3BYQA

Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 a resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
191
structure length
191
Chain Sequence
SLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPREILFALVMGTGARVHARLGGLTKEAVSVHDGQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized protein DUF1185
publication title Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
pubmed doi rcsb
source organism Bordetella bronchiseptica rb50
total genus 47
structure length 191
sequence length 191
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06684 AA_synth Amino acid synthesis
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.110 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; BB2672 3byqA00
2QTPA 3BYQA
chains in the Genus database with same CATH superfamily
2P6YA 3KIZA 1W5AA 3N2GB 5CB4A 1VQLF 1VQ4F 2FGYA 3HTNA 5CA0A 2ZF8A 5LOVB 3HKEA 3CYPB 2OTJF 5ITZB 3VIUA 1T0KB 5G4VC 2QI2A 1QVGF 5KX5B 4TZZA 1M1KH 2VGMA 1XBIA 3KHNA 5LA6B 4I55B 4ZHYB 1IPAA 4B46A 3CG6A 3VI6A 2CWJA 3JARA 3NK6A 5JH7B 2MQEA 3V7QA 1YJWF 3JASA 2RHLA 3CC4F 4LNUB 3IEQA 4G88A 3ERNA 3CD6F 1M90H 3CC2F 3VYSC 3CCQF 4X1IB 4X1KA 2JNBA 1Q82H 5EB0A 3WGKA 4BVSA 4ZHWA 3CCLF 3M84A 1QD9A 2K1SA 1VQ9F 3WXMB 2HVYD 1RQ7A 4ERHA 4X1KB 3E22A 4F6RA 3ON1A 3NVIB 1VQKF 3DC2A 3WGNA 4B45A 2ZVZA 1W57A 2ZOVA 2BTUA 5JVDA 3K2XA 2UYPA 3CYQA 4WBNB 5EO3A 4O4HA 3R0PA 4O2BA 5IYZB 1Q81H 4FFBB 4G4YA 1H48A 4BY9D 3O85A 4HNAA 1W3EX 3OONA 5IJ9A 1UI9A 4IIJA 3CCUF 2VAMA 1IV1A 2WALA 2CHSA 3I3FA 3MBMA 3ESJA 2OZBA 4X3MA 2AIFA 1W581 4DRXB 3L7QA 5FJ4C 3HKCA 5J2UA 1UFYA 5GONB 1W55A 3FD6A 3JAWA 4I4TB 3RA6A 4YJ2A 5IT9M 2LCAA 3ZO8A 5LP6C 2UZHA 2AIZP 3S03A 4BT5A 1TUBA 2IAFA 2Q1YA 1RLUA 1Z5WA 2L26A 3F0GA 1U3LA 4IHJB 4ZHQB 5LYJA 4BW0B 3OW2F 3HAXD 3S02A 1KC8H 1X25A 3V7EA 2HS3A 2I6DA 5EZYB 3RYFA 1TUBB 3LWOC 2CHTA 1IV4A 5C8YA 3FPIA 1S72F 3N2KB 4C4WC 1GX1A 2Z01A 1KD1H 1FSZA 1COMA 1W5FA 2YYEA 1DT9A 3IKEA 1GZ0A 4G4XA 1X52A 3F0FA 3N4ZA 1K9MH 4X1YA 3JCMM 3CCJF 1K73H 2GVIA 3GHZA 3KJKA 2IG8A 2DYYA 3G71F 4BVTA 1FFXA 2HP3A 5J2TA 5KMGA 3VOAA 1VQ6F 2V9YA 5LP6A 4ZI7B 3SIUA 1JFFB 2RHOA 2FC3A 3B6NA 4NUTA 2VGNA 5KMGB 3E1YA 4B62A 3LWPC 2BO1A 1SA0A 4U3JA 4XCQA 5LP6B 5GIOC 5CB4B 2QTPA 2CSLA 3P10A 4O2AA 5CA0B 3BYQA 3CCMF 3LMEA 3S0YA 3HKEB 3IR9A 3JAKA 3FD5A 3RYIA 1IV3A 5MN5A 4O4JA 1YJ9F 3QHDA 2LBTA 3J80M 2QEXF 4O4LA 1NJIH 1YQNA 3LDTA 4O4IA 2OHWA 5EIBD 3JAKB 2PMPA 3RYHA 3G6EF 1YITF 1W2BF 2RB9A 3VTIC 1Q86H 3JARB 2VAPA 3CXCF 3CCSF 2HX0A 3JASB 1U3PA 2BTOA 3P4EA 4O4JB 3V3TA 3WGLA 2NMUA 3MCAB 3N4YA 4EI7A 4O4LB 2H8EA 3WJRA 3I7TA 3CPQA 3HKBA 3C9SA 3ZP7A 4EB6A 1SDSA 1XRGA 2Z1FA 2DT4A 3HJWC 3VOBA 3RA5A 3V4DA 4B5CA 2VAWA 4C8EA 3M4SA 1VQPF 3CMEF 1VQMF 5EWRA 2HRUA 3S0WA 3E22B 4F6RB 5GINC 2HS0A 4BT7A 2UYNA 3CPWF 4ZHVA 3F6MA 5LXTA 3ELCA 5JVDB 3D00A 4O4HB 3P0ZA 3FBAA 3K14A 4KWEA 4O2BB 5EYPA 5IJ0A 1OFUA 3RYCA 4E6EA 3DDNA 5HY4A 2RHHA 4HNAB 5A2QM 3SIVA 5IJ9B 3TD3A 3LFOA 3LWQC 1DBFA 3OBWA 4IIJB 1VQ7F 4LCKA 1ODEA 1YGYA 2ZAUA 4X3LA 5BMVA 3GYQA 2ZVYA 4G4WA 4BT2A 1W42A 3QTYA 5HXZA 3CCVF 3HKCB 5J2UB 1W41A 3VO8A 3JAWB 4YJ2B 2CZWA 3S06A 3WGJA 2LBXA 4TUYA 2Z1TA 4EI8A 4C82A 4YJ3A 3WGMA 5LYJB 2GZLA 4I50A 1CLIA 3JAMM 2CW4A 3RYFB 5HP7A 2G9IA 3TD5A 2HRYA 5C8YB 3CMAF 2UYKA 5EAZA 2CVLA 1VQOF 3U0OA 1PXWA 1CK2A 2I6RA 1KNJA 5AVMA 1RLGA 3C8LA 3IKFA 2KTUA 2OTMA 3JATA 5HY0A 1JD1A 3MQWA 3D54A 1W59A 3HKDA 3UT5A 4X1YB 2HS4A 1RA4A 5EIBC 4NWOB 5CA1A 1FFXB 1QAHA 3CC7F 1H47A 1U43A 5FNVA 1N8RH 5J2TB 2HP0A 3C9TA 5G4UC 1TVKA 4TV9A 3VMFB 3NVKE 3WPXA 1VH8A 5CA1B 2HQSC 4G4VA 2EWCA 2R6R1 1YIJF 5ITZA 4U39A 2KTVA 3E20B 2GLZA 1GO1A 4TV9B 5HWEA 4U3JB 1SA0B 2OTLF 1VK3A 2ZODA 5KX5A 3D01A 1VQVA 4O2AB 4EI9A 2H8CA 5LA6A 3IEWA 4I55A 3KJJA 2LBWA 3RYIB 5JH7A 2Z1UA 2W8BC 2B33A 2RHJA 5B8FA 5GAPK 4LNUA 5GIPC 3K0TA 5JCOA 2PHNA 3HWUA 3LWVC 4O4IB 3RYHB 3S0HA 3LYBA 3MCQA 4X1IA 1OAPA 1ZWZA 4R40B 1X7OA 5HY2A 3TD4A 2IQQA 3HKBB 3PAFA 3PLAC 3ZP4A 1FNJA 4ZOLA 4EB6B 4M8IA 1XHOA 3WJPA 4C8GA 3OBYA 5MN6A 1CN7A 5DCVA 4WBNA 2Z1EA 2R751 3EORA 3AGKA 2UYJA 3MDOA 3I55F 4ZOLB 5IYZA 1Q7YH 1VQ8F 4FFBA 4DXDA 3GTZA 1JJ2F 3I56F 2UYNB 1T0AA 5LXTB 3K12A 3T80A 3VYTC 1FNKA 4TV8A 1RQ2A 3FFMA 4BT4A 5HXUA 5EB1B 3M1XA 4DRXA 1YJNF 3CB2A 5EYPB 3VYUC 5IJ0B 3C9UA 5MN4A 4BVQA 3RYCB 5GONA 1K8AH 4I4TA 2QA4F 3NK7A 5FLXM 3IMPA 1J7HA 3JVHA 3KE1A 5GANK 1R1MA 4G4ZA 1TVKB 4TV8B 3VCZA 5JQGA 3RE3A 3NMUC 1VQNF 4IHJA 5BMVB 1JN1A 4ZHQA 3J81M 1QU9A 1QVFF 3QUWA 4X20A 1XV2A 1Q8RA 3JALA 1KNKA 3F0EA 1GO0A 1Z5VA 4C81A 5EZYA 3WPWA 3LWRC 1VHAA 5JQGB 1NQ3A 4PWTA 4TUYB 4NQ3A 4BT6A 2H6LA 4RHAA 3N2KA 1W5EA 4X20B 5HY1A 1ONIA 4YJ3B 3WJQA 3J7AR 3JALB 4RQOA 3CCRF 2KG4A 2Q1XA 4I50B 1X7PA 4ZK7A 1SZQA 3F0DA 2VXYA 1U40A 2YXZA 3Q8HA 5HP8A 3CCEF 3C9RA 1VQ5F 2BTQB 1YI2F 4C8IA 1NMUB 1W40A 2KGWA 5JCOC 2F9ZC 1JY8A 2ALEA 1W5BA 1H7MA 3JATB 3G4SF 4BT3A 1E7KA 3HKDB 3UT5B 1IV2A 4ZI7A 1JFFA 3N2GA 3ZOPA 2N48A 4BVRA 1KQSF 1YHQF 5FNVB 5LOVA 2HP0B 1PF5A 2AMTA
chains in the Genus database with same CATH topology
2QTPA 3BYQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QTP A;  3BYQ A; 
#chains in the Genus database with same CATH topology
 2P6Y A;  3KIZ A;  1W5A A;  3N2G B;  5CB4 A;  1VQL F;  1VQ4 F;  2FGY A;  3HTN A;  5CA0 A;  2ZF8 A;  5LOV B;  3HKE A;  3CYP B;  2OTJ F;  5ITZ B;  3VIU A;  1T0K B;  5G4V C;  2QI2 A;  1QVG F;  5KX5 B;  4TZZ A;  1M1K H;  2VGM A;  1XBI A;  3KHN A;  5LA6 B;  4I55 B;  4ZHY B;  1IPA A;  4B46 A;  3CG6 A;  3VI6 A;  2CWJ A;  3JAR A;  3NK6 A;  5JH7 B;  2MQE A;  3V7Q A;  1YJW F;  3JAS A;  2RHL A;  3CC4 F;  4LNU B;  3IEQ A;  4G88 A;  3ERN A;  3CD6 F;  1M90 H;  3CC2 F;  3VYS C;  3CCQ F;  4X1I B;  4X1K A;  2JNB A;  1Q82 H;  5EB0 A;  3WGK A;  4BVS A;  4ZHW A;  3CCL F;  3M84 A;  1QD9 A;  2K1S A;  1VQ9 F;  3WXM B;  2HVY D;  1RQ7 A;  4ERH A;  4X1K B;  3E22 A;  4F6R A;  3ON1 A;  3NVI B;  1VQK F;  3DC2 A;  3WGN A;  4B45 A;  2ZVZ A;  1W57 A;  2ZOV A;  2BTU A;  5JVD A;  3K2X A;  2UYP A;  3CYQ A;  4WBN B;  5EO3 A;  4O4H A;  3R0P A;  4O2B A;  5IYZ B;  1Q81 H;  4FFB B;  4G4Y A;  1H48 A;  4BY9 D;  3O85 A;  4HNA A;  1W3E X;  3OON A;  5IJ9 A;  1UI9 A;  4IIJ A;  3CCU F;  2VAM A;  1IV1 A;  2WAL A;  2CHS A;  3I3F A;  3MBM A;  3ESJ A;  2OZB A;  4X3M A;  2AIF A;  1W58 1;  4DRX B;  3L7Q A;  5FJ4 C;  3HKC A;  5J2U A;  1UFY A;  5GON B;  1W55 A;  3FD6 A;  3JAW A;  4I4T B;  3RA6 A;  4YJ2 A;  5IT9 M;  2LCA A;  3ZO8 A;  5LP6 C;  2UZH A;  2AIZ P;  3S03 A;  4BT5 A;  1TUB A;  2IAF A;  2Q1Y A;  1RLU A;  1Z5W A;  2L26 A;  3F0G A;  1U3L A;  4IHJ B;  4ZHQ B;  5LYJ A;  4BW0 B;  3OW2 F;  3HAX D;  3S02 A;  1KC8 H;  1X25 A;  3V7E A;  2HS3 A;  2I6D A;  5EZY B;  3RYF A;  1TUB B;  3LWO C;  2CHT A;  1IV4 A;  5C8Y A;  3FPI A;  1S72 F;  3N2K B;  4C4W C;  1GX1 A;  2Z01 A;  1KD1 H;  1FSZ A;  1COM A;  1W5F A;  2YYE A;  1DT9 A;  3IKE A;  1GZ0 A;  4G4X A;  1X52 A;  3F0F A;  3N4Z A;  1K9M H;  4X1Y A;  3JCM M;  3CCJ F;  1K73 H;  2GVI A;  3GHZ A;  3KJK A;  2IG8 A;  2DYY A;  3G71 F;  4BVT A;  1FFX A;  2HP3 A;  5J2T A;  5KMG A;  3VOA A;  1VQ6 F;  2V9Y A;  5LP6 A;  4ZI7 B;  3SIU A;  1JFF B;  2RHO A;  2FC3 A;  3B6N A;  4NUT A;  2VGN A;  5KMG B;  3E1Y A;  4B62 A;  3LWP C;  2BO1 A;  1SA0 A;  4U3J A;  4XCQ A;  5LP6 B;  5GIO C;  5CB4 B;  2QTP A;  2CSL A;  3P10 A;  4O2A A;  5CA0 B;  3BYQ A;  3CCM F;  3LME A;  3S0Y A;  3HKE B;  3IR9 A;  3JAK A;  3FD5 A;  3RYI A;  1IV3 A;  5MN5 A;  4O4J A;  1YJ9 F;  3QHD A;  2LBT A;  3J80 M;  2QEX F;  4O4L A;  1NJI H;  1YQN A;  3LDT A;  4O4I A;  2OHW A;  5EIB D;  3JAK B;  2PMP A;  3RYH A;  3G6E F;  1YIT F;  1W2B F;  2RB9 A;  3VTI C;  1Q86 H;  3JAR B;  2VAP A;  3CXC F;  3CCS F;  2HX0 A;  3JAS B;  1U3P A;  2BTO A;  3P4E A;  4O4J B;  3V3T A;  3WGL A;  2NMU A;  3MCA B;  3N4Y A;  4EI7 A;  4O4L B;  2H8E A;  3WJR A;  3I7T A;  3CPQ A;  3HKB A;  3C9S A;  3ZP7 A;  4EB6 A;  1SDS A;  1XRG A;  2Z1F A;  2DT4 A;  3HJW C;  3VOB A;  3RA5 A;  3V4D A;  4B5C A;  2VAW A;  4C8E A;  3M4S A;  1VQP F;  3CME F;  1VQM F;  5EWR A;  2HRU A;  3S0W A;  3E22 B;  4F6R B;  5GIN C;  2HS0 A;  4BT7 A;  2UYN A;  3CPW F;  4ZHV A;  3F6M A;  5LXT A;  3ELC A;  5JVD B;  3D00 A;  4O4H B;  3P0Z A;  3FBA A;  3K14 A;  4KWE A;  4O2B B;  5EYP A;  5IJ0 A;  1OFU A;  3RYC A;  4E6E A;  3DDN A;  5HY4 A;  2RHH A;  4HNA B;  5A2Q M;  3SIV A;  5IJ9 B;  3TD3 A;  3LFO A;  3LWQ C;  1DBF A;  3OBW A;  4IIJ B;  1VQ7 F;  4LCK A;  1ODE A;  1YGY A;  2ZAU A;  4X3L A;  5BMV A;  3GYQ A;  2ZVY A;  4G4W A;  4BT2 A;  1W42 A;  3QTY A;  5HXZ A;  3CCV F;  3HKC B;  5J2U B;  1W41 A;  3VO8 A;  3JAW B;  4YJ2 B;  2CZW A;  3S06 A;  3WGJ A;  2LBX A;  4TUY A;  2Z1T A;  4EI8 A;  4C82 A;  4YJ3 A;  3WGM A;  5LYJ B;  2GZL A;  4I50 A;  1CLI A;  3JAM M;  2CW4 A;  3RYF B;  5HP7 A;  2G9I A;  3TD5 A;  2HRY A;  5C8Y B;  3CMA F;  2UYK A;  5EAZ A;  2CVL A;  1VQO F;  3U0O A;  1PXW A;  1CK2 A;  2I6R A;  1KNJ A;  5AVM A;  1RLG A;  3C8L A;  3IKF A;  2KTU A;  2OTM A;  3JAT A;  5HY0 A;  1JD1 A;  3MQW A;  3D54 A;  1W59 A;  3HKD A;  3UT5 A;  4X1Y B;  2HS4 A;  1RA4 A;  5EIB C;  4NWO B;  5CA1 A;  1FFX B;  1QAH A;  3CC7 F;  1H47 A;  1U43 A;  5FNV A;  1N8R H;  5J2T B;  2HP0 A;  3C9T A;  5G4U C;  1TVK A;  4TV9 A;  3VMF B;  3NVK E;  3WPX A;  1VH8 A;  5CA1 B;  2HQS C;  4G4V A;  2EWC A;  2R6R 1;  1YIJ F;  5ITZ A;  4U39 A;  2KTV A;  3E20 B;  2GLZ A;  1GO1 A;  4TV9 B;  5HWE A;  4U3J B;  1SA0 B;  2OTL F;  1VK3 A;  2ZOD A;  5KX5 A;  3D01 A;  1VQV A;  4O2A B;  4EI9 A;  2H8C A;  5LA6 A;  3IEW A;  4I55 A;  3KJJ A;  2LBW A;  3RYI B;  5JH7 A;  2Z1U A;  2W8B C;  2B33 A;  2RHJ A;  5B8F A;  5GAP K;  4LNU A;  5GIP C;  3K0T A;  5JCO A;  2PHN A;  3HWU A;  3LWV C;  4O4I B;  3RYH B;  3S0H A;  3LYB A;  3MCQ A;  4X1I A;  1OAP A;  1ZWZ A;  4R40 B;  1X7O A;  5HY2 A;  3TD4 A;  2IQQ A;  3HKB B;  3PAF A;  3PLA C;  3ZP4 A;  1FNJ A;  4ZOL A;  4EB6 B;  4M8I A;  1XHO A;  3WJP A;  4C8G A;  3OBY A;  5MN6 A;  1CN7 A;  5DCV A;  4WBN A;  2Z1E A;  2R75 1;  3EOR A;  3AGK A;  2UYJ A;  3MDO A;  3I55 F;  4ZOL B;  5IYZ A;  1Q7Y H;  1VQ8 F;  4FFB A;  4DXD A;  3GTZ A;  1JJ2 F;  3I56 F;  2UYN B;  1T0A A;  5LXT B;  3K12 A;  3T80 A;  3VYT C;  1FNK A;  4TV8 A;  1RQ2 A;  3FFM A;  4BT4 A;  5HXU A;  5EB1 B;  3M1X A;  4DRX A;  1YJN F;  3CB2 A;  5EYP B;  3VYU C;  5IJ0 B;  3C9U A;  5MN4 A;  4BVQ A;  3RYC B;  5GON A;  1K8A H;  4I4T A;  2QA4 F;  3NK7 A;  5FLX M;  3IMP A;  1J7H A;  3JVH A;  3KE1 A;  5GAN K;  1R1M A;  4G4Z A;  1TVK B;  4TV8 B;  3VCZ A;  5JQG A;  3RE3 A;  3NMU C;  1VQN F;  4IHJ A;  5BMV B;  1JN1 A;  4ZHQ A;  3J81 M;  1QU9 A;  1QVF F;  3QUW A;  4X20 A;  1XV2 A;  1Q8R A;  3JAL A;  1KNK A;  3F0E A;  1GO0 A;  1Z5V A;  4C81 A;  5EZY A;  3WPW A;  3LWR C;  1VHA A;  5JQG B;  1NQ3 A;  4PWT A;  4TUY B;  4NQ3 A;  4BT6 A;  2H6L A;  4RHA A;  3N2K A;  1W5E A;  4X20 B;  5HY1 A;  1ONI A;  4YJ3 B;  3WJQ A;  3J7A R;  3JAL B;  4RQO A;  3CCR F;  2KG4 A;  2Q1X A;  4I50 B;  1X7P A;  4ZK7 A;  1SZQ A;  3F0D A;  2VXY A;  1U40 A;  2YXZ A;  3Q8H A;  5HP8 A;  3CCE F;  3C9R A;  1VQ5 F;  2BTQ B;  1YI2 F;  4C8I A;  1NMU B;  1W40 A;  2KGW A;  5JCO C;  2F9Z C;  1JY8 A;  2ALE A;  1W5B A;  1H7M A;  3JAT B;  3G4S F;  4BT3 A;  1E7K A;  3HKD B;  3UT5 B;  1IV2 A;  4ZI7 A;  1JFF A;  3N2G A;  3ZOP A;  2N48 A;  4BVR A;  1KQS F;  1YHQ F;  5FNV B;  5LOV A;  2HP0 B;  1PF5 A;  2AMT A; 
#chains in the Genus database with same CATH homology
 2QTP A;  3BYQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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