The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
94
|
sequence length |
338
|
structure length |
312
|
Chain Sequence |
MRILEEDLKNSTYRIRIESLDDLWYLRNILSEGDEVSAITFERERIPITIRLKVEKIEFQDFDNRLRILGKGKHQSITVTVDSEISITKEWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYYSEASYFDQIVNALKNYSNSIIILGPGFARDRFARYCAQRGVNVIGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKDMGVYGRDQTESALQMGALSDLIITDEMFRTEDGRRSLSIAQTVGTRIHIVSVSNDPGQIVKKFGGFAGILRYRV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and functional insights into dom34, a key component of no-go mRNA decay
pubmed doi rcsb |
| molecule tags |
Cell cycle
|
| source organism |
Thermoplasma acidophilum
|
| molecule keywords |
Cell division protein pelota related protein
|
| total genus |
94
|
| structure length |
312
|
| sequence length |
338
|
| ec nomenclature | |
| pdb deposition date | 2007-07-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03463 | eRF1_1 | eRF1 domain 1 |
| A | PF03465 | eRF1_3 | eRF1 domain 3 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | SH3 type barrels. | SH3 type barrels. | ||
| Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase; domain 5 | Nucleotidyltransferase; domain 5 | ||
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; |
