The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
170
|
sequence length |
446
|
structure length |
446
|
Chain Sequence |
MFTTKLAEKVVSAWKAKISQPALKAAQDGVIDTVAAALGGVTEHSVQVALKYVAATGGSGDSKLWGVNQRSNMFDAAFVNGMAAHAIDFDDSFPVMRGHPSSSLVPAIFAVGEHVGANGHNCLKSYVLGIEVVATLGRAVGKGHYLAGWHPTSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNFGTMTKPMHTGSAARNGVLSAWLSMQSFTGCQTVFDDAEGILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYKKSWPSCYANHKPLAGLFAIMKEHGLTGQDISHVDVGFLPGVEKPLLYMDPRTTEEAKFSIEANIGAALLDGEVSLASFEIEHLDRPAMRAAMKKVTRFDMPSETTFSGTTGYTDIVVHTADGKIERRIEATPGSLEDPMDDAHLERKFKDCTAWMPFGESGLLFDRLRSLTADQGIKTVQP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| source organism |
Agrobacterium tumefaciens
|
| publication title |
Three-dimensional Structure of Iminodisuccinate Epimerase Defines the Fold of the MmgE/PrpD Protein Family.
pubmed doi rcsb |
| molecule keywords |
IDS-epimerase
|
| total genus |
170
|
| structure length |
446
|
| sequence length |
446
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-07-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03972 | MmgE_PrpD | MmgE/PrpD family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | ||
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 2-methylcitrate dehydratase PrpD |
#chains in the Genus database with same CATH superfamily 2HP3 A; 2HP0 A; 2HP0 B; 1SZQ A; #chains in the Genus database with same CATH topology 3V4D A; 4YJ3 A; 3CC2 F; 3VI6 A; 1JY8 A; 4ERH A; 2LBX A; 4BT3 A; 4DXD A; 2ZOV A; 1RQ7 A; 3HKC A; 2Q1Y A; 3CPW F; 4I4T A; 1VQM F; 1VQ4 F; 2WAL A; 4EB6 B; 1GO0 A; 3CCM F; 1JFF A; 3JAL A; 4ZI7 B; 3LWP C; 1XBI A; 4YJ2 B; 5FNV A; 5J2U B; 2AIF A; 3CCQ F; 1W2B F; 3CD6 F; 1X52 A; 3V7E A; 1PF5 A; 1JD1 A; 2HS3 A; 5KMG A; 3RYF A; 4B45 A; 4BT6 A; 4BT2 A; 5FJ4 C; 4U3J B; 4BT7 A; 2HRU A; 3JAT B; 5LOV B; 4O2B A; 3M1X A; 1T0A A; 3G6E F; 4TUY A; 3ZP7 A; 2G9I A; 3P10 A; 5JQG B; 2KGW A; 3I7T A; 3D00 A; 4X1Y A; 3I3F A; 3WJR A; 3LYB A; 2CHS A; 4R40 B; 4O4I A; 4X1I B; 5LP6 B; 2HP0 A; 4B5C A; 1TVK B; 4NWO B; 2QI2 A; 5EWR A; 5HY4 A; 1IV4 A; 3QUW A; 1YIJ F; 5EB0 A; 3N2G B; 5HXZ A; 3NK6 A; 2ZAU A; 3JAM M; 1VQ5 F; 1Z5V A; 2Z1U A; 5EYP B; 3KJK A; 2L26 A; 1S72 F; 1TUB A; 4EI7 A; 5IJ9 B; 4WBN A; 2QEX F; 3F0D A; 1K9M H; 3QHD A; 3VYU C; 1Q82 H; 4ZOL A; 3CYQ A; 1KNK A; 3RYC B; 1W58 1; 2R6R 1; 4BT4 A; 3N2K A; 2KTV A; 5HP8 A; 5LXT A; 3ON1 A; 4O4H B; 3HKD A; 1R1M A; 2FC3 A; 5HY1 A; 2Z1F A; 3S03 A; 1J7H A; 3VOA A; 1FNK A; 2PHN A; 2Z1T A; 4G4Y A; 2UYN A; 3NK7 A; 3BYQ A; 2HS0 A; 5LA6 B; 5GIP C; 1YJN F; 3HAX D; 4HNA B; 3OBW A; 3SIV A; 3F6M A; 3V7Q A; 2GVI A; 2BTO A; 5CA1 A; 1T0K B; 2RB9 A; 4C8E A; 4BVQ A; 2OHW A; 1VQ7 F; 2QTP A; 3JAW A; 1VQL F; 5CA0 A; 3WGN A; 1W40 A; 5IYZ B; 5AVM A; 4C81 A; 4ZHY B; 3RYI A; 1CN7 A; 3LWQ C; 1RA4 A; 2I6R A; 3KIZ A; 4I50 B; 2PMP A; 4E6E A; 1YIT F; 3TD4 A; 3VYT C; 2CW4 A; 2DYY A; 1JJ2 F; 1QU9 A; 2GZL A; 3UT5 A; 3KHN A; 3WGJ A; 1VK3 A; 4X20 B; 1IV2 A; 1SA0 B; 3MDO A; 3QTY A; 1H7M A; 4X3M A; 3RYH B; 5C8Y B; 3O85 A; 5ITZ A; 1U3P A; 1W5F A; 3FPI A; 2V9Y A; 2IG8 A; 2RHL A; 5LYJ B; 3JAK A; 1GZ0 A; 4DRX A; 5GON A; 3JAS A; 5G4V C; 3GHZ A; 4O4L A; 1W55 A; 5JCO C; 3K2X A; 4LCK A; 1H47 A; 3NVI B; 1CK2 A; 1VHA A; 2YYE A; 4IIJ B; 4BVR A; 2UYJ A; 5MN6 A; 3E22 A; 1H48 A; 5CB4 A; 1SDS A; 3LDT A; 2NMU A; 1VQN F; 3CC4 F; 3P4E A; 4BVS A; 1N8R H; 4ZHQ B; 3CCS F; 4BW0 B; 4TZZ A; 3IEW A; 3K14 A; 2Z01 A; 5JVD B; 1VH8 A; 1W5A A; 2I6D A; 1IV3 A; 4ZI7 A; 3LWV C; 4X1K B; 4YJ2 A; 3KE1 A; 4BT5 A; 3CC7 F; 5BMV B; 3JAR B; 1OAP A; 3SIU A; 4G4X A; 4TV8 B; 1X25 A; 5EAZ A; 1VQ9 F; 5HP7 A; 1DT9 A; 4U3J A; 3CCV F; 5IJ0 A; 2OTM A; 2MQE A; 3JAT A; 5LOV A; 2W8B C; 1K8A H; 1VQO F; 5MN5 A; 5DCV A; 1U40 A; 3C9S A; 3IEQ A; 3D01 A; 4KWE A; 3ELC A; 4X1I A; 5LP6 A; 2QA4 F; 1IPA A; 3IMP A; 2FGY A; 5J2T B; 3I55 F; 1W5E A; 4RHA A; 5LP6 C; 2ALE A; 5KMG B; 1TVK A; 3E20 B; 3DDN A; 5HWE A; 3CXC F; 3N2G A; 3WGM A; 4O2B B; 3HKE B; 3OON A; 3CCU F; 3Q8H A; 5EYP A; 3FD5 A; 2ZOD A; 1W5B A; 1QVG F; 1FFX B; 3N4Z A; 5IJ9 A; 3DC2 A; 3ERN A; 1VQ6 F; 2Q1X A; 5HXU A; 5HY2 A; 3FBA A; 3L7Q A; 3V3T A; 1X7P A; 3RYC A; 3HJW C; 3VMF B; 2RHJ A; 3GTZ A; 4O4H A; 4IHJ B; 4C82 A; 1JN1 A; 5A2Q M; 1XHO A; 3F0G A; 1Q7Y H; 2BTU A; 3CME F; 4EI9 A; 4G4V A; 2OTL F; 1YHQ F; 4C8G A; 5LA6 A; 1Q81 H; 5G4U C; 2F9Z C; 1GX1 A; 1W41 A; 3C9T A; 4HNA A; 1QVF F; 3J80 M; 1OFU A; 4G4W A; 4C8I A; 1NJI H; 2OZB A; 2VGN A; 2Z1E A; 3GYQ A; 3CCL F; 4I50 A; 3WGK A; 1QAH A; 3IR9 A; 4TV9 B; 4I55 A; 1UI9 A; 1YJ9 F; 4O4J B; 4LNU B; 3WPW A; 3PLA C; 4FFB B; 5EZY A; 4X20 A; 3VCZ A; 3WJP A; 1KNJ A; 1SA0 A; 1E7K A; 4O2A B; 1YJW F; 4F6R B; 2H8E A; 4U39 A; 2AIZ P; 1W42 A; 3RYH A; 5C8Y A; 2ZVY A; 2IAF A; 1ZWZ A; 2IQQ A; 5JCO A; 2CVL A; 3RA6 A; 1K73 H; 1CLI A; 1RLG A; 3NMU C; 2HVY D; 4IIJ A; 1X7O A; 2ZF8 A; 3JCM M; 4BY9 D; 2DT4 A; 2BO1 A; 3F0E A; 3VO8 A; 3VTI C; 3CB2 A; 3TD3 A; 3M84 A; 1RQ2 A; 3FFM A; 3JVH A; 5GIO C; 2H6L A; 3VIU A; 3CYP B; 5HY0 A; 5JH7 B; 1YI2 F; 3OW2 F; 4G88 A; 4ZHQ A; 2HRY A; 1VQP F; 3WJQ A; 4EB6 A; 1VQ8 F; 5KX5 B; 4X1K A; 4ZHV A; 5GIN C; 3MQW A; 2VAM A; 3HKB B; 3M4S A; 4BVT A; 3AGK A; 5J2U A; 1NMU B; 1W59 A; 2UYK A; 4NQ3 A; 1ONI A; 5BMV A; 5CB4 B; 4YJ3 B; 4TV8 A; 3EOR A; 3ZOP A; 3MCA B; 3HKC B; 2UZH A; 4I4T B; 3J81 M; 3CMA F; 3C9R A; 2AMT A; 3P0Z A; 5JQG A; 1KC8 H; 3OBY A; 1COM A; 1JFF B; 3JAL B; 3LWR C; 3ZO8 A; 2VGM A; 5GAN K; 5FNV B; 5J2T A; 3F0F A; 3VYS C; 2H8C A; 2VAP A; 1W3E X; 2P6Y A; 1PXW A; 3RYF B; 3MCQ A; 3IKE A; 2HS4 A; 3CCR F; 4EI8 A; 5IJ0 B; 3WXM B; 3C9U A; 1FNJ A; 3S06 A; 3CG6 A; 3CPQ A; 3HKE A; 2JNB A; 5EB1 B; 4TUY B; 1KD1 H; 3E1Y A; 4X1Y B; 3S02 A; 1FFX A; 2R75 1; 3LFO A; 3K0T A; 4O4I B; 5EO3 A; 2HP0 B; 3FD6 A; 3G4S F; 5IT9 M; 2CHT A; 2HQS C; 2BTQ B; 4X3L A; 3RA5 A; 4IHJ A; 2LBW A; 3D54 A; 3IKF A; 1SZQ A; 1U43 A; 2K1S A; 5B8F A; 5EIB C; 2EWC A; 3PAF A; 3HWU A; 4RQO A; 1TUB B; 3WPX A; 4WBN B; 5GAP K; 4ZOL B; 3G71 F; 2VAW A; 2N48 A; 1XV2 A; 3CCJ F; 2HX0 A; 1FSZ A; 4B62 A; 3N2K B; 5LXT B; 4NUT A; 5MN4 A; 2CSL A; 4G4Z A; 3HKD B; 3WGL A; 3NVK E; 4XCQ A; 3CCE F; 1M90 H; 3MBM A; 1VQV A; 4ZK7 A; 5IYZ A; 2CZW A; 2UYN B; 1IV1 A; 2LBT A; 4TV9 A; 3RE3 A; 1Q86 H; 2CWJ A; 1DBF A; 3J7A R; 3I56 F; 4O4J A; 4LNU A; 2B33 A; 4FFB A; 5CA1 B; 3S0H A; 4PWT A; 3T80 A; 1Q8R A; 1XRG A; 3LWO C; 4O2A A; 1UFY A; 2ZVZ A; 4F6R A; 1NQ3 A; 3JAW B; 2KTU A; 3TD5 A; 5CA0 B; 3S0W A; 2RHO A; 3RYI B; 4C4W C; 1GO1 A; 1U3L A; 3ESJ A; 3ZP4 A; 2OTJ F; 2RHH A; 5LYJ A; 3K12 A; 3N4Y A; 5FLX M; 4I55 B; 1M1K H; 3LME A; 5EIB D; 2GLZ A; 3UT5 B; 4M8I A; 3VOB A; 4B46 A; 5EZY B; 1Z5W A; 2UYP A; 1YGY A; 1W57 A; 2VXY A; 3S0Y A; 2LCA A; 1QD9 A; 4ZHW A; 5ITZ B; 5JH7 A; 3KJJ A; 2HP3 A; 3B6N A; 1YQN A; 5JVD A; 1RLU A; 3JAK B; 1ODE A; 5GON B; 3JAS B; 4DRX B; 5KX5 A; 4O4L B; 1VQK F; 2YXZ A; 3HTN A; 2KG4 A; 3HKB A; 3C8L A; 1KQS F; 3R0P A; 3E22 B; 3JAR A; 3U0O A; #chains in the Genus database with same CATH homology 2HP3 A; 2HP0 A; 2HP0 B; 1SZQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
