA 4O2AA 4B46A 5C8YB 5GANK 1W57A 2H8CA 5EB0A 5EIBC 3RYHA 3VYUC 3CCLF 3MCAB 3RYIA 3T80A 4NQ3A 1TUBA 4O4JA 3D54A 3ZP7A 1VQMF 1FNJA 5HWEA 3CCEF 3NK7A 3HKDA 4EB6A 3VI6A 1U40A 1W5BA 5CA0B 1H7MA 3CCVF 5J2TA 3HKEB 2IQQA 4BVQA 3I7TA 3RE3A 5LOVB 1QU9A 1W2BF 2W8BC 4I50B 2ZF8A 3PAFA 2OTJF 4IHJA 2WALA 3CXCF 2ZVZA 3V3TA 3WGJA 2HQSC 1YIJF 5G4VC 1QVGF 4O4JB 3LDTA 2HVYD 3HKBB 2MQEA 3NVIB 3QTYA 2BTOA 4O4HB 3OBWA 4RHAA 5LP6A 3RA6A 1YI2F 3HKDB 2I6DA 4BVSA 4EB6B 4ZI7B 3CMAF 2VAWA 4X1IA 5BMVB 5IYZB 1W59A 2IAFA 2G9IA 3WGKA 4DRXA 2RHLA 2H6LA 2GZLA 3F0GA 4BVTA 1W41A 5LA6B 1ONIA 3IKEA 5FNVA 5LYJA 5HY4A 1U3LA 1RQ2A 3F0DA 3FBAA 1IV2A 5JVDA 3C9TA 2QTPA 3CMEF 4DXDA 4TV9B 2HP0A 3FD5A 4C81A 4C8GA 4TUYB 2OZBA 3N2GA 5HY2A 4ZHYB 4U3JB 3F0EA 3CYPB 4HNAA 4BT6A 3CPWF 2R6R1 2UYPA 3S0WA 2HRYA 3KHNA 3S02A 5KX5B 4G4ZA 4DRXB 1KC8H 3JAKA 3VOBA 5EYPA 1FSZA 5LYJB 1CK2A 4FFBB 1YITF 1JD1A 1FFXB 4BT3A 3CCSF 3CYQA 3QHDA 5EIBD 5KMGA 4EI7A 3ZO8A 3ZP4A 3HTNA 5J2UA 1M1KH 3OW2F 1Q8RA 1UFYA 1GX1A 1VK3A 1JN1A 2GVIA 3JASA 1YJWF 4ZHVA 4TV8A 1YQNA 1YJNF 2OTLF 1DT9A 2R751 2B33A 3IMPA 3G4SF 4R40B 3GYQA 2Z1UA 3C9UA 4TZZA 5JCOC 2LBXA 3HKCB 3RA5A 3NK6A 3JAKB 3L7QA 4X3LA 3WJPA 1W55A 3VYTC 4ZHWA 3E22A 2QI2A 5LXTA 4X1YA 4G4YA 3N2KA 1DBFA 5LP6C 1VQPF 3JARA 4B62A 4WBNB 1RQ7A 3ELCA 1H48A 1GO0A 1PF5A 3S0YA 4X20A 4X1KB 3SIUA 3CPQA 4XCQA 3LWQC 3F6MA 4YJ2B 3WGLA 1M90H 5EO3A 3CG6A 3HWUA 2IG8A 4I55A 3MQWA 2LCAA 3I55F 2RB9A 3LWVC 3E22B 2KTUA 2ZOVA 4O4LA 1H47A 1KQSF 5EZYA 5IJ9A 3UT5B 1XRGA 2BO1A 1JFFB 4BT2A 3RYFA 5ITZB 1IPAA 1X25A 3P10A 2EWCA 5GONB 4BVRA 1VQOF 4X20B 5A2QM 5CA1A 5IT9M 3S0HA 5AVMA 4G88A 1S72F 3G6EF 5EWRA 3JALA 4O2AB 3C9SA 5JCOA 1Q86H 1PXWA 3D00A 4G4WA 3RYHB 4ZHQA 3RYIB 1TUBB 3ZOPA 3C8LA 3VIUA 3SIVA 1OFUA 1J7HA 3BYQA 4ZOLA 2K1SA 1K73H 1IV4A 2PHNA 5CB4A 4G4XA 3G71F 5J2TB 3K0TA 1VQVA 3CC4F 1N8RH 1XHOA 4C82A 2LBTA 2Z01A 3N4ZA 5IJ0A
chains in the Genus database with same CATH topology
2H8EA 1Q8RA 2H8CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H8E A;  1Q8R A;  2H8C A; 
#chains in the Genus database with same CATH topology
 4ERH A;  4IHJ B;  3NVK E;  4O4I A;  5HP7 A;  3M4S A;  1VQ5 F;  3QUW A;  3CB2 A;  3TD3 A;  2UYN A;  1YJ9 F;  1XBI A;  3V7Q A;  1W40 A;  4KWE A;  3HAX D;  5LP6 B;  1XV2 A;  3DC2 A;  2V9Y A;  3JCM M;  4X1I B;  2HP3 A;  5HP8 A;  1Z5W A;  3V7E A;  3ERN A;  4BT4 A;  1VH8 A;  3GTZ A;  5GIP C;  1Q82 H;  3CC7 F;  1T0K B;  5FNV B;  3FPI A;  3LWR C;  5DCV A;  2CZW A;  3ON1 A;  5JVD B;  1CN7 A;  3VOA A;  1W5E A;  3MBM A;  1Z5V A;  2L26 A;  2UYK A;  3KE1 A;  3CD6 F;  5MN4 A;  1U43 A;  2CWJ A;  1NQ3 A;  2HP0 B;  2UYJ A;  2RHO A;  3N2G B;  2VGN A;  5EB1 B;  1IV1 A;  1VQ4 F;  3TD5 A;  4HNA B;  4O2B A;  2DT4 A;  1SZQ A;  1UI9 A;  5FLX M;  3C9R A;  1VQK F;  3J80 M;  3E1Y A;  4RQO A;  2ALE A;  2JNB A;  3J81 M;  3JAW A;  2GLZ A;  1QVF F;  3PLA C;  2OHW A;  5EYP B;  5JH7 A;  3TD4 A;  1QAH A;  2VAP A;  2ZAU A;  3R0P A;  4EI8 A;  2HRU A;  1GZ0 A;  3RYC A;  2YXZ A;  5KMG B;  5GIN C;  1SA0 A;  4M8I A;  5J2U B;  5JQG A;  4IIJ A;  3JAT A;  3V4D A;  2HS3 A;  3IEW A;  4LNU A;  3VMF B;  1W42 A;  5G4U C;  2Q1X A;  3D01 A;  5B8F A;  5C8Y A;  4NWO B;  2BTU A;  1GO1 A;  3JAS B;  4TV8 B;  2P6Y A;  4B45 A;  1K8A H;  2CVL A;  4F6R A;  1TVK A;  2CHT A;  1K9M H;  3LME A;  5JH7 B;  3WJQ A;  5CA0 A;  5LXT B;  1X7P A;  2QEX F;  2N48 A;  4X1Y B;  1W5F A;  2VAM A;  1RLG A;  2NMU A;  2Z1E A;  3N2K B;  3CCQ F;  2CSL A;  3RYC B;  1RA4 A;  3HKE A;  5LOV A;  2H8E A;  3F0F A;  3JAR B;  3E20 B;  5JQG B;  3IEQ A;  4IIJ B;  3EOR A;  4E6E A;  4I50 A;  1JJ2 F;  1U3P A;  1VQ9 F;  5GAP K;  1VQL F;  3WPX A;  3LWP C;  3HKB A;  4F6R B;  2VGM A;  2ZVY A;  5EAZ A;  3OON A;  1TVK B;  4I55 B;  4O4H A;  4C4W C;  5FJ4 C;  1RLU A;  2CW4 A;  4BT5 A;  4ZI7 A;  2HS4 A;  3KIZ A;  3IR9 A;  5BMV A;  4O4L B;  4C8I A;  5IYZ A;  5EZY B;  5IJ9 B;  3I3F A;  3B6N A;  1ODE A;  3RYF B;  2RHJ A;  3JVH A;  4U39 A;  3LYB A;  5LA6 A;  2LBW A;  5MN6 A;  1VQN F;  2KG4 A;  1JY8 A;  3M84 A;  1Q81 H;  2Q1Y A;  3HJW C;  1VQ6 F;  5CA1 B;  2AIF A;  1NJI H;  2ZOD A;  3IKF A;  3LWO C;  1IV3 A;  3JAL B;  4TV9 A;  5HXU A;  1VQ8 F;  4X3M A;  3WGN A;  3WXM B;  4TUY A;  4C8E A;  4U3J A;  5MN5 A;  3CC2 F;  4ZHQ B;  3CCR F;  3P0Z A;  3KJJ A;  3LFO A;  1E7K A;  2FGY A;  4PWT A;  5HY1 A;  2CHS A;  2FC3 A;  2BTQ B;  4ZOL B;  1W5A A;  5KX5 A;  3S03 A;  1Q7Y H;  5CB4 B;  3O85 A;  1T0A A;  1FNK A;  3K14 A;  2F9Z C;  3N4Y A;  4YJ3 A;  4FFB A;  3WGM A;  1FFX A;  1SDS A;  5IJ0 B;  4O4I B;  3VTI C;  1KNJ A;  3OBY A;  2YYE A;  3M1X A;  5GIO C;  1VHA A;  4EI9 A;  3I56 F;  1QD9 A;  2KTV A;  2UYN B;  2RHH A;  3MDO A;  3CCU F;  2UZH A;  3DDN A;  3HKC A;  2PMP A;  1X52 A;  3MCQ A;  1COM A;  3WPW A;  1W3E X;  2AIZ P;  4YJ3 B;  3S06 A;  2Z1T A;  2KGW A;  1OAP A;  1YHQ F;  4I4T A;  1KD1 H;  4WBN A;  4ZK7 A;  3K2X A;  2DYY A;  2AMT A;  1CLI A;  4BW0 B;  1VQ7 F;  4G4V A;  2OTM A;  3AGK A;  3JAM M;  4X1K A;  1ZWZ A;  1R1M A;  2I6R A;  1W58 1;  4YJ2 A;  3ESJ A;  4B5C A;  4LCK A;  3U0O A;  3P4E A;  2QA4 F;  4O2B B;  3KJK A;  4BY9 D;  3VO8 A;  3Q8H A;  1KNK A;  3VCZ A;  1X7O A;  3K12 A;  3JAW B;  3J7A R;  3NMU C;  4I4T B;  3UT5 A;  1JFF A;  5ITZ A;  3CCJ F;  4BT7 A;  3VYS C;  5HY0 A;  5GON A;  3FD6 A;  2HS0 A;  4NUT A;  1SA0 B;  5HXZ A;  3CCM F;  2HX0 A;  2VXY A;  1NMU B;  3JAT B;  3FFM A;  4LNU B;  3WJR A;  2Z1F A;  1YGY A;  3GHZ A;  4O2A A;  4B46 A;  5C8Y B;  5GAN K;  1W57 A;  2H8C A;  5EB0 A;  5EIB C;  3RYH A;  3VYU C;  3CCL F;  3MCA B;  3RYI A;  3T80 A;  4NQ3 A;  1TUB A;  4O4J A;  3D54 A;  3ZP7 A;  1VQM F;  1FNJ A;  5HWE A;  3CCE F;  3NK7 A;  3HKD A;  4EB6 A;  3VI6 A;  1U40 A;  1W5B A;  5CA0 B;  1H7M A;  3CCV F;  5J2T A;  3HKE B;  2IQQ A;  4BVQ A;  3I7T A;  3RE3 A;  5LOV B;  1QU9 A;  1W2B F;  2W8B C;  4I50 B;  2ZF8 A;  3PAF A;  2OTJ F;  4IHJ A;  2WAL A;  3CXC F;  2ZVZ A;  3V3T A;  3WGJ A;  2HQS C;  1YIJ F;  5G4V C;  1QVG F;  4O4J B;  3LDT A;  2HVY D;  3HKB B;  2MQE A;  3NVI B;  3QTY A;  2BTO A;  4O4H B;  3OBW A;  4RHA A;  5LP6 A;  3RA6 A;  1YI2 F;  3HKD B;  2I6D A;  4BVS A;  4EB6 B;  4ZI7 B;  3CMA F;  2VAW A;  4X1I A;  5BMV B;  5IYZ B;  1W59 A;  2IAF A;  2G9I A;  3WGK A;  4DRX A;  2RHL A;  2H6L A;  2GZL A;  3F0G A;  4BVT A;  1W41 A;  5LA6 B;  1ONI A;  3IKE A;  5FNV A;  5LYJ A;  5HY4 A;  1U3L A;  1RQ2 A;  3F0D A;  3FBA A;  1IV2 A;  5JVD A;  3C9T A;  2QTP A;  3CME F;  4DXD A;  4TV9 B;  2HP0 A;  3FD5 A;  4C81 A;  4C8G A;  4TUY B;  2OZB A;  3N2G A;  5HY2 A;  4ZHY B;  4U3J B;  3F0E A;  3CYP B;  4HNA A;  4BT6 A;  3CPW F;  2R6R 1;  2UYP A;  3S0W A;  2HRY A;  3KHN A;  3S02 A;  5KX5 B;  4G4Z A;  4DRX B;  1KC8 H;  3JAK A;  3VOB A;  5EYP A;  1FSZ A;  5LYJ B;  1CK2 A;  4FFB B;  1YIT F;  1JD1 A;  1FFX B;  4BT3 A;  3CCS F;  3CYQ A;  3QHD A;  5EIB D;  5KMG A;  4EI7 A;  3ZO8 A;  3ZP4 A;  3HTN A;  5J2U A;  1M1K H;  3OW2 F;  1Q8R A;  1UFY A;  1GX1 A;  1VK3 A;  1JN1 A;  2GVI A;  3JAS A;  1YJW F;  4ZHV A;  4TV8 A;  1YQN A;  1YJN F;  2OTL F;  1DT9 A;  2R75 1;  2B33 A;  3IMP A;  3G4S F;  4R40 B;  3GYQ A;  2Z1U A;  3C9U A;  4TZZ A;  5JCO C;  2LBX A;  3HKC B;  3RA5 A;  3NK6 A;  3JAK B;  3L7Q A;  4X3L A;  3WJP A;  1W55 A;  3VYT C;  4ZHW A;  3E22 A;  2QI2 A;  5LXT A;  4X1Y A;  4G4Y A;  3N2K A;  1DBF A;  5LP6 C;  1VQP F;  3JAR A;  4B62 A;  4WBN B;  1RQ7 A;  3ELC A;  1H48 A;  1GO0 A;  1PF5 A;  3S0Y A;  4X20 A;  4X1K B;  3SIU A;  3CPQ A;  4XCQ A;  3LWQ C;  3F6M A;  4YJ2 B;  3WGL A;  1M90 H;  5EO3 A;  3CG6 A;  3HWU A;  2IG8 A;  4I55 A;  3MQW A;  2LCA A;  3I55 F;  2RB9 A;  3LWV C;  3E22 B;  2KTU A;  2ZOV A;  4O4L A;  1H47 A;  1KQS F;  5EZY A;  5IJ9 A;  3UT5 B;  1XRG A;  2BO1 A;  1JFF B;  4BT2 A;  3RYF A;  5ITZ B;  1IPA A;  1X25 A;  3P10 A;  2EWC A;  5GON B;  4BVR A;  1VQO F;  4X20 B;  5A2Q M;  5CA1 A;  5IT9 M;  3S0H A;  5AVM A;  4G88 A;  1S72 F;  3G6E F;  5EWR A;  3JAL A;  4O2A B;  3C9S A;  5JCO A;  1Q86 H;  1PXW A;  3D00 A;  4G4W A;  3RYH B;  4ZHQ A;  3RYI B;  1TUB B;  3ZOP A;  3C8L A;  3VIU A;  3SIV A;  1OFU A;  1J7H A;  3BYQ A;  4ZOL A;  2K1S A;  1K73 H;  1IV4 A;  2PHN A;  5CB4 A;  4G4X A;  3G71 F;  5J2T B;  3K0T A;  1VQV A;  3CC4 F;  1N8R H;  1XHO A;  4C82 A;  2LBT A;  2Z01 A;  3N4Z A;  5IJ0 A; 
#chains in the Genus database with same CATH homology
 2H8E A;  1Q8R A;  2H8C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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