2DT4A

Crystal structure of pyrococcus horikoshii a plant- and prokaryote-conserved (ppc) protein at 1.60 resolution
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
143
structure length
143
Chain Sequence
MVTGMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQELKGEKIERKPTKYGLALWEELKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein PH0802
publication title Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 A resolution
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 27
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2006-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03479 DUF296 Plants and Prokaryotes Conserved (PCC) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.80 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 2dt4A00
2P6YA 4BT7A 4BT5A 3HWUA 4BT6A 2DT4A 4BT2A 4BT3A 3HTNA 4BT4A 1XV2A 2NMUA 2H6LA 2HX0A
chains in the Genus database with same CATH superfamily
1OAPA 3LDTA 4DRXB 5LXTA 3JARB 1W5BA 2ZODA 3B6NA 3CMAF 4X3MA 1ZWZA 4IIJA 1QAHA 2IQQA 5ITZA 3VO8A 3ZO8A 2Z1EA 3ERNA 1JFFA 3CCSF 3C9SA 4I50A 3VTIC 5G4UC 4B46A 3N2KB 3M1XA 3KHNA 2KG4A 5KX5A 1X52A 1VQ4F 2Z1TA 1W581 3DDNA 4X1KA 5LP6C 1RA4A 2EWCA 4IHJB 4X20B 3IMPA 3C9TA 2LBWA 3CCQF 4NWOB 3ELCA 3M4SA 1N8RH 1NMUB 5LXTB 2RB9A 2R751 2W8BC 4U39A 1VQVA 4X1IB 4IIJB 4BT3A 5ITZB 1UI9A 2GZLA 4HNAB 3HAXD 1KC8H 3FD5A 5HXZA 1J7HA 5EO3A 3JASA 1W3EX 3F6MA 5LYJB 5KX5B 4O4HA 1YIJF 4YJ3A 3N4ZA 1U3LA 4RQOA 1K9MH 2AIFA 2LBTA 3CCEF 4NQ3A 4X1KB 1YJNF 4ZK7A 5IYZB 4F6RA 3UT5A 3F0GA 4O2BA 5GINC 3CCMF 3ESJA 3VYSC 3CYQA 3HKEA 1PXWA 1VQ7F 3FPIA 3IKEA 3HJWC 1FSZA 2ZVYA 2VAMA 4C4WC 1JJ2F 2DT4A 2RHLA 2CVLA 5GIOC 2F9ZC 3F0EA 3S0WA 3U0OA 3VYUC 4ZHYB 3VYTC 1M1KH 3HKDB 4ZOLA 4O4LA 4YJ3B 1PF5A 2KTUA 2UYNA 2QI2A 4BT2A 1QD9A 3NVIB 1IV4A 2B33A 3CCVF 4G4VA 4EB6A 5EYPA 2BTOA 3CG6A 1KQSF 4F6RB 3UT5B 4O2BB 3KE1A 5DCVA 3RA6A 4BVSA 2AIZP 2CSLA 3HKEB 3P4EA 2UYJA 3M84A 1T0AA 2ZOVA 1Q8RA 3P0ZA 4EI9A 1S72F 2Q1YA 2QEXF 2PMPA 3KIZA 5EWRA 3IR9A 1U3PA 3J7AR 4KWEA 3LWQC 1XRGA 3CD6F 2VXYA 2HVYD 2ZVZA 3C9UA 1KNJA 4I55A 4ZOLB 2UYNB 3ON1A 5FLXM 2YXZA 2NMUA 3IEWA 2ZAUA 4EB6B 5EYPB 4YJ2A 2CW4A 4ERHA 2OTJF 2Z01A 4M8IA 3CPWF 2UYPA 3I7TA 2ALEA 2HP0A 1CLIA 4TZZA 3CCUF 4X1IA 3JAWB 1QU9A 4HNAA 1CN7A 3ZP4A 3RA5A 2H8EA 3LWOC 3F0DA 2Z1UA 2GVIA 3SIUA 5G4VC 1FFXA 1W42A 3WXMB 3WJRA 3T80A 5LYJA 3I55F 3GYQA 3VIUA 1YITF 3G6EF 5LOVA 4I55B 3PLAC 4LCKA 3RYHB 1SZQA 1W5AA 3NK7A 1Q82H 5IYZA 3N4YA 1IV1A 3K12A 4YJ2B 3OW2F 1Q7YH 3WPWA 4X3LA 5C8YA 3KJJA 3WGLA 3HWUA 3LMEA 5CB4B 2HP0B 3CXCF 1VQ6F 3SIVA 1U43A 1X7PA 2JNBA 5HY2A 5EZYA 2CZWA 4ZHVA 5FJ4C 3LFOA 1ONIA 1VQMF 2I6RA 3TD4A 4ZI7A 5GANK 2OZBA 2LCAA 5GAPK 4C82A 1FFXB 3LWPC 4U3JA 3HKDA 3WJPA 3O85A 1VQOF 1U40A 5JQGA 5LOVB 1Z5VA 5J2UA 5EIBC 3C8LA 3LWVC 3HTNA 4G4WA 1E7KA 5GONA 4G88A 4G4YA 5C8YB 1COMA 2R6R1 1TVKB 2RHJA 3LWRC 4C8EA 2OTLF 4BW0B 3LYBA 1VQ8F 3PAFA 5EZYB 5HY1A 4PWTA 3OONA 3L7QA 3CC7F 4ZI7B 1W41A 5HP8A 4C81A 4BVTA 1NJIH 3I3FA 5MN6A 4U3JB 3IEQA 3V4DA 3S02A 3TD5A 5IJ9B 3G4SF 5AVMA 2KTVA 3WGNA 3FBAA 3MQWA 5JQGB 3QTYA 4LNUA 5J2UB 2RHHA 1FNJA 5GONB 1VQKF 1R1MA 3JAWA 5HXUA 4B5CA 1W5FA 3RE3A 3HKBA 3FD6A 4TV9A 2I6DA 1X25A 2V9YA 1VQPF 2BTUA 3JVHA 3VMFB 3R0PA 4X1YA 1W2BF 1IV2A 3I56F 3GTZA 5B8FA 1QVFF 4FFBA 3S0HA 2BO1A 4B62A 4BT5A 2KGWA 5HY4A 3P10A 3RYHA 3TD3A 1VQLF 3BYQA 3NMUC 1YQNA 1H7MA 2HS0A 4LNUB 4I4TA 5HY0A 3D00A 1JD1A 1DBFA 4ZHWA 1VQ9F 5CB4A 5IJ0B 3IKFA 4G4ZA 3WGJA 1ODEA 2GLZA 5FNVA 2CWJA 5BMVA 2HQSC 5CA1A 3CCLF 3HKBB 4TV9B 3K2XA 3JAMM 2VAWA 4X1YB 4WBNA 1FNKA 2CHTA 1CK2A 4BVRA 1TUBB 1JY8A 2VGNA 4FFBB 4O4IA 1M90H 1H48A 3RYCA 2HRUA 3VI6A 3CC4F 4BVQA 5CA0A 5IT9M 3D01A 3MDOA 3VOBA 4C8GA 4XCQA 4ZHQA 5EIBD 1RQ7A 3F0FA 4EI7A 3J81M 4I4TB 3WJQA 5JCOC 1IPAA 2HS3A 3FFMA 3JALB 3CCRF 1TVKA 2LBXA 3NK6A 3E22A 4TV8A 2OTMA 3CC2F 2OHWA 1GO1A 5FNVB 2WALA 3V7QA 5BMVB 5CA1B 1H47A 1QVGF 1Q81H 3E1YA 3CB2A 5EB0A 1KD1H 3WGMA 3HKCA 5JVDA 1NQ3A 4WBNB 1SA0A 1RLUA 1K8AH 5IJ9A 3G71F 5MN5A 3JAKA 4O4IB 3CPQA 1W59A 2DYYA 3RYCB 2MQEA 1GO0A 3GHZA 5CA0B 2IG8A 3DC2A 3E20B 4BT7A 3VCZA 1K73H 4ZHQB 3N2GA 4TUYA 1KNKA 2HRYA 5JCOA 2ZF8A 3J80M 1JFFB 2Q1XA 4NUTA 4I50B 2IAFA 2AMTA 2CHSA 3VOAA 3QUWA 3E22B 4TV8B 3ZOPA 1YI2F 4BY9D 1GX1A 5GIPC 2FGYA 3C9RA 3V7EA 2QTPA 5KMGA 2YYEA 1JN1A 3RYIA 3WGKA 4E6EA 2UZHA 5LP6A 2PHNA 3HKCB 3MBMA 1UFYA 3CYPB 1VK3A 5EAZA 5JVDB 5J2TA 1SA0B 1Q86H 3OBWA 3S06A 3JAKB 1Z5WA 2VAPA 3QHDA 3JATA 3S0YA 3CMEF 4O2AA 3RYFA 3V3TA 3N2GB 1VHAA 4TUYB 1VH8A 2UYKA 4C8IA 1GZ0A 3EORA 5JH7A 3WPXA 2BTQB 5HWEA 5IJ0A 1VQNF 1YJWF 2HS4A 2HP3A 2H8CA 2RHOA 4DXDA 1W55A 1X7OA 1SDSA 1OFUA 2VGMA 2FC3A 3JASB 5MN4A 4O4HB 2Z1FA 5KMGB 1W40A 5LA6A 3Q8HA 5A2QM 1RLGA 3RYIB 2K1SA 4EI8A 5LP6B 4O4JA 2G9IA 1TUBA 1W5EA 3MCQA 3ZP7A 4G4XA 4DRXA 3JARA 5J2TB 2P6YA 3S03A 4BT6A 3NVKE 5EB1B 1XHOA 3K14A 1XV2A 3JATB 3CCJF 4O2AB 3K0TA 1IV3A 1YJ9F 3RYFB 1YHQF 1VQ5F 3JCMM 2H6LA 2HX0A 1XBIA 3OBYA 3JALA 4B45A 5JH7B 3N2KA 4RHAA 1T0KB 3AGKA 2QA4F 4BT4A 1YGYA 1RQ2A 4R40B 3D54A 3MCAB 1DT9A 2N48A 4O4LB 5LA6B 2L26A 4IHJA 5HP7A 4O4JB 4X20A 1W57A 3KJKA
chains in the Genus database with same CATH topology
2P6YA 4BT7A 4BT5A 3HWUA 4BT6A 2DT4A 4BT2A 4BT3A 3HTNA 4BT4A 1XV2A 2NMUA 2H6LA 2HX0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6Y A;  4BT7 A;  4BT5 A;  3HWU A;  4BT6 A;  2DT4 A;  4BT2 A;  4BT3 A;  3HTN A;  4BT4 A;  1XV2 A;  2NMU A;  2H6L A;  2HX0 A; 
#chains in the Genus database with same CATH topology
 1OAP A;  3LDT A;  4DRX B;  5LXT A;  3JAR B;  1W5B A;  2ZOD A;  3B6N A;  3CMA F;  4X3M A;  1ZWZ A;  4IIJ A;  1QAH A;  2IQQ A;  5ITZ A;  3VO8 A;  3ZO8 A;  2Z1E A;  3ERN A;  1JFF A;  3CCS F;  3C9S A;  4I50 A;  3VTI C;  5G4U C;  4B46 A;  3N2K B;  3M1X A;  3KHN A;  2KG4 A;  5KX5 A;  1X52 A;  1VQ4 F;  2Z1T A;  1W58 1;  3DDN A;  4X1K A;  5LP6 C;  1RA4 A;  2EWC A;  4IHJ B;  4X20 B;  3IMP A;  3C9T A;  2LBW A;  3CCQ F;  4NWO B;  3ELC A;  3M4S A;  1N8R H;  1NMU B;  5LXT B;  2RB9 A;  2R75 1;  2W8B C;  4U39 A;  1VQV A;  4X1I B;  4IIJ B;  4BT3 A;  5ITZ B;  1UI9 A;  2GZL A;  4HNA B;  3HAX D;  1KC8 H;  3FD5 A;  5HXZ A;  1J7H A;  5EO3 A;  3JAS A;  1W3E X;  3F6M A;  5LYJ B;  5KX5 B;  4O4H A;  1YIJ F;  4YJ3 A;  3N4Z A;  1U3L A;  4RQO A;  1K9M H;  2AIF A;  2LBT A;  3CCE F;  4NQ3 A;  4X1K B;  1YJN F;  4ZK7 A;  5IYZ B;  4F6R A;  3UT5 A;  3F0G A;  4O2B A;  5GIN C;  3CCM F;  3ESJ A;  3VYS C;  3CYQ A;  3HKE A;  1PXW A;  1VQ7 F;  3FPI A;  3IKE A;  3HJW C;  1FSZ A;  2ZVY A;  2VAM A;  4C4W C;  1JJ2 F;  2DT4 A;  2RHL A;  2CVL A;  5GIO C;  2F9Z C;  3F0E A;  3S0W A;  3U0O A;  3VYU C;  4ZHY B;  3VYT C;  1M1K H;  3HKD B;  4ZOL A;  4O4L A;  4YJ3 B;  1PF5 A;  2KTU A;  2UYN A;  2QI2 A;  4BT2 A;  1QD9 A;  3NVI B;  1IV4 A;  2B33 A;  3CCV F;  4G4V A;  4EB6 A;  5EYP A;  2BTO A;  3CG6 A;  1KQS F;  4F6R B;  3UT5 B;  4O2B B;  3KE1 A;  5DCV A;  3RA6 A;  4BVS A;  2AIZ P;  2CSL A;  3HKE B;  3P4E A;  2UYJ A;  3M84 A;  1T0A A;  2ZOV A;  1Q8R A;  3P0Z A;  4EI9 A;  1S72 F;  2Q1Y A;  2QEX F;  2PMP A;  3KIZ A;  5EWR A;  3IR9 A;  1U3P A;  3J7A R;  4KWE A;  3LWQ C;  1XRG A;  3CD6 F;  2VXY A;  2HVY D;  2ZVZ A;  3C9U A;  1KNJ A;  4I55 A;  4ZOL B;  2UYN B;  3ON1 A;  5FLX M;  2YXZ A;  2NMU A;  3IEW A;  2ZAU A;  4EB6 B;  5EYP B;  4YJ2 A;  2CW4 A;  4ERH A;  2OTJ F;  2Z01 A;  4M8I A;  3CPW F;  2UYP A;  3I7T A;  2ALE A;  2HP0 A;  1CLI A;  4TZZ A;  3CCU F;  4X1I A;  3JAW B;  1QU9 A;  4HNA A;  1CN7 A;  3ZP4 A;  3RA5 A;  2H8E A;  3LWO C;  3F0D A;  2Z1U A;  2GVI A;  3SIU A;  5G4V C;  1FFX A;  1W42 A;  3WXM B;  3WJR A;  3T80 A;  5LYJ A;  3I55 F;  3GYQ A;  3VIU A;  1YIT F;  3G6E F;  5LOV A;  4I55 B;  3PLA C;  4LCK A;  3RYH B;  1SZQ A;  1W5A A;  3NK7 A;  1Q82 H;  5IYZ A;  3N4Y A;  1IV1 A;  3K12 A;  4YJ2 B;  3OW2 F;  1Q7Y H;  3WPW A;  4X3L A;  5C8Y A;  3KJJ A;  3WGL A;  3HWU A;  3LME A;  5CB4 B;  2HP0 B;  3CXC F;  1VQ6 F;  3SIV A;  1U43 A;  1X7P A;  2JNB A;  5HY2 A;  5EZY A;  2CZW A;  4ZHV A;  5FJ4 C;  3LFO A;  1ONI A;  1VQM F;  2I6R A;  3TD4 A;  4ZI7 A;  5GAN K;  2OZB A;  2LCA A;  5GAP K;  4C82 A;  1FFX B;  3LWP C;  4U3J A;  3HKD A;  3WJP A;  3O85 A;  1VQO F;  1U40 A;  5JQG A;  5LOV B;  1Z5V A;  5J2U A;  5EIB C;  3C8L A;  3LWV C;  3HTN A;  4G4W A;  1E7K A;  5GON A;  4G88 A;  4G4Y A;  5C8Y B;  1COM A;  2R6R 1;  1TVK B;  2RHJ A;  3LWR C;  4C8E A;  2OTL F;  4BW0 B;  3LYB A;  1VQ8 F;  3PAF A;  5EZY B;  5HY1 A;  4PWT A;  3OON A;  3L7Q A;  3CC7 F;  4ZI7 B;  1W41 A;  5HP8 A;  4C81 A;  4BVT A;  1NJI H;  3I3F A;  5MN6 A;  4U3J B;  3IEQ A;  3V4D A;  3S02 A;  3TD5 A;  5IJ9 B;  3G4S F;  5AVM A;  2KTV A;  3WGN A;  3FBA A;  3MQW A;  5JQG B;  3QTY A;  4LNU A;  5J2U B;  2RHH A;  1FNJ A;  5GON B;  1VQK F;  1R1M A;  3JAW A;  5HXU A;  4B5C A;  1W5F A;  3RE3 A;  3HKB A;  3FD6 A;  4TV9 A;  2I6D A;  1X25 A;  2V9Y A;  1VQP F;  2BTU A;  3JVH A;  3VMF B;  3R0P A;  4X1Y A;  1W2B F;  1IV2 A;  3I56 F;  3GTZ A;  5B8F A;  1QVF F;  4FFB A;  3S0H A;  2BO1 A;  4B62 A;  4BT5 A;  2KGW A;  5HY4 A;  3P10 A;  3RYH A;  3TD3 A;  1VQL F;  3BYQ A;  3NMU C;  1YQN A;  1H7M A;  2HS0 A;  4LNU B;  4I4T A;  5HY0 A;  3D00 A;  1JD1 A;  1DBF A;  4ZHW A;  1VQ9 F;  5CB4 A;  5IJ0 B;  3IKF A;  4G4Z A;  3WGJ A;  1ODE A;  2GLZ A;  5FNV A;  2CWJ A;  5BMV A;  2HQS C;  5CA1 A;  3CCL F;  3HKB B;  4TV9 B;  3K2X A;  3JAM M;  2VAW A;  4X1Y B;  4WBN A;  1FNK A;  2CHT A;  1CK2 A;  4BVR A;  1TUB B;  1JY8 A;  2VGN A;  4FFB B;  4O4I A;  1M90 H;  1H48 A;  3RYC A;  2HRU A;  3VI6 A;  3CC4 F;  4BVQ A;  5CA0 A;  5IT9 M;  3D01 A;  3MDO A;  3VOB A;  4C8G A;  4XCQ A;  4ZHQ A;  5EIB D;  1RQ7 A;  3F0F A;  4EI7 A;  3J81 M;  4I4T B;  3WJQ A;  5JCO C;  1IPA A;  2HS3 A;  3FFM A;  3JAL B;  3CCR F;  1TVK A;  2LBX A;  3NK6 A;  3E22 A;  4TV8 A;  2OTM A;  3CC2 F;  2OHW A;  1GO1 A;  5FNV B;  2WAL A;  3V7Q A;  5BMV B;  5CA1 B;  1H47 A;  1QVG F;  1Q81 H;  3E1Y A;  3CB2 A;  5EB0 A;  1KD1 H;  3WGM A;  3HKC A;  5JVD A;  1NQ3 A;  4WBN B;  1SA0 A;  1RLU A;  1K8A H;  5IJ9 A;  3G71 F;  5MN5 A;  3JAK A;  4O4I B;  3CPQ A;  1W59 A;  2DYY A;  3RYC B;  2MQE A;  1GO0 A;  3GHZ A;  5CA0 B;  2IG8 A;  3DC2 A;  3E20 B;  4BT7 A;  3VCZ A;  1K73 H;  4ZHQ B;  3N2G A;  4TUY A;  1KNK A;  2HRY A;  5JCO A;  2ZF8 A;  3J80 M;  1JFF B;  2Q1X A;  4NUT A;  4I50 B;  2IAF A;  2AMT A;  2CHS A;  3VOA A;  3QUW A;  3E22 B;  4TV8 B;  3ZOP A;  1YI2 F;  4BY9 D;  1GX1 A;  5GIP C;  2FGY A;  3C9R A;  3V7E A;  2QTP A;  5KMG A;  2YYE A;  1JN1 A;  3RYI A;  3WGK A;  4E6E A;  2UZH A;  5LP6 A;  2PHN A;  3HKC B;  3MBM A;  1UFY A;  3CYP B;  1VK3 A;  5EAZ A;  5JVD B;  5J2T A;  1SA0 B;  1Q86 H;  3OBW A;  3S06 A;  3JAK B;  1Z5W A;  2VAP A;  3QHD A;  3JAT A;  3S0Y A;  3CME F;  4O2A A;  3RYF A;  3V3T A;  3N2G B;  1VHA A;  4TUY B;  1VH8 A;  2UYK A;  4C8I A;  1GZ0 A;  3EOR A;  5JH7 A;  3WPX A;  2BTQ B;  5HWE A;  5IJ0 A;  1VQN F;  1YJW F;  2HS4 A;  2HP3 A;  2H8C A;  2RHO A;  4DXD A;  1W55 A;  1X7O A;  1SDS A;  1OFU A;  2VGM A;  2FC3 A;  3JAS B;  5MN4 A;  4O4H B;  2Z1F A;  5KMG B;  1W40 A;  5LA6 A;  3Q8H A;  5A2Q M;  1RLG A;  3RYI B;  2K1S A;  4EI8 A;  5LP6 B;  4O4J A;  2G9I A;  1TUB A;  1W5E A;  3MCQ A;  3ZP7 A;  4G4X A;  4DRX A;  3JAR A;  5J2T B;  2P6Y A;  3S03 A;  4BT6 A;  3NVK E;  5EB1 B;  1XHO A;  3K14 A;  1XV2 A;  3JAT B;  3CCJ F;  4O2A B;  3K0T A;  1IV3 A;  1YJ9 F;  3RYF B;  1YHQ F;  1VQ5 F;  3JCM M;  2H6L A;  2HX0 A;  1XBI A;  3OBY A;  3JAL A;  4B45 A;  5JH7 B;  3N2K A;  4RHA A;  1T0K B;  3AGK A;  2QA4 F;  4BT4 A;  1YGY A;  1RQ2 A;  4R40 B;  3D54 A;  3MCA B;  1DT9 A;  2N48 A;  4O4L B;  5LA6 B;  2L26 A;  4IHJ A;  5HP7 A;  4O4J B;  4X20 A;  1W57 A;  3KJK A; 
#chains in the Genus database with same CATH homology
 2P6Y A;  4BT7 A;  4BT5 A;  3HWU A;  4BT6 A;  2DT4 A;  4BT2 A;  4BT3 A;  3HTN A;  4BT4 A;  1XV2 A;  2NMU A;  2H6L A;  2HX0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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