2QTPA

Crystal structure of a duf1185 family protein (spo0826) from silicibacter pomeroyi dss-3 at 2.10 a resolution
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
169
structure length
147
Chain Sequence
KIRKIAVFIEETRIEAGREISPPTRKAVAVAVIENPFAGRYVEDLTELMDTGAELGALLGERCVQALGIRPEQAESYGKSAMVGENGELEHAAAILHPKLLVPSSKKMGSPGQVLDVPLGHFDGIEVRLNDAPRANEIMVAVAVTDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized protein
publication title Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
pubmed doi rcsb
source organism Silicibacter pomeroyi dss-3
total genus 33
structure length 147
sequence length 169
ec nomenclature
pdb deposition date 2007-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06684 AA_synth Amino acid synthesis
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.110 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; BB2672 2qtpA00
3BYQA 2QTPA
chains in the Genus database with same CATH superfamily
1QU9A 2YYEA 1QAHA 3N2KB 3I55F 2ZAUA 1W5BA 3ERNA 4YJ2B 3CD6F 2H6LA 2KTUA 5HY0A 1U43A 4TUYA 1K8AH 1TVKA 2CZWA 2B33A 2UYNB 4ZOLA 4EI9A 4O2BA 2CSLA 4I55B 1T0KB 5IJ0A 1W2BF 2LBTA 1RLUA 4NWOB 4ZHQA 3RA5A 3F0DA 3HJWC 3M84A 2HS0A 3M4SA 4G4ZA 2UZHA 3DC2A 5FNVB 5G4UC 3E1YA 1GX1A 4O4JB 3VOAA 4KWEA 3HKEB 2RHLA 4O2AB 5CB4A 3V3TA 4WBNA 5HY2A 1X7OA 1VQ4F 2VGNA 2IQQA 2AIFA 3JARA 1KD1H 5LOVA 3JASB 3F0FA 3HKBB 3KJJA 5EZYB 3CMAF 2CW4A 1PXWA 5J2TA 4TUYB 4O4HA 1TVKB 4EI7A 3HTNA 3MCQA 4ZOLB 3K2XA 3KJKA 4O2BB 4C8GA 1SDSA 5IJ9A 5IJ0B 3BYQA 1ODEA 1TUBB 1XRGA 2PHNA 2L26A 1VQMF 2HRUA 1GO0A 1RLGA 3B6NA 2IAFA 4IIJB 1UFYA 3MCAB 5CB4B 3JVHA 4WBNB 3KIZA 3S03A 3QTYA 4U39A 5HY4A 4EI8A 1W40A 3IKFA 3LMEA 4ZI7B 2BTQB 1VQ7F 1CLIA 4C82A 3JATA 1Z5VA 5ITZA 2ZODA 1Q8RA 5J2TB 4BY9D 4O4HB 3HAXD 3LFOA 1GO1A 3FPIA 2GLZA 5LXTB 1YI2F 5IJ9B 2GVIA 5GAPK 3P10A 2HP3A 1ONIA 1H47A 1CK2A 2Z1FA 2FC3A 2Z01A 2VAWA 3FFMA 4EB6A 3WPWA 5EIBD 3IKEA 1COMA 5KX5A 4YJ3A 5LA6A 3JCMM 1W57A 3LWQC 2BTOA 3QUWA 4C4WC 4I50A 2FGYA 2LBXA 1J7HA 5EWRA 4F6RA 1VQ6F 3N2GA 3I3FA 5GANK 3TD5A 1SA0B 2F9ZC 1X52A 2CHSA 3HWUA 4X1IB 5J2UA 3L7QA 3WXMB 4E6EA 1VQ8F 3CCMF 2HP0B 5A2QM 1JFFA 3D01A 4BT2A 3NK6A 3KE1A 1VK3A 4BW0B 2V9YA 2ZVYA 3ELCA 3VYTC 5KX5B 5C8YA 4YJ3B 3S02A 1QD9A 1RQ7A 2I6DA 5LA6B 3CCQF 3LWOC 2Q1YA 4HNAB 1H48A 1H7MA 2QA4F 3I56F 3CC7F 1VHAA 1VH8A 1ZWZA 3LWPC 4F6RB 3PAFA 4BVQA 5JCOC 3IEQA 5EB0A 5EYPA 5GIPC 5CA0B 2LBWA 3VIUA 3V4DA 5GIOC 1Q86H 2KGWA 1SZQA 2AMTA 4LCKA 1Q7YH 3VI6A 5JQGB 2JNBA 3Q8HA 2OTLF 4DRXB 1NJIH 1IV4A 5MN4A 1JD1A 2Z1TA 1FSZA 4BT3A 4ZHYB 3G71F 3IMPA 3MBMA 5FLXM 1OFUA 1XHOA 1W5EA 2RB9A 2QEXF 2HVYD 2ZOVA 5BMVA 4BT7A 4BVSA 3JALB 2OHWA 3ZO8A 5EO3A 1W55A 2HS4A 3C9RA 3P0ZA 3CCVF 4ZK7A 3CXCF 1VQNF 3U0OA 2PMPA 4B46A 3IR9A 3WGKA 4ZHQB 3DDNA 4C81A 3WJQA 5MN6A 1W3EX 2YXZA 4B45A 4BT5A 1KNJA 3VOBA 5HWEA 5GONA 2UYPA 3HKCA 3RYFA 3CC2F 5JCOA 1XBIA 1X25A 5DCVA 5FJ4C 1CN7A 1U3LA 3RE3A 3S06A 3JARB 5LOVB 3LWVC 2W8BC 5EIBC 3TD3A 4IHJA 3JAWA 3TD4A 1IPAA 1GZ0A 1PF5A 3RYHA 3AGKA 4BT4A 4BT6A 4DXDA 1R1MA 4TV9A 3WGJA 4X1YA 3V7QA 5IYZA 2Z1UA 1YJWF 2UYJA 5B8FA 1VQLF 5LYJA 4NQ3A 4LNUA 3CYPB 3UT5A 5GINC 1W5FA 3RA6A 2N48A 4X3LA 3E22A 5HP8A 2RHOA 3GYQA 3S0WA 4C8EA 4X20A 5EAZA 3PLAC 3JATB 5EB1B 5ITZB 4RQOA 3JAWB 3D00A 3GHZA 2IG8A 2AIZP 5HXUA 2HQSC 5LP6C 1E7KA 4U3JA 1NQ3A 3WGLA 3K0TA 3CCJF 1VQVA 1FNJA 4EB6B 3WGNA 3FD6A 1VQKF 3N4YA 3VYSC 1YJ9F 5HY1A 3N2KA 1W41A 4X3MA 1JY8A 1K9MH 2DT4A 3E20B 4G4XA 4I50B 4ZHVA 5JH7A 3JAMM 3RYCA 1YIJF 2UYNA 1RA4A 4X20B 1VQOF 3N2GB 3MQWA 4I55A 1KNKA 3C9SA 3P4EA 3OONA 3J80M 3CCRF 3VMFB 3K12A 3NK7A 5J2UB 5HXZA 4FFBA 2LCAA 2ALEA 1FFXA 3RYIA 4BVRA 5IT9M 4U3JB 3M1XA 1JFFB 3HKEA 3SIVA 3VO8A 3GTZA 3QHDA 2P6YA 1M90H 5AVMA 1K73H 5C8YB 1Z5WA 4ZHWA 2CWJA 3LYBA 3NMUC 3ZOPA 1UI9A 3HKBA 4PWTA 5EZYA 5JH7B 3CCUF 2HRYA 3F0GA 3RYCB 3CB2A 5LP6A 3ON1A 5G4VC 4TZZA 3CCEF 5EYPB 1TUBA 4ERHA 2ZF8A 3CYQA 3JAKA 2KG4A 3LDTA 4FFBB 1FFXB 3RYIB 3WPXA 3CC4F 2H8EA 3CPQA 3WJRA 3VCZA 3LWRC 1VQ5F 4G88A 4IIJA 1JN1A 3IEWA 2ZVZA 1YQNA 4ZI7A 2Q1XA 3CCLF 2QTPA 3OW2F 5CA1A 3OBWA 1VQ9F 1S72F 3VYUC 3S0HA 3G4SF 4M8IA 2CVLA 3K14A 4BVTA 3VTIC 5BMVB 1QVGF 1N8RH 4B5CA 4O4LA 5LP6B 5LXTA 2R751 3FD5A 2VAPA 3JAKB 3O85A 1RQ2A 4G4YA 4TV8A 3ZP7A 1YHQF 3ESJA 5KMGA 2KTVA 1KQSF 3R0PA 4X1KA 1YJNF 1KC8H 2MQEA 3C8LA 2OTMA 3V7EA 2VXYA 5GONB 1W42A 5CA1B 3HKCB 3RYFB 1W5AA 1DBFA 1SA0A 3ZP4A 3F0EA 2VAMA 3I7TA 4X1IA 1X7PA 4O4LB 2I6RA 2BO1A 1M1KH 4G4WA 3MDOA 3WJPA 4I4TA 4O4IA 4C8IA 2HP0A 1U3PA 2G9IA 3G6EF 2RHHA 2Z1EA 3D54A 4IHJB 2UYKA 3WGMA 5JVDA 1JJ2F 1U40A 2RHJA 3RYHB 3J7AR 5MN5A 1IV2A 2OTJF 2K1SA 2QI2A 4TV9B 1VQPF 4X1YB 4TV8B 5IYZB 3HKDA 3C9UA 2R6R1 2HS3A 5KMGB 3CCSF 3FBAA 4HNAA 1IV3A 3CG6A 4R40B 2BTUA 4X1KB 5LYJB 2H8CA 1W581 2DYYA 1Q82H 4LNUB 3UT5B 4XCQA 1YGYA 1DT9A 3F6MA 3KHNA 1Q81H 2WALA 3E22B 4YJ2A 5CA0A 2GZLA 3J81M 2VGMA 1FNKA 3CPWF 1IV1A 2CHTA 4I4TB 4O4IB 4B62A 3N4ZA 2NMUA 1OAPA 5JQGA 5JVDB 2OZBA 3S0YA 1YITF 3C9TA 4RHAA 4DRXA 2EWCA 3NVIB 3T80A 3NVKE 3EORA 5FNVA 1XV2A 1T0AA 3HKDB 4O4JA 1QVFF 3OBYA 2HX0A 4O2AA 1NMUB 5HP7A 4NUTA 4G4VA 1W59A 3CMEF 3SIUA 3JALA 3JASA
chains in the Genus database with same CATH topology
3BYQA 2QTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BYQ A;  2QTP A; 
#chains in the Genus database with same CATH topology
 1QU9 A;  2YYE A;  1QAH A;  3N2K B;  3I55 F;  2ZAU A;  1W5B A;  3ERN A;  4YJ2 B;  3CD6 F;  2H6L A;  2KTU A;  5HY0 A;  1U43 A;  4TUY A;  1K8A H;  1TVK A;  2CZW A;  2B33 A;  2UYN B;  4ZOL A;  4EI9 A;  4O2B A;  2CSL A;  4I55 B;  1T0K B;  5IJ0 A;  1W2B F;  2LBT A;  1RLU A;  4NWO B;  4ZHQ A;  3RA5 A;  3F0D A;  3HJW C;  3M84 A;  2HS0 A;  3M4S A;  4G4Z A;  2UZH A;  3DC2 A;  5FNV B;  5G4U C;  3E1Y A;  1GX1 A;  4O4J B;  3VOA A;  4KWE A;  3HKE B;  2RHL A;  4O2A B;  5CB4 A;  3V3T A;  4WBN A;  5HY2 A;  1X7O A;  1VQ4 F;  2VGN A;  2IQQ A;  2AIF A;  3JAR A;  1KD1 H;  5LOV A;  3JAS B;  3F0F A;  3HKB B;  3KJJ A;  5EZY B;  3CMA F;  2CW4 A;  1PXW A;  5J2T A;  4TUY B;  4O4H A;  1TVK B;  4EI7 A;  3HTN A;  3MCQ A;  4ZOL B;  3K2X A;  3KJK A;  4O2B B;  4C8G A;  1SDS A;  5IJ9 A;  5IJ0 B;  3BYQ A;  1ODE A;  1TUB B;  1XRG A;  2PHN A;  2L26 A;  1VQM F;  2HRU A;  1GO0 A;  1RLG A;  3B6N A;  2IAF A;  4IIJ B;  1UFY A;  3MCA B;  5CB4 B;  3JVH A;  4WBN B;  3KIZ A;  3S03 A;  3QTY A;  4U39 A;  5HY4 A;  4EI8 A;  1W40 A;  3IKF A;  3LME A;  4ZI7 B;  2BTQ B;  1VQ7 F;  1CLI A;  4C82 A;  3JAT A;  1Z5V A;  5ITZ A;  2ZOD A;  1Q8R A;  5J2T B;  4BY9 D;  4O4H B;  3HAX D;  3LFO A;  1GO1 A;  3FPI A;  2GLZ A;  5LXT B;  1YI2 F;  5IJ9 B;  2GVI A;  5GAP K;  3P10 A;  2HP3 A;  1ONI A;  1H47 A;  1CK2 A;  2Z1F A;  2FC3 A;  2Z01 A;  2VAW A;  3FFM A;  4EB6 A;  3WPW A;  5EIB D;  3IKE A;  1COM A;  5KX5 A;  4YJ3 A;  5LA6 A;  3JCM M;  1W57 A;  3LWQ C;  2BTO A;  3QUW A;  4C4W C;  4I50 A;  2FGY A;  2LBX A;  1J7H A;  5EWR A;  4F6R A;  1VQ6 F;  3N2G A;  3I3F A;  5GAN K;  3TD5 A;  1SA0 B;  2F9Z C;  1X52 A;  2CHS A;  3HWU A;  4X1I B;  5J2U A;  3L7Q A;  3WXM B;  4E6E A;  1VQ8 F;  3CCM F;  2HP0 B;  5A2Q M;  1JFF A;  3D01 A;  4BT2 A;  3NK6 A;  3KE1 A;  1VK3 A;  4BW0 B;  2V9Y A;  2ZVY A;  3ELC A;  3VYT C;  5KX5 B;  5C8Y A;  4YJ3 B;  3S02 A;  1QD9 A;  1RQ7 A;  2I6D A;  5LA6 B;  3CCQ F;  3LWO C;  2Q1Y A;  4HNA B;  1H48 A;  1H7M A;  2QA4 F;  3I56 F;  3CC7 F;  1VHA A;  1VH8 A;  1ZWZ A;  3LWP C;  4F6R B;  3PAF A;  4BVQ A;  5JCO C;  3IEQ A;  5EB0 A;  5EYP A;  5GIP C;  5CA0 B;  2LBW A;  3VIU A;  3V4D A;  5GIO C;  1Q86 H;  2KGW A;  1SZQ A;  2AMT A;  4LCK A;  1Q7Y H;  3VI6 A;  5JQG B;  2JNB A;  3Q8H A;  2OTL F;  4DRX B;  1NJI H;  1IV4 A;  5MN4 A;  1JD1 A;  2Z1T A;  1FSZ A;  4BT3 A;  4ZHY B;  3G71 F;  3IMP A;  3MBM A;  5FLX M;  1OFU A;  1XHO A;  1W5E A;  2RB9 A;  2QEX F;  2HVY D;  2ZOV A;  5BMV A;  4BT7 A;  4BVS A;  3JAL B;  2OHW A;  3ZO8 A;  5EO3 A;  1W55 A;  2HS4 A;  3C9R A;  3P0Z A;  3CCV F;  4ZK7 A;  3CXC F;  1VQN F;  3U0O A;  2PMP A;  4B46 A;  3IR9 A;  3WGK A;  4ZHQ B;  3DDN A;  4C81 A;  3WJQ A;  5MN6 A;  1W3E X;  2YXZ A;  4B45 A;  4BT5 A;  1KNJ A;  3VOB A;  5HWE A;  5GON A;  2UYP A;  3HKC A;  3RYF A;  3CC2 F;  5JCO A;  1XBI A;  1X25 A;  5DCV A;  5FJ4 C;  1CN7 A;  1U3L A;  3RE3 A;  3S06 A;  3JAR B;  5LOV B;  3LWV C;  2W8B C;  5EIB C;  3TD3 A;  4IHJ A;  3JAW A;  3TD4 A;  1IPA A;  1GZ0 A;  1PF5 A;  3RYH A;  3AGK A;  4BT4 A;  4BT6 A;  4DXD A;  1R1M A;  4TV9 A;  3WGJ A;  4X1Y A;  3V7Q A;  5IYZ A;  2Z1U A;  1YJW F;  2UYJ A;  5B8F A;  1VQL F;  5LYJ A;  4NQ3 A;  4LNU A;  3CYP B;  3UT5 A;  5GIN C;  1W5F A;  3RA6 A;  2N48 A;  4X3L A;  3E22 A;  5HP8 A;  2RHO A;  3GYQ A;  3S0W A;  4C8E A;  4X20 A;  5EAZ A;  3PLA C;  3JAT B;  5EB1 B;  5ITZ B;  4RQO A;  3JAW B;  3D00 A;  3GHZ A;  2IG8 A;  2AIZ P;  5HXU A;  2HQS C;  5LP6 C;  1E7K A;  4U3J A;  1NQ3 A;  3WGL A;  3K0T A;  3CCJ F;  1VQV A;  1FNJ A;  4EB6 B;  3WGN A;  3FD6 A;  1VQK F;  3N4Y A;  3VYS C;  1YJ9 F;  5HY1 A;  3N2K A;  1W41 A;  4X3M A;  1JY8 A;  1K9M H;  2DT4 A;  3E20 B;  4G4X A;  4I50 B;  4ZHV A;  5JH7 A;  3JAM M;  3RYC A;  1YIJ F;  2UYN A;  1RA4 A;  4X20 B;  1VQO F;  3N2G B;  3MQW A;  4I55 A;  1KNK A;  3C9S A;  3P4E A;  3OON A;  3J80 M;  3CCR F;  3VMF B;  3K12 A;  3NK7 A;  5J2U B;  5HXZ A;  4FFB A;  2LCA A;  2ALE A;  1FFX A;  3RYI A;  4BVR A;  5IT9 M;  4U3J B;  3M1X A;  1JFF B;  3HKE A;  3SIV A;  3VO8 A;  3GTZ A;  3QHD A;  2P6Y A;  1M90 H;  5AVM A;  1K73 H;  5C8Y B;  1Z5W A;  4ZHW A;  2CWJ A;  3LYB A;  3NMU C;  3ZOP A;  1UI9 A;  3HKB A;  4PWT A;  5EZY A;  5JH7 B;  3CCU F;  2HRY A;  3F0G A;  3RYC B;  3CB2 A;  5LP6 A;  3ON1 A;  5G4V C;  4TZZ A;  3CCE F;  5EYP B;  1TUB A;  4ERH A;  2ZF8 A;  3CYQ A;  3JAK A;  2KG4 A;  3LDT A;  4FFB B;  1FFX B;  3RYI B;  3WPX A;  3CC4 F;  2H8E A;  3CPQ A;  3WJR A;  3VCZ A;  3LWR C;  1VQ5 F;  4G88 A;  4IIJ A;  1JN1 A;  3IEW A;  2ZVZ A;  1YQN A;  4ZI7 A;  2Q1X A;  3CCL F;  2QTP A;  3OW2 F;  5CA1 A;  3OBW A;  1VQ9 F;  1S72 F;  3VYU C;  3S0H A;  3G4S F;  4M8I A;  2CVL A;  3K14 A;  4BVT A;  3VTI C;  5BMV B;  1QVG F;  1N8R H;  4B5C A;  4O4L A;  5LP6 B;  5LXT A;  2R75 1;  3FD5 A;  2VAP A;  3JAK B;  3O85 A;  1RQ2 A;  4G4Y A;  4TV8 A;  3ZP7 A;  1YHQ F;  3ESJ A;  5KMG A;  2KTV A;  1KQS F;  3R0P A;  4X1K A;  1YJN F;  1KC8 H;  2MQE A;  3C8L A;  2OTM A;  3V7E A;  2VXY A;  5GON B;  1W42 A;  5CA1 B;  3HKC B;  3RYF B;  1W5A A;  1DBF A;  1SA0 A;  3ZP4 A;  3F0E A;  2VAM A;  3I7T A;  4X1I A;  1X7P A;  4O4L B;  2I6R A;  2BO1 A;  1M1K H;  4G4W A;  3MDO A;  3WJP A;  4I4T A;  4O4I A;  4C8I A;  2HP0 A;  1U3P A;  2G9I A;  3G6E F;  2RHH A;  2Z1E A;  3D54 A;  4IHJ B;  2UYK A;  3WGM A;  5JVD A;  1JJ2 F;  1U40 A;  2RHJ A;  3RYH B;  3J7A R;  5MN5 A;  1IV2 A;  2OTJ F;  2K1S A;  2QI2 A;  4TV9 B;  1VQP F;  4X1Y B;  4TV8 B;  5IYZ B;  3HKD A;  3C9U A;  2R6R 1;  2HS3 A;  5KMG B;  3CCS F;  3FBA A;  4HNA A;  1IV3 A;  3CG6 A;  4R40 B;  2BTU A;  4X1K B;  5LYJ B;  2H8C A;  1W58 1;  2DYY A;  1Q82 H;  4LNU B;  3UT5 B;  4XCQ A;  1YGY A;  1DT9 A;  3F6M A;  3KHN A;  1Q81 H;  2WAL A;  3E22 B;  4YJ2 A;  5CA0 A;  2GZL A;  3J81 M;  2VGM A;  1FNK A;  3CPW F;  1IV1 A;  2CHT A;  4I4T B;  4O4I B;  4B62 A;  3N4Z A;  2NMU A;  1OAP A;  5JQG A;  5JVD B;  2OZB A;  3S0Y A;  1YIT F;  3C9T A;  4RHA A;  4DRX A;  2EWC A;  3NVI B;  3T80 A;  3NVK E;  3EOR A;  5FNV A;  1XV2 A;  1T0A A;  3HKD B;  4O4J A;  1QVF F;  3OBY A;  2HX0 A;  4O2A A;  1NMU B;  5HP7 A;  4NUT A;  4G4V A;  1W59 A;  3CME F;  3SIU A;  3JAL A;  3JAS A; 
#chains in the Genus database with same CATH homology
 3BYQ A;  2QTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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