3BYQA

Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 a resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
191
structure length
191
Chain Sequence
b'SLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPREILFALVMGTGARVHARLGGLTKEAVSVHDGQR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein DUF1185
molecule tags Unknown function
source organism Bordetella bronchiseptica rb50
publication title Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
pubmed doi rcsb
total genus 47
structure length 191
sequence length 191
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06684 AA_synth Amino acid synthesis
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.110 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; BB2672 3byqA00
3BYQA 2QTPA
chains in the Genus database with same CATH superfamily
3RA5A 4O2AA 3CXCF 3K2XA 4BT6A 3LMEA 4FFBA 1YHQF 4G4WA 2RHLA 3RYIB 5A2QM 2ZOVA 1SDSA 1CLIA 1H7MA 3WGMA 5LXTA 3D54A 5JVDA 1VQ7F 1QD9A 4BVRA 1RLUA 1DBFA 5IYZB 1ODEA 3D01A 1OFUA 1T0KB 5MN5A 3LWPC 5HXZA 3RYFA 3RYFB 3VYTC 4BVQA 4O2BB 3S0WA 1KC8H 5LOVA 5MN6A 1YGYA 3E20B 4C8GA 5LYJB 3HJWC 2HRYA 5LYJA 2K1SA 1S72F 2CW4A 3V3TA 3F0GA 3E1YA 3VYUC 4HNAA 4YJ2B 3FD6A 1QAHA 4X1KA 3QHDA 2GZLA 2HS3A 3FFMA 3CMEF 1JFFB 1Q82H 5JH7A 3HKBB 3VYSC 3CYQA 5B8FA 4X20A 4B45A 4ZHVA 2AIZP 3JASA 4E6EA 1YJ9F 3HKCB 3JASB 5FJ4C 5LP6C 3HKEA 2RHHA 3V7QA 3WJRA 3HKDB 3HKDA 2VAWA 3WGNA 2DYYA 1H47A 3JALB 3JAWA 3QTYA 3JALA 4C4WC 5CA0B 2PHNA 3ZO8A 1Q8RA 3CC7F 4EB6A 4U39A 4IIJA 4O2AB 3RYCA 1QVFF 2EWCA 1DT9A 2HVYD 1VQ9F 4G4ZA 3I55F 3N2KB 2AIFA 3WPXA 4BT5A 3VOAA 5CB4B 3C9SA 3NMUC 1NMUB 1PXWA 4ZI7A 1W5FA 5GINC 1SA0A 5EWRA 2W8BC 3MDOA 3CPQA 3UT5B 1W2BF 4O4HB 3T80A 4EI8A 2I6DA 2KTVA 3G71F 4O4LA 1NJIH 2LBXA 2OHWA 3O85A 2UZHA 3V4DA 2DT4A 2RB9A 2RHOA 4X1IB 2ZVYA 2N48A 1QVGF 2OTLF 2Z1EA 4O2BA 4ZOLA 3WGLA 4BW0B 2Q1YA 1GZ0A 3DDNA 1FNKA 5CA1B 2IAFA 2RHJA 3S0YA 3JAKA 2HP3A 1X7PA 2HP0A 2Z1UA 1R1MA 5HWEA 2R751 3AGKA 1YITF 5GIPC 3LWVC 4NWOB 2F9ZC 3RA6A 1W5BA 2CWJA 1XBIA 3KHNA 2UYKA 2QA4F 4I55A 5IJ9B 1TUBB 3NVKE 1TUBA 4YJ3B 1RA4A 1IV4A 5JQGA 1X7OA 1X25A 3QUWA 5HP7A 3BYQA 3CD6F 3WGKA 2ZAUA 4U3JA 4TUYB 4ERHA 4NUTA 3GHZA 3IKEA 3EORA 3S0HA 3ELCA 3HAXD 1Q7YH 2IQQA 5FNVB 3CCSF 3IEQA 2ALEA 3RYCB 4HNAB 1W42A 2HRUA 3CCEF 3P4EA 2UYNA 2Z1TA 3N4ZA 4RHAA 4TV9B 5J2UB 1FNJA 3M4SA 3C8LA 5FLXM 5GIOC 4X1YB 2IG8A 3CCUF 3HKEB 3I7TA 3NK7A 3N4YA 1Z5WA 5EB1B 3ON1A 5JCOC 1K73H 1SZQA 3S06A 1VQNF 5AVMA 1JN1A 2H8CA 3P0ZA 1XV2A 5EAZA 1IPAA 4O4IB 4ZHWA 1VQMF 5GONA 3LDTA 5LP6B 3K12A 3RYIA 1J7HA 1W5EA 3G6EF 5KMGB 2UYJA 3ERNA 4TZZA 4EB6B 3JCMM 4IHJB 3OONA 4I55B 5EYPB 3F6MA 5IYZA 4EI9A 1W3EX 3HWUA 3CCMF 3OBWA 3JATB 1QU9A 2QI2A 5LXTB 3MCAB 3FD5A 3CC4F 1COMA 1JD1A 2UYPA 2Z1FA 2ZODA 1Z5VA 4TV8B 5EB0A 2PMPA 2BO1A 1UI9A 2FC3A 2KGWA 5HP8A 4ZHYB 2KTUA 3F0DA 3M1XA 3L7QA 1Q86H 2FGYA 2Q1XA 4DRXB 3U0OA 4DRXA 1KNJA 4WBNB 5IJ9A 5JH7B 2OTMA 3VI6A 1E7KA 5JCOA 1VQVA 5JQGB 4X3LA 3WJQA 5MN4A 1RLGA 5EIBC 1ZWZA 2YXZA 2VAMA 1JJ2F 2VAPA 3WJPA 3KE1A 3K14A 3VO8A 3KJJA 4ZHQB 1TVKA 3K0TA 4O4JA 4LCKA 4O4JB 4C8EA 3ESJA 3C9UA 3MQWA 4FFBB 4R40B 5J2TB 4NQ3A 3Q8HA 5KMGA 4X3MA 5FNVA 4G4VA 3LWOC 1W5AA 1OAPA 2VXYA 4O4HA 5IJ0B 3KIZA 1YJWF 3LFOA 4PWTA 1Q81H 1W41A 4TV9A 5J2UA 1JY8A 1W55A 1H48A 4BT3A 3TD5A 1W57A 2CVLA 3I56F 3SIVA 2Z01A 3VMFB 4TV8A 1VQOF 1IV1A 5LA6A 1VK3A 4O4IA 5KX5A 5LP6A 2WALA 2QEXF 1RQ7A 3VIUA 3JAWB 1CN7A 4X1KB 2P6YA 3CCQF 4G4XA 4BY9D 3NK6A 4WBNA 3G4SF 1VQ4F 4B5CA 4KWEA 4YJ3A 2LBWA 4X20B 1M1KH 3J7AR 3CCVF 1W581 1YI2F 3JARA 4B46A 4ZI7B 3JARB 5G4VC 1KNKA 5EYPA 3FPIA 4O4LB 5IT9M 3JATA 1FFXA 1IV2A 4BVTA 5LOVB 1U43A 2LCAA 4F6RB 2KG4A 3RYHB 5HY0A 3CPWF 1KQSF 3RYHA 3IEWA 5EIBD 4DXDA 1YQNA 5J2TA 2AMTA 5HY1A 3ZOPA 1GO0A 3P10A 2OZBA 3MCQA 3LWQC 1VQLF 5HY2A 1VQ5F 5G4UC 4X1YA 1IV3A 1FSZA 1JFFA 3F0FA 3TD3A 4B62A 4LNUB 4LNUA 5HY4A 4I4TA 2R6R1 1VQPF 3TD4A 3C9RA 2VGMA 3B6NA 2BTUA 1TVKB 3R0PA 5GONB 3VCZA 3PAFA 3LWRC 1CK2A 3GTZA 1ONIA 5GAPK 3JVHA 1K8AH 3N2KA 5CB4A 4ZHQA 2CHTA 3VOBA 5JVDB 4C8IA 3E22A 2HQSC 3SIUA 3UT5A 3GYQA 3J80M 2QTPA 5GANK 3FBAA 4EI7A 3CCLF 2UYNB 4G88A 1U40A 3ZP7A 3CYPB 1W40A 2YYEA 3VTIC 3OBYA 1U3LA 1UFYA 5BMVB 1VQ8F 4IHJA 5BMVA 4U3JB 1SA0B 4TUYA 2LBTA 5IJ0A 1RQ2A 2ZF8A 3J81M 4X1IA 3IMPA 1FFXB 2GLZA 4F6RA 5CA1A 1GX1A 1T0AA 3S02A 3V7EA 3IR9A 2VGNA 2HP0B 3KJKA 5LA6B 2OTJF 1NQ3A 5EO3A 1VQ6F 1VQKF 3N2GB 2CSLA 3N2GA 1M90H 2BTOA 1N8RH 5HXUA 3MBMA 3M84A 4YJ2A 4C81A 2HS4A 2CZWA 2L26A 2ZVZA 3C9TA 3HKCA 4BT2A 1W59A 2V9YA 2GVIA 2HS0A 3HKBA 2H8EA 4I4TB 4XCQA 3CG6A 3CCRF 4RQOA 3D00A 2H6LA 4BVSA 3ZP4A 2B33A 4IIJB 3S03A 1X52A 1K9MH 4G4YA 3WGJA 2CHSA 1KD1H 3E22B 3CMAF 3NVIB 1PF5A 4I50B 3OW2F 1VH8A 4I50A 3CB2A 3CC2F 1VHAA 2JNBA 3IKFA 3HTNA 5EZYA 3F0EA 4C82A 5EZYB 4ZK7A 5ITZA 2MQEA 5ITZB 4ZOLB 4BT4A 3RE3A 1U3PA 2I6RA 2NMUA 2BTQB 3PLAC 3LYBA 1GO1A 1XRGA 5C8YA 5C8YB 3WXMB 3DC2A 1YJNF 5KX5B 5DCVA 3WPWA 3CCJF 1XHOA 3JAKB 5CA0A 2HX0A 4M8IA 4BT7A 1YIJF 3JAMM 2G9IA 3I3FA
chains in the Genus database with same CATH topology
3BYQA 2QTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BYQ A;  2QTP A; 
#chains in the Genus database with same CATH topology
 3RA5 A;  4O2A A;  3CXC F;  3K2X A;  4BT6 A;  3LME A;  4FFB A;  1YHQ F;  4G4W A;  2RHL A;  3RYI B;  5A2Q M;  2ZOV A;  1SDS A;  1CLI A;  1H7M A;  3WGM A;  5LXT A;  3D54 A;  5JVD A;  1VQ7 F;  1QD9 A;  4BVR A;  1RLU A;  1DBF A;  5IYZ B;  1ODE A;  3D01 A;  1OFU A;  1T0K B;  5MN5 A;  3LWP C;  5HXZ A;  3RYF A;  3RYF B;  3VYT C;  4BVQ A;  4O2B B;  3S0W A;  1KC8 H;  5LOV A;  5MN6 A;  1YGY A;  3E20 B;  4C8G A;  5LYJ B;  3HJW C;  2HRY A;  5LYJ A;  2K1S A;  1S72 F;  2CW4 A;  3V3T A;  3F0G A;  3E1Y A;  3VYU C;  4HNA A;  4YJ2 B;  3FD6 A;  1QAH A;  4X1K A;  3QHD A;  2GZL A;  2HS3 A;  3FFM A;  3CME F;  1JFF B;  1Q82 H;  5JH7 A;  3HKB B;  3VYS C;  3CYQ A;  5B8F A;  4X20 A;  4B45 A;  4ZHV A;  2AIZ P;  3JAS A;  4E6E A;  1YJ9 F;  3HKC B;  3JAS B;  5FJ4 C;  5LP6 C;  3HKE A;  2RHH A;  3V7Q A;  3WJR A;  3HKD B;  3HKD A;  2VAW A;  3WGN A;  2DYY A;  1H47 A;  3JAL B;  3JAW A;  3QTY A;  3JAL A;  4C4W C;  5CA0 B;  2PHN A;  3ZO8 A;  1Q8R A;  3CC7 F;  4EB6 A;  4U39 A;  4IIJ A;  4O2A B;  3RYC A;  1QVF F;  2EWC A;  1DT9 A;  2HVY D;  1VQ9 F;  4G4Z A;  3I55 F;  3N2K B;  2AIF A;  3WPX A;  4BT5 A;  3VOA A;  5CB4 B;  3C9S A;  3NMU C;  1NMU B;  1PXW A;  4ZI7 A;  1W5F A;  5GIN C;  1SA0 A;  5EWR A;  2W8B C;  3MDO A;  3CPQ A;  3UT5 B;  1W2B F;  4O4H B;  3T80 A;  4EI8 A;  2I6D A;  2KTV A;  3G71 F;  4O4L A;  1NJI H;  2LBX A;  2OHW A;  3O85 A;  2UZH A;  3V4D A;  2DT4 A;  2RB9 A;  2RHO A;  4X1I B;  2ZVY A;  2N48 A;  1QVG F;  2OTL F;  2Z1E A;  4O2B A;  4ZOL A;  3WGL A;  4BW0 B;  2Q1Y A;  1GZ0 A;  3DDN A;  1FNK A;  5CA1 B;  2IAF A;  2RHJ A;  3S0Y A;  3JAK A;  2HP3 A;  1X7P A;  2HP0 A;  2Z1U A;  1R1M A;  5HWE A;  2R75 1;  3AGK A;  1YIT F;  5GIP C;  3LWV C;  4NWO B;  2F9Z C;  3RA6 A;  1W5B A;  2CWJ A;  1XBI A;  3KHN A;  2UYK A;  2QA4 F;  4I55 A;  5IJ9 B;  1TUB B;  3NVK E;  1TUB A;  4YJ3 B;  1RA4 A;  1IV4 A;  5JQG A;  1X7O A;  1X25 A;  3QUW A;  5HP7 A;  3BYQ A;  3CD6 F;  3WGK A;  2ZAU A;  4U3J A;  4TUY B;  4ERH A;  4NUT A;  3GHZ A;  3IKE A;  3EOR A;  3S0H A;  3ELC A;  3HAX D;  1Q7Y H;  2IQQ A;  5FNV B;  3CCS F;  3IEQ A;  2ALE A;  3RYC B;  4HNA B;  1W42 A;  2HRU A;  3CCE F;  3P4E A;  2UYN A;  2Z1T A;  3N4Z A;  4RHA A;  4TV9 B;  5J2U B;  1FNJ A;  3M4S A;  3C8L A;  5FLX M;  5GIO C;  4X1Y B;  2IG8 A;  3CCU F;  3HKE B;  3I7T A;  3NK7 A;  3N4Y A;  1Z5W A;  5EB1 B;  3ON1 A;  5JCO C;  1K73 H;  1SZQ A;  3S06 A;  1VQN F;  5AVM A;  1JN1 A;  2H8C A;  3P0Z A;  1XV2 A;  5EAZ A;  1IPA A;  4O4I B;  4ZHW A;  1VQM F;  5GON A;  3LDT A;  5LP6 B;  3K12 A;  3RYI A;  1J7H A;  1W5E A;  3G6E F;  5KMG B;  2UYJ A;  3ERN A;  4TZZ A;  4EB6 B;  3JCM M;  4IHJ B;  3OON A;  4I55 B;  5EYP B;  3F6M A;  5IYZ A;  4EI9 A;  1W3E X;  3HWU A;  3CCM F;  3OBW A;  3JAT B;  1QU9 A;  2QI2 A;  5LXT B;  3MCA B;  3FD5 A;  3CC4 F;  1COM A;  1JD1 A;  2UYP A;  2Z1F A;  2ZOD A;  1Z5V A;  4TV8 B;  5EB0 A;  2PMP A;  2BO1 A;  1UI9 A;  2FC3 A;  2KGW A;  5HP8 A;  4ZHY B;  2KTU A;  3F0D A;  3M1X A;  3L7Q A;  1Q86 H;  2FGY A;  2Q1X A;  4DRX B;  3U0O A;  4DRX A;  1KNJ A;  4WBN B;  5IJ9 A;  5JH7 B;  2OTM A;  3VI6 A;  1E7K A;  5JCO A;  1VQV A;  5JQG B;  4X3L A;  3WJQ A;  5MN4 A;  1RLG A;  5EIB C;  1ZWZ A;  2YXZ A;  2VAM A;  1JJ2 F;  2VAP A;  3WJP A;  3KE1 A;  3K14 A;  3VO8 A;  3KJJ A;  4ZHQ B;  1TVK A;  3K0T A;  4O4J A;  4LCK A;  4O4J B;  4C8E A;  3ESJ A;  3C9U A;  3MQW A;  4FFB B;  4R40 B;  5J2T B;  4NQ3 A;  3Q8H A;  5KMG A;  4X3M A;  5FNV A;  4G4V A;  3LWO C;  1W5A A;  1OAP A;  2VXY A;  4O4H A;  5IJ0 B;  3KIZ A;  1YJW F;  3LFO A;  4PWT A;  1Q81 H;  1W41 A;  4TV9 A;  5J2U A;  1JY8 A;  1W55 A;  1H48 A;  4BT3 A;  3TD5 A;  1W57 A;  2CVL A;  3I56 F;  3SIV A;  2Z01 A;  3VMF B;  4TV8 A;  1VQO F;  1IV1 A;  5LA6 A;  1VK3 A;  4O4I A;  5KX5 A;  5LP6 A;  2WAL A;  2QEX F;  1RQ7 A;  3VIU A;  3JAW B;  1CN7 A;  4X1K B;  2P6Y A;  3CCQ F;  4G4X A;  4BY9 D;  3NK6 A;  4WBN A;  3G4S F;  1VQ4 F;  4B5C A;  4KWE A;  4YJ3 A;  2LBW A;  4X20 B;  1M1K H;  3J7A R;  3CCV F;  1W58 1;  1YI2 F;  3JAR A;  4B46 A;  4ZI7 B;  3JAR B;  5G4V C;  1KNK A;  5EYP A;  3FPI A;  4O4L B;  5IT9 M;  3JAT A;  1FFX A;  1IV2 A;  4BVT A;  5LOV B;  1U43 A;  2LCA A;  4F6R B;  2KG4 A;  3RYH B;  5HY0 A;  3CPW F;  1KQS F;  3RYH A;  3IEW A;  5EIB D;  4DXD A;  1YQN A;  5J2T A;  2AMT A;  5HY1 A;  3ZOP A;  1GO0 A;  3P10 A;  2OZB A;  3MCQ A;  3LWQ C;  1VQL F;  5HY2 A;  1VQ5 F;  5G4U C;  4X1Y A;  1IV3 A;  1FSZ A;  1JFF A;  3F0F A;  3TD3 A;  4B62 A;  4LNU B;  4LNU A;  5HY4 A;  4I4T A;  2R6R 1;  1VQP F;  3TD4 A;  3C9R A;  2VGM A;  3B6N A;  2BTU A;  1TVK B;  3R0P A;  5GON B;  3VCZ A;  3PAF A;  3LWR C;  1CK2 A;  3GTZ A;  1ONI A;  5GAP K;  3JVH A;  1K8A H;  3N2K A;  5CB4 A;  4ZHQ A;  2CHT A;  3VOB A;  5JVD B;  4C8I A;  3E22 A;  2HQS C;  3SIU A;  3UT5 A;  3GYQ A;  3J80 M;  2QTP A;  5GAN K;  3FBA A;  4EI7 A;  3CCL F;  2UYN B;  4G88 A;  1U40 A;  3ZP7 A;  3CYP B;  1W40 A;  2YYE A;  3VTI C;  3OBY A;  1U3L A;  1UFY A;  5BMV B;  1VQ8 F;  4IHJ A;  5BMV A;  4U3J B;  1SA0 B;  4TUY A;  2LBT A;  5IJ0 A;  1RQ2 A;  2ZF8 A;  3J81 M;  4X1I A;  3IMP A;  1FFX B;  2GLZ A;  4F6R A;  5CA1 A;  1GX1 A;  1T0A A;  3S02 A;  3V7E A;  3IR9 A;  2VGN A;  2HP0 B;  3KJK A;  5LA6 B;  2OTJ F;  1NQ3 A;  5EO3 A;  1VQ6 F;  1VQK F;  3N2G B;  2CSL A;  3N2G A;  1M90 H;  2BTO A;  1N8R H;  5HXU A;  3MBM A;  3M84 A;  4YJ2 A;  4C81 A;  2HS4 A;  2CZW A;  2L26 A;  2ZVZ A;  3C9T A;  3HKC A;  4BT2 A;  1W59 A;  2V9Y A;  2GVI A;  2HS0 A;  3HKB A;  2H8E A;  4I4T B;  4XCQ A;  3CG6 A;  3CCR F;  4RQO A;  3D00 A;  2H6L A;  4BVS A;  3ZP4 A;  2B33 A;  4IIJ B;  3S03 A;  1X52 A;  1K9M H;  4G4Y A;  3WGJ A;  2CHS A;  1KD1 H;  3E22 B;  3CMA F;  3NVI B;  1PF5 A;  4I50 B;  3OW2 F;  1VH8 A;  4I50 A;  3CB2 A;  3CC2 F;  1VHA A;  2JNB A;  3IKF A;  3HTN A;  5EZY A;  3F0E A;  4C82 A;  5EZY B;  4ZK7 A;  5ITZ A;  2MQE A;  5ITZ B;  4ZOL B;  4BT4 A;  3RE3 A;  1U3P A;  2I6R A;  2NMU A;  2BTQ B;  3PLA C;  3LYB A;  1GO1 A;  1XRG A;  5C8Y A;  5C8Y B;  3WXM B;  3DC2 A;  1YJN F;  5KX5 B;  5DCV A;  3WPW A;  3CCJ F;  1XHO A;  3JAK B;  5CA0 A;  2HX0 A;  4M8I A;  4BT7 A;  1YIJ F;  3JAM M;  2G9I A;  3I3F A; 
#chains in the Genus database with same CATH homology
 3BYQ A;  2QTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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