The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
120
|
structure length |
120
|
Chain Sequence |
KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study.
pubmed doi rcsb |
| molecule tags |
Isomerase/rna binding protein/rna
|
| source organism |
Pyrococcus furiosus
|
| molecule keywords |
Pseudouridine synthase Cbf5
|
| total genus |
38
|
| structure length |
120
|
| sequence length |
120
|
| ec nomenclature | |
| pdb deposition date | 2010-02-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF01248 | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; |
#chains in the Genus database with same CATH superfamily 3V7E A; 4BW0 B; 5EWR A; 1GO0 A; 3CPQ A; 1NMU B; 1SDS A; 2LBW A; 3NK6 A; 2JNB A; 1Q7Y H; 3J7A R; 1H7M A; 3JAM M; 3CCU F; 1VQO F; 1YIT F; 1YHQ F; 1N8R H; 2OTL F; 1W41 A; 3SIV A; 3LWP C; 2KTU A; 1YI2 F; 1VQ8 F; 1K73 H; 1XBI A; 1GO1 A; 3FFM A; 4BY9 D; 1KC8 H; 2QA4 F; 3CCS F; 3MCA B; 3CME F; 1W3E X; 3O85 A; 2QEX F; 2I6D A; 1JJ2 F; 2ALE A; 1X52 A; 1QVG F; 1CK2 A; 2KG4 A; 1W40 A; 1RA4 A; 2VGM A; 3I56 F; 1NJI H; 1VQK F; 3CC2 F; 3IR9 A; 1KD1 H; 3RA5 A; 3LWO C; 2LBX A; 5GAP K; 3V7Q A; 1Q81 H; 3I55 F; 1X7O A; 3NVK E; 2VGN A; 1YIJ F; 5G4V C; 4C4W C; 2FC3 A; 3J80 M; 1M90 H; 1K8A H; 3VMF B; 1VQ4 F; 2OHW A; 1VQP F; 3JCM M; 3CCJ F; 3CC4 F; 3OW2 F; 3CMA F; 2OZB A; 5G4U C; 3CCM F; 5FLX M; 3G71 F; 2WAL A; 5DCV A; 3CCE F; 1GZ0 A; 5GAN K; 3ON1 A; 1VQL F; 3RA6 A; 3CD6 F; 3N4Z A; 3LWV C; 2AIF A; 3LWR C; 1YJW F; 3CCR F; 3G4S F; 1Q86 H; 3CC7 F; 3CCV F; 2KTV A; 1VQM F; 3VI6 A; 3PAF A; 3J81 M; 3E1Y A; 3CG6 A; 5GIP C; 2OTJ F; 2BO1 A; 2QI2 A; 1Q82 H; 1KQS F; 3PLA C; 3OBW A; 1W42 A; 1DT9 A; 3LFO A; 5GIN C; 1S72 F; 1VQ5 F; 3HJW C; 1PXW A; 1VQN F; 3SIU A; 5FJ4 C; 1IPA A; 3CCL F; 3AGK A; 1QVF F; 1ZWZ A; 1YJN F; 3CPW F; 3NMU C; 1W2B F; 1T0K B; 3CXC F; 1K9M H; 5GIO C; 4X3L A; 3LWQ C; 1YJ9 F; 2HVY D; 3NVI B; 4TZZ A; 1M1K H; 5EO3 A; 1X7P A; 1RLG A; 3CCQ F; 5IT9 M; 4X3M A; 3G6E F; 3HAX D; 3N4Y A; 4NUT A; 2CZW A; 4LCK A; 3NK7 A; 1E7K A; 1VQ6 F; 1VQ9 F; 1VQ7 F; 3WXM B; 1CN7 A; 3GYQ A; 5A2Q M; 3E20 B; 3OBY A; #chains in the Genus database with same CATH topology 4BW0 B; 1FSZ A; 2NMU A; 1JN1 A; 1W5F A; 3JAT A; 3KJJ A; 2LBW A; 5B8F A; 3KE1 A; 2CHS A; 4ZHQ A; 4X1I A; 3WGL A; 2YYE A; 3K2X A; 4RHA A; 1YHQ F; 5CB4 B; 1W5E A; 5IJ0 B; 3WGN A; 4WBN A; 3FFM A; 3D00 A; 4X1Y B; 5JVD A; 2HP3 A; 5IYZ A; 3FD5 A; 3RYF A; 3JAW A; 2CVL A; 1QAH A; 2Z1U A; 1JFF B; 2CW4 A; 2GVI A; 3JAL A; 3CCS F; 3HTN A; 3MCA B; 2CSL A; 4O2B B; 2PHN A; 5EYP A; 2QEX F; 5JQG B; 4ZHY B; 3OON A; 3IR9 A; 3HKE A; 5LXT A; 4F6R A; 3RYH B; 2MQE A; 2HP0 A; 2Z1E A; 3TD3 A; 5HY2 A; 5MN5 A; 4O4H A; 1FNK A; 5JH7 A; 4C4W C; 5LP6 B; 3QTY A; 3J80 M; 3JAR A; 1UI9 A; 4G4Y A; 1COM A; 5ITZ B; 4B62 A; 4HNA A; 3R0P A; 3FBA A; 3WGK A; 4IHJ A; 3CC4 F; 2UYN B; 5HY0 A; 3VO8 A; 5FLX M; 3G71 F; 3JAS A; 3V4D A; 3TD4 A; 3ON1 A; 3V3T A; 5KMG A; 2AIF A; 4YJ2 A; 3JAK B; 4ZOL B; 3G4S F; 3C9R A; 1VQM F; 5LA6 A; 3PAF A; 5EIB D; 5C8Y B; 2OTJ F; 3K14 A; 4LNU A; 3CYP B; 1XHO A; 3E22 A; 1W42 A; 4B46 A; 1IV4 A; 1DT9 A; 5GIN C; 2BTO A; 5BMV A; 2Z01 A; 3CPW F; 4TV9 A; 5HY4 A; 3NMU C; 5J2T A; 3D01 A; 1W2B F; 3CXC F; 3C9S A; 1K9M H; 3P0Z A; 4ZI7 B; 3F6M A; 5CA0 B; 3CYQ A; 4G4V A; 1X7P A; 3TD5 A; 1H47 A; 2CHT A; 3CCQ F; 5IT9 M; 4G88 A; 3B6N A; 3G6E F; 1X25 A; 3S03 A; 2CZW A; 4LCK A; 4RQO A; 2BTU A; 1VQ9 F; 4G4Z A; 3JAT B; 1CN7 A; 3CCV F; 3MBM A; 3V7E A; 3WJR A; 3CPQ A; 3LME A; 2DT4 A; 2UYP A; 3VOA A; 5FNV A; 2IQQ A; 4FFB A; 1J7H A; 2UYJ A; 1VQO F; 1N8R H; 5IYZ B; 3SIV A; 3RYF B; 3HKD A; 1W59 A; 3IEW A; 1XBI A; 5J2U A; 1GO1 A; 4BY9 D; 3ERN A; 4O2A A; 3DDN A; 1U43 A; 2IAF A; 3T80 A; 5MN4 A; 3I7T A; 3O85 A; 4BVR A; 1X52 A; 5LYJ A; 5LXT B; 1SA0 A; 5HXU A; 2UYK A; 2VGM A; 2K1S A; 1QD9 A; 3N2K A; 3CC2 F; 4I4T B; 1KD1 H; 3V7Q A; 2Z1T A; 3JAR B; 4BT7 A; 1W55 A; 4IIJ B; 4PWT A; 2ZF8 A; 4X1K A; 4YJ3 B; 5CA1 B; 3HKC A; 1UFY A; 4C8I A; 4R40 B; 3WJQ A; 3DC2 A; 2H6L A; 4O4I B; 4BVQ A; 4DRX A; 2Q1X A; 5KX5 A; 2OZB A; 3N2G A; 5G4U C; 3JVH A; 3LDT A; 4O4L B; 3CCE F; 3RE3 A; 3CD6 F; 3N4Z A; 5LA6 B; 3CCR F; 3M1X A; 4C8G A; 1R1M A; 5EIB C; 3CC7 F; 3ZP4 A; 2OTM A; 5LOV B; 4U3J B; 1W5A A; 3S0Y A; 3WPW A; 5EZY A; 1DBF A; 1Q82 H; 3PLA C; 1TUB B; 3RYC A; 1RQ7 A; 3HWU A; 1SZQ A; 4I50 A; 4X20 A; 4BT2 A; 3C9U A; 4TV9 B; 5HP8 A; 5HP7 A; 1IPA A; 1TVK A; 4EB6 A; 1VK3 A; 1H48 A; 1QVF F; 3F0F A; 3I3F A; 3IMP A; 1VHA A; 2UZH A; 4NWO B; 1IV1 A; 3LWQ C; 1KNK A; 4TZZ A; 5CB4 A; 3IEQ A; 5AVM A; 5IJ0 A; 1M1K H; 4X3M A; 5HY1 A; 2HS3 A; 2HQS C; 2VXY A; 4X1Y A; 2GLZ A; 1FFX A; 4BT6 A; 1VQ7 F; 3QHD A; 3WXM B; 2ZOV A; 4G4W A; 4FFB B; 4C8E A; 2PMP A; 3M4S A; 3UT5 A; 1JFF A; 5EWR A; 2I6R A; 3WJP A; 2ZOD A; 1SDS A; 2RB9 A; 1FNJ A; 3NK6 A; 4EI9 A; 5IJ9 B; 3J7A R; 4O2B A; 3QUW A; 1H7M A; 1IV3 A; 2VAM A; 5JQG A; 4BT5 A; 1W41 A; 4I55 B; 3LWP C; 3F0E A; 2KTU A; 1VQ8 F; 4O4J B; 3VTI C; 1K73 H; 1QU9 A; 1Q8R A; 5LP6 C; 4TUY A; 1VH8 A; 3F0D A; 2R75 1; 1VQV A; 4B5C A; 5LP6 A; 3HKB A; 5LYJ B; 3VIU A; 5ITZ A; 4ZHQ B; 2P6Y A; 3N2K B; 4X1I B; 3VYT C; 2ALE A; 3CB2 A; 4ZK7 A; 4C82 A; 1CK2 A; 1YGY A; 2KG4 A; 1W40 A; 2UYN A; 4DXD A; 3I56 F; 1NJI H; 1VQK F; 2HS4 A; 1OFU A; 4WBN B; 5JVD B; 3LWO C; 4E6E A; 5GAP K; 3JAW B; 1ONI A; 1X7O A; 4BVT A; 4ZOL A; 3P4E A; 4C81 A; 1T0A A; 3JAL B; 3ELC A; 2LCA A; 5HXZ A; 5C8Y A; 5EYP B; 2OHW A; 2B33 A; 3RYI A; 3CCJ F; 3VYU C; 3CMA F; 2L26 A; 2R6R 1; 1XRG A; 2N48 A; 3CCM F; 3HKE B; 4F6R B; 2HP0 B; 5GAN K; 3KJK A; 3VYS C; 1VQL F; 3LWV C; 1YJW F; 3KHN A; 4O4H B; 2RHH A; 1Q86 H; 5JH7 B; 1RQ2 A; 2IG8 A; 3L7Q A; 3IKE A; 3J81 M; 5CA0 A; 3CG6 A; 4I50 B; 3WGJ A; 2QTP A; 4BT4 A; 5GIP C; 4HNA B; 2BTQ B; 2BO1 A; 3S02 A; 3IKF A; 3ZO8 A; 1KQS F; 4IHJ B; 4EB6 B; 3OBW A; 4BVS A; 3LFO A; 2HS0 A; 3HJW C; 2GZL A; 1PXW A; 3JAS B; 1VQN F; 2Q1Y A; 2RHO A; 3CCL F; 5FJ4 C; 5KMG B; 2H8C A; 3AGK A; 4YJ2 B; 2HRU A; 1YJN F; 1T0K B; 3VOB A; 4ZHW A; 5GIO C; 1W58 1; 1JD1 A; 2AIZ P; 5EO3 A; 1FFX B; 1RLG A; 4LNU B; 4TV8 A; 3E22 B; 5GON A; 2AMT A; 3UT5 B; 4ZHV A; 3NK7 A; 3MDO A; 5JCO C; 3GYQ A; 5BMV B; 3E20 B; 3OBY A; 2H8E A; 5A2Q M; 3U0O A; 1GO0 A; 1NMU B; 5JCO A; 1W57 A; 5J2T B; 3ZOP A; 2YXZ A; 5EB0 A; 2JNB A; 1Q7Y H; 1U3L A; 3JAM M; 1YIT F; 3WGM A; 3CCU F; 2OTL F; 4TUY B; 2F9Z C; 1YI2 F; 1XV2 A; 4I4T A; 1YQN A; 3MQW A; 3C9T A; 4KWE A; 3HKB B; 3M84 A; 1W5B A; 2ZVY A; 1KC8 H; 2QA4 F; 3LYB A; 3GHZ A; 3FPI A; 4IIJ A; 3BYQ A; 3D54 A; 1GX1 A; 3MCQ A; 4YJ3 A; 5FNV B; 5CA1 A; 1IV2 A; 3CME F; 1W3E X; 2I6D A; 3S0H A; 1JJ2 F; 3S06 A; 2FGY A; 3K12 A; 4O4I A; 1QVG F; 3HKD B; 3C8L A; 1RA4 A; 2RHJ A; 5J2U B; 4NQ3 A; 1KNJ A; 1U3P A; 4O4L A; 3RA5 A; 3P10 A; 2LBX A; 1Q81 H; 1ODE A; 3I55 F; 4O2A B; 3NVK E; 2V9Y A; 4G4X A; 2VGN A; 1YIJ F; 5G4V C; 4B45 A; 3RYH A; 2FC3 A; 5LOV A; 3GTZ A; 1M90 H; 3RYI B; 1K8A H; 4U3J A; 5MN6 A; 3VMF B; 2ZAU A; 2HRY A; 4BT3 A; 4ERH A; 1VQ4 F; 1VQP F; 2ZVZ A; 3JCM M; 3EOR A; 1TUB A; 1Z5V A; 1SA0 B; 3K0T A; 3OW2 F; 4XCQ A; 2CWJ A; 3F0G A; 1NQ3 A; 4EI8 A; 3ZP7 A; 5DCV A; 1GZ0 A; 3RA6 A; 3LWR C; 5EAZ A; 1JY8 A; 3ESJ A; 2VAP A; 3FD6 A; 4U39 A; 1CLI A; 2KTV A; 3VI6 A; 3JAK A; 4X1K B; 3VCZ A; 3HKC B; 3E1Y A; 2RHL A; 2EWC A; 5EB1 B; 2QI2 A; 4DRX B; 1PF5 A; 2G9I A; 5KX5 B; 3N2G B; 4M8I A; 3Q8H A; 1VQ5 F; 1S72 F; 2VAW A; 2LBT A; 1OAP A; 1RLU A; 3SIU A; 3KIZ A; 1ZWZ A; 4EI7 A; 1Z5W A; 3S0W A; 4TV8 B; 4X3L A; 3WPX A; 5IJ9 A; 5GON B; 1YJ9 F; 2HVY D; 3NVI B; 5HWE A; 2HX0 A; 4I55 A; 5EZY B; 4O4J A; 3RYC B; 4ZI7 A; 3HAX D; 3N4Y A; 4NUT A; 2DYY A; 2KGW A; 4X20 B; 1E7K A; 2W8B C; 2Z1F A; 1VQ6 F; 1TVK B; 2WAL A; 1U40 A; #chains in the Genus database with same CATH homology 3V7E A; 4BW0 B; 5EWR A; 1GO0 A; 3CPQ A; 1NMU B; 1SDS A; 2LBW A; 4EI9 A; 3NK6 A; 2JNB A; 1Q7Y H; 3J7A R; 1H7M A; 3JAM M; 3CCU F; 1VQO F; 1YIT F; 1YHQ F; 1N8R H; 2OTL F; 1W41 A; 3SIV A; 2F9Z C; 3LWP C; 2KTU A; 1YI2 F; 1VQ8 F; 1K73 H; 1XBI A; 1GO1 A; 3FFM A; 3D00 A; 4BY9 D; 1KC8 H; 2QA4 F; 3CCS F; 3MCA B; 3CME F; 1W3E X; 3O85 A; 2QEX F; 2I6D A; 1JJ2 F; 4BVR A; 2FGY A; 2ALE A; 1X52 A; 1QVG F; 5HXU A; 1CK2 A; 2KG4 A; 1W40 A; 1RA4 A; 2VGM A; 3I56 F; 1NJI H; 1VQK F; 3CC2 F; 4NQ3 A; 3IR9 A; 1KD1 H; 3RA5 A; 3LWO C; 2LBX A; 5GAP K; 3V7Q A; 1Q81 H; 5HY2 A; 3I55 F; 1X7O A; 3NVK E; 4BVT A; 2VGN A; 1YIJ F; 5G4V C; 4C4W C; 2FC3 A; 3J80 M; 1M90 H; 1K8A H; 3VMF B; 5HXZ A; 1VQ4 F; 2OHW A; 1VQP F; 3JCM M; 4BVQ A; 3CCJ F; 3CC4 F; 3OW2 F; 3CMA F; 2OZB A; 4XCQ A; 5G4U C; 5HY0 A; 3CCM F; 5FLX M; 3G71 F; 4EI8 A; 2WAL A; 5DCV A; 3CCE F; 1GZ0 A; 3V3T A; 5GAN K; 3ON1 A; 1VQL F; 3RA6 A; 3CD6 F; 3N4Z A; 3LWV C; 2AIF A; 3LWR C; 1YJW F; 3CCR F; 3G4S F; 1Q86 H; 3CC7 F; 3CCV F; 2KTV A; 1VQM F; 3VI6 A; 3PAF A; 3J81 M; 3E1Y A; 3CG6 A; 5GIP C; 2OTJ F; 2BO1 A; 2QI2 A; 1Q82 H; 1KQS F; 3PLA C; 3OBW A; 1W42 A; 4BVS A; 1DT9 A; 3LFO A; 5GIN C; 1S72 F; 1VQ5 F; 3HJW C; 1PXW A; 1VQN F; 3SIU A; 5FJ4 C; 1IPA A; 3CCL F; 3AGK A; 1QVF F; 1ZWZ A; 1YJN F; 4EI7 A; 3CPW F; 5HY4 A; 3NMU C; 1W2B F; 1T0K B; 3CXC F; 1K9M H; 5GIO C; 4X3L A; 3LWQ C; 1YJ9 F; 2HVY D; 3NVI B; 5HWE A; 4TZZ A; 1M1K H; 5EO3 A; 1X7P A; 1RLG A; 3CCQ F; 5IT9 M; 4X3M A; 3G6E F; 3HAX D; 5HY1 A; 3N4Y A; 4NUT A; 2CZW A; 4LCK A; 2GLZ A; 3NK7 A; 1E7K A; 1VQ6 F; 1VQ9 F; 1VQ7 F; 3WXM B; 1CN7 A; 3GYQ A; 5A2Q M; 3E20 B; 3OBY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
