The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
70
|
sequence length |
248
|
structure length |
248
|
Chain Sequence |
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb |
| molecule keywords |
F420-0:gamma-glutamyl ligase
|
| molecule tags |
Ligase
|
| source organism |
Archaeoglobus fulgidus dsm 4304
|
| total genus |
70
|
| structure length |
248
|
| sequence length |
248
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.3.2.31: Coenzyme F420-0:L-glutamate ligase. |
| pdb deposition date | 2007-04-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01996 | F420_ligase | F420-0:Gamma-glutamyl ligase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | CofE-like | ||
| Alpha Beta | Alpha-Beta Complex | CofE-like fold | CofE-like domain |
#chains in the Genus database with same CATH superfamily 2G9I A; 2PHN A; #chains in the Genus database with same CATH topology 5C8Y B; 5FJ4 C; 2I6D A; 3AGK A; 3J81 M; 1K8A H; 3J7A R; 1X52 A; 5CA0 B; 3G6E F; 3UT5 B; 4B45 A; 4BT5 A; 3HTN A; 3N2K A; 3CYQ A; 5HY1 A; 1FNK A; 4FFB A; 3S0H A; 3EOR A; 3OW2 F; 2HRU A; 4I50 A; 4I55 A; 1M1K H; 3OBY A; 3IKE A; 3HKE B; 3RYI B; 5IJ9 A; 2CVL A; 1NQ3 A; 2OTJ F; 1VQN F; 2F9Z C; 2UYJ A; 1Q7Y H; 2IG8 A; 1J7H A; 5EZY A; 2MQE A; 3HWU A; 5CB4 B; 5HXZ A; 3MBM A; 2UYN A; 5LOV B; 2UYP A; 5IT9 M; 4EB6 B; 1Q86 H; 3GYQ A; 3HKB B; 5J2T A; 5LXT B; 5MN5 A; 4DXD A; 1VQ9 F; 4YJ2 A; 3GTZ A; 1JFF A; 5HXU A; 4ZOL B; 5MN4 A; 4O4L B; 4ERH A; 3G71 F; 1E7K A; 1VQ4 F; 5G4V C; 4HNA B; 5HY4 A; 2LBX A; 5C8Y A; 1RLG A; 4O4H B; 1VHA A; 1X7P A; 4X3M A; 1H47 A; 3WJQ A; 3QHD A; 2QTP A; 3LFO A; 3CYP B; 5CA0 A; 1W59 A; 4U3J B; 3IEW A; 1M90 H; 2ZVY A; 2B33 A; 3CB2 A; 3UT5 A; 4BT7 A; 2VAP A; 4G4Z A; 3CCM F; 3F6M A; 1VQV A; 5EWR A; 1VQ6 F; 5IYZ B; 3CC2 F; 4BT6 A; 2HP0 B; 3F0F A; 2K1S A; 4NUT A; 2HS4 A; 2R6R 1; 2WAL A; 3F0D A; 4BT4 A; 4U39 A; 1YI2 F; 2VAW A; 3HKE A; 3RYI A; 1S72 F; 3VIU A; 1H7M A; 1ONI A; 3LWO C; 2OTM A; 2V9Y A; 3I7T A; 1K73 H; 3V7Q A; 1QD9 A; 2VAM A; 3ZP4 A; 4EI8 A; 1FFX B; 2Z1E A; 5CB4 A; 1FSZ A; 5LOV A; 3CMA F; 2LCA A; 3LWP C; 3F0E A; 4R40 B; 4EB6 A; 5B8F A; 3G4S F; 1K9M H; 4C4W C; 3HKB A; 3JAK B; 5LXT A; 3O85 A; 5DCV A; 5JH7 B; 3IKF A; 2GVI A; 3RYC B; 1VQL F; 3HAX D; 4ZOL A; 3JAT B; 2FGY A; 1W42 A; 4O4L A; 1RA4 A; 4B5C A; 2Q1Y A; 1PXW A; 4HNA A; 3FBA A; 3KIZ A; 2JNB A; 3MDO A; 3L7Q A; 4O4H A; 2YXZ A; 2HQS C; 1SZQ A; 1KC8 H; 1KQS F; 3TD3 A; 1JJ2 F; 4U3J A; 1IV3 A; 3K12 A; 1UFY A; 3VYU C; 3DDN A; 3LWQ C; 2QI2 A; 3SIV A; 5IYZ A; 2OTL F; 4TV9 B; 4RHA A; 3NMU C; 1Z5V A; 2HP0 A; 2RHH A; 3S0Y A; 2VGN A; 5EYP B; 1RQ7 A; 3E1Y A; 3GHZ A; 3CPW F; 3WPW A; 2GZL A; 1XBI A; 4LNU B; 4C82 A; 3E20 B; 2I6R A; 2VGM A; 3KE1 A; 1TVK B; 1FFX A; 1Q82 H; 3T80 A; 3ZOP A; 1YHQ F; 3VO8 A; 5GAN K; 2HX0 A; 4IHJ B; 3JAK A; 3E22 B; 2H8C A; 5JH7 A; 3WGJ A; 3RYC A; 3LDT A; 2BTQ B; 3TD4 A; 3JVH A; 5KMG B; 2ALE A; 4BVS A; 3JAT A; 1W41 A; 3ESJ A; 5A2Q M; 2Q1X A; 3M4S A; 5HP8 A; 2HVY D; 4O4I B; 1U40 A; 3IEQ A; 3WGK A; 3C9S A; 4ZHW A; 5LP6 B; 4X3L A; 3CCV F; 2DT4 A; 2YYE A; 4EI9 A; 1QU9 A; 4BY9 D; 1IV4 A; 2LBT A; 2DYY A; 1DT9 A; 2KTU A; 2CWJ A; 3NVK E; 3CD6 F; 3LME A; 4TV9 A; 3M84 A; 2GLZ A; 2N48 A; 3D01 A; 2BTU A; 5KX5 B; 2IAF A; 4BW0 B; 1CN7 A; 1YJN F; 3MQW A; 4YJ3 B; 5EYP A; 5EO3 A; 3N4Z A; 4ZI7 B; 1W5F A; 2RHL A; 4LNU A; 5EB0 A; 1VQK F; 5HY2 A; 1TVK A; 2AMT A; 3N2G B; 2Z01 A; 3ERN A; 3VCZ A; 1Q81 H; 5FNV B; 3QUW A; 5JCO A; 1YQN A; 4DRX B; 4B62 A; 4IHJ A; 3P10 A; 3E22 A; 3NK7 A; 3RE3 A; 3HKD B; 2ZOV A; 3VTI C; 3ZP7 A; 1X7O A; 3FD5 A; 2CZW A; 5KMG A; 3IR9 A; 1RQ2 A; 1JY8 A; 4PWT A; 3CC4 F; 1QVF F; 2L26 A; 3JAM M; 4O4I A; 1YJ9 F; 3S0W A; 3CME F; 5EAZ A; 5HWE A; 4NWO B; 5LP6 A; 3HKC B; 4ZHQ B; 2P6Y A; 2BO1 A; 4C8I A; 4O4J B; 2Z1F A; 2UYK A; 5BMV B; 2KG4 A; 4NQ3 A; 1U3L A; 2PHN A; 2AIZ P; 3MCQ A; 1VK3 A; 3DC2 A; 4G88 A; 1W2B F; 2H6L A; 3NVI B; 2OZB A; 2IQQ A; 5KX5 A; 1GO0 A; 4O2B B; 5GAP K; 1XV2 A; 3JAR B; 3CCS F; 4IIJ B; 4YJ3 A; 4TV8 B; 2VXY A; 3JAW B; 2PMP A; 3V4D A; 3RA6 A; 3WJP A; 5CA1 B; 3OON A; 5HP7 A; 4ZI7 A; 3F0G A; 3RYH B; 3I3F A; 4ZK7 A; 3N2G A; 3JCM M; 4X1K B; 3R0P A; 3ON1 A; 2HRY A; 5FLX M; 5FNV A; 1VQ5 F; 1NMU B; 1RLU A; 2W8B C; 4DRX A; 5IJ0 B; 4X20 B; 2QA4 F; 2Z1T A; 2AIF A; 2CW4 A; 1VH8 A; 3HKD A; 5EB1 B; 3VI6 A; 3IMP A; 1U3P A; 4C81 A; 3PAF A; 1VQ8 F; 4G4Y A; 2OHW A; 3VOB A; 1JN1 A; 3B6N A; 1UI9 A; 3LWV C; 1XHO A; 3C9U A; 4XCQ A; 5JVD B; 1W57 A; 3RA5 A; 3HKC A; 4KWE A; 2BTO A; 4ZHQ A; 4G4V A; 5G4U C; 4O4J A; 1W55 A; 5BMV A; 3C9R A; 1IV1 A; 5ITZ B; 2LBW A; 4F6R B; 1YJW F; 3VOA A; 1IV2 A; 1YIT F; 5MN6 A; 5HY0 A; 4O2B A; 1W5E A; 1H48 A; 4I4T B; 3JAR A; 4IIJ A; 5GIO C; 3NK6 A; 3FPI A; 4TV8 A; 3JAW A; 3CPQ A; 5GIN C; 5CA1 A; 3J80 M; 3Q8H A; 2G9I A; 2NMU A; 2UZH A; 3FD6 A; 3RYH A; 1CK2 A; 4RQO A; 1COM A; 4X1K A; 3VYT C; 1W5A A; 4G4X A; 3V3T A; 3P0Z A; 3I55 F; 3BYQ A; 1TUB B; 3JAS B; 5IJ0 A; 1CLI A; 4X20 A; 1XRG A; 3CXC F; 3C8L A; 3SIU A; 3CG6 A; 2RHO A; 1YGY A; 3VMF B; 3RYF B; 5EIB D; 4B46 A; 1QVG F; 2HS0 A; 4C8E A; 5LA6 B; 3N4Y A; 1SDS A; 1ODE A; 3CCU F; 4BVR A; 5GON B; 1GZ0 A; 4BVQ A; 1NJI H; 3LYB A; 1KNJ A; 4X1Y B; 1VQM F; 5JVD A; 1T0A A; 1W58 1; 2ZOD A; 3KJJ A; 4WBN B; 3V7E A; 1YIJ F; 1JD1 A; 4TUY B; 1T0K B; 3VYS C; 1VQP F; 1VQO F; 3WGM A; 5ITZ A; 3D00 A; 1Q8R A; 4F6R A; 3U0O A; 1OFU A; 4I4T A; 4G4W A; 1SA0 B; 5J2U B; 1IPA A; 2FC3 A; 4O2A B; 3WGN A; 4X1I B; 1R1M A; 3JAL B; 5AVM A; 5LYJ B; 5JQG B; 3WJR A; 2ZVZ A; 3HJW C; 3D54 A; 1TUB A; 5JCO C; 1W40 A; 3JAS A; 3CCQ F; 4C8G A; 2ZAU A; 5EIB C; 1Z5W A; 1ZWZ A; 4EI7 A; 3S02 A; 3M1X A; 3TD5 A; 3RYF A; 2RB9 A; 3K2X A; 3N2K B; 4FFB B; 5LA6 A; 1U43 A; 4ZHV A; 3I56 F; 3CCR F; 5GON A; 1W3E X; 4I50 B; 4I55 B; 3K0T A; 4E6E A; 4X1Y A; 5LP6 C; 5IJ9 B; 4WBN A; 3OBW A; 2Z1U A; 3KJK A; 3ZO8 A; 3CCJ F; 2EWC A; 3ELC A; 3MCA B; 1DBF A; 4TUY A; 3WXM B; 1KD1 H; 4BT3 A; 2H8E A; 1GO1 A; 3S03 A; 5EZY B; 1QAH A; 3QTY A; 3CCL F; 2UYN B; 1N8R H; 1OAP A; 1PF5 A; 2KTV A; 2KGW A; 3CC7 F; 4LCK A; 3C9T A; 3KHN A; 4M8I A; 1SA0 A; 1W5B A; 5J2U A; 1KNK A; 3K14 A; 3P4E A; 3WGL A; 5J2T B; 2HP3 A; 3CCE F; 4O2A A; 2CHS A; 2RHJ A; 2QEX F; 4X1I A; 1VQ7 F; 4YJ2 B; 2HS3 A; 2ZF8 A; 4BVT A; 5GIP C; 1JFF B; 1X25 A; 3PLA C; 3JAL A; 5LYJ A; 5JQG A; 3LWR C; 1GX1 A; 2CSL A; 4TZZ A; 2CHT A; 4ZHY B; 3S06 A; 2R75 1; 4BT2 A; 3WPX A; 3FFM A; 1FNJ A; #chains in the Genus database with same CATH homology 2G9I A; 2PHN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
