2H8CA

Structure of rusa d70n in complex with dna
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
b'NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase/dna
total genus 31
structure length 117
sequence length 117
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8cA00
2H8CA 1Q8RA 2H8EA
chains in the Genus database with same CATH superfamily
2JNBA 1W55A 5CB4B 3FBAA 5C8YB 3CG6A 1K8AH 4TV8B 3NVKE 1M90H 5GIPC 1OFUA 3JALA 2PHNA 2HRUA 2IQQA 5HY0A 1J7HA 3E22B 3CD6F 2ZAUA 2VAPA 5EIBD 4HNAA 3VMFB 3ZOPA 3IEQA 3HTNA 5ITZA 2HP3A 4R40B 3VO8A 3U0OA 5GIOC 5HXZA 2Q1XA 4G4VA 1X7OA 3VIUA 2HVYD 1PXWA 4O4JA 2KG4A 2RHOA 3WPWA 2QA4F 3CXCF 3C9RA 3NK7A 3QUWA 4O2BB 5IJ9A 4X1IB 1JFFB 3KE1A 2OTMA 2YYEA 4I4TB 4O4IA 1Z5VA 3F6MA 3D54A 3I3FA 5HY1A 3CMEF 3LWOC 4E6EA 1KC8H 1FNJA 3JAMM 1Q8RA 3P10A 4X1KA 1VQMF 3K14A 3CYQA 5EAZA 3R0PA 4YJ3B 3CCQF 1JN1A 4F6RA 5JVDB 5LOVB 1T0KB 2P6YA 4IIJB 1XV2A 2UYPA 2BTUA 1XHOA 3JAWB 1RQ7A 3GTZA 3LMEA 3DC2A 4I50A 1QU9A 4X1YA 3WGKA 3RE3A 2RHJA 1KNKA 1TUBA 3BYQA 3ELCA 3ON1A 5CB4A 4C82A 5C8YA 1YHQF 3JASB 3PLAC 4TV8A 1T0AA 3LDTA 4ERHA 2G9IA 1U3PA 3O85A 1H7MA 4TZZA 1GZ0A 3OONA 4TUYB 1W59A 3WGLA 3RA6A 4HNAB 1Q82H 1JJ2F 2BTQB 3V7QA 2N48A 1K73H 1KNJA 1DBFA 1IV1A 2VAMA 5HY2A 3CPQA 5MN6A 3IMPA 1W41A 3B6NA 5A2QM 5LXTB 3G4SF 2HQSC 3HKBB 3P0ZA 5FJ4C 2VGMA 4LCKA 4NWOB 5LYJA 4RHAA 4O4JB 3MBMA 2H8CA 5EYPB 2RB9A 2I6DA 4EI9A 4C81A 2ZVYA 3JCMM 3NVIB 4X1IA 5JQGA 2UYKA 1VQ8F 3K2XA 2GLZA 3KHNA 4I4TA 1VHAA 4O4IB 2LBXA 2FGYA 1VQ6F 4DXDA 1S72F 3WJQA 3WGNA 1VQ5F 1W5EA 2AIZP 4EB6A 3C9SA 4B62A 2VXYA 3VCZA 3MCQA 4X1KB 1VQ4F 2QEXF 1PF5A 4BVTA 3E1YA 2R751 3VYUC 2LCAA 5EB1B 3GHZA 4YJ2B 3AGKA 1W5BA 1Q81H 3ZP7A 3J81M 5MN5A 5GONB 2ZODA 4BT6A 1H47A 1TUBB 3N2KB 1UFYA 5FLXM 3JASA 4RQOA 1W57A 3S0WA 1CN7A 2EWCA 3HKDB 2MQEA 4TUYA 3N4ZA 4M8IA 1GO0A 3QHDA 3V3TA 1ZWZA 2CZWA 3LWPC 4KWEA 2PMPA 2FC3A 1GX1A 1FNKA 3K0TA 1YJWF 2LBWA 2UYNA 5LXTA 5DCVA 3HKBA 4BVQA 2F9ZC 3VI6A 2CW4A 1RLGA 4X20B 5GAPK 1YIJF 3HAXD 5LYJB 2IAFA 3F0GA 3KJJA 4BW0B 5EYPA 3RYHA 1M1KH 1YQNA 4BT3A 3I7TA 4C8GA 3I55F 1VK3A 2QI2A 1ODEA 4XCQA 5JQGB 4DRXA 2HP0A 4ZK7A 1UI9A 3WJRA 2UYJA 5IJ0A 2HX0A 4EB6B 2WALA 3FFMA 3HWUA 3CPWF 3VYTC 3CCVF 4YJ2A 5CA0B 1VH8A 5EWRA 3HKEB 5J2UB 3T80A 5GONA 1VQNF 1YGYA 3ERNA 3N2KA 1RA4A 3DDNA 5BMVB 3UT5B 3JARA 1E7KA 4X3LA 5FNVB 3HKDA 3LWQC 3TD4A 4LNUB 4WBNB 4C8IA 3S02A 3RYCB 1QD9A 5JCOC 3CCSF 2DT4A 2L26A 5EIBC 3CCJF 4B45A 3VOBA 4G4ZA 4G4WA 3C9UA 4ZI7B 1NMUB 4ZHQA 1IV2A 1TVKB 2UYNB 3D00A 1W581 1KQSF 4TV9B 4X20A 3WXMB 2Z1UA 1Q86H 2ZF8A 1JD1A 5HWEA 3G71F 3C8LA 3RYHB 2KTUA 3I56F 4FFBA 1W42A 5J2TB 3FD5A 1XBIA 2NMUA 4DRXB 1Z5WA 2CSLA 2Z1EA 1OAPA 2OHWA 1DT9A 2CWJA 2HP0B 2HS3A 5IJ0B 1QVFF 4O2AA 5JCOA 4G4YA 3VOAA 1QAHA 2RHLA 4BT2A 3C9TA 2AIFA 4ZOLA 3IEWA 4O4LA 3LWRC 3N2GB 3KJKA 1CLIA 3CC4F 4BY9D 5CA0A 4B46A 1VQ9F 3CYPB 3HKEA 5J2UA 1SA0A 5GINC 3JVHA 3RYFA 4BT4A 3OW2F 2GVIA 3JATA 3S0YA 3V7EA 2HS4A 5LP6C 2B33A 3WGJA 2ZVZA 3S06A 3F0EA 1NQ3A 3MDOA 3PAFA 4BT5A 5BMVA 3UT5A 4U3JB 1YITF 3LFOA 3JARB 1VQKF 2OTJF 5FNVA 3ZO8A 4X3MA 1VQVA 5LA6B 4ZHYB 4IHJB 4LNUA 4WBNA 2CVLA 3RYCA 1KD1H 1VQLF 2K1SA 5IYZA 2H6LA 3CB2A 3JAKB 4C4WC 4ZI7A 3M84A 4U39A 1NJIH 3FD6A 1TVKA 4EI8A 4ZHQB 1FFXA 1K9MH 3GYQA 3ESJA 5CA1B 4TV9A 1U3LA 3TD3A 3SIVA 3CCRF 2Z1TA 2BO1A 2VGNA 5LP6A 3EORA 3MCAB 4ZHWA 3F0DA 5IT9M 4FFBB 3F0FA 1COMA 5J2TA 2KTVA 2LBTA 1W40A 1SDSA 1H48A 2V9YA 3S0HA 3KIZA 1IV4A 1R1MA 2CHSA 1FSZA 2UZHA 5G4UC 3WGMA 1XRGA 2Z1FA 4O2AB 1RLUA 3WJPA 4BVRA 3M4SA 3RA5A 3RYIB 3L7QA 1U43A 3LWVC 4ZHVA 4ZOLB 4BT7A 1W5FA 3J7AR 3N2GA 4G4XA 4O4LB 5KMGA 3M1XA 3QTYA 1RQ2A 5KX5A 3LYBA 2VAWA 1SA0B 3RYFB 1W3EX 3JATB 5EO3A 3WPXA 3NMUC 1VQ7F 4EI7A 5HP7A 5HY4A 2QTPA 4U3JA 3CCMF 5EB0A 3S03A 4O4HA 5LA6A 4IHJA 3CCLF 5EZYA 3D01A 1IPAA 3VTIC 5IYZB 1QVGF 1U40A 3CC7F 2HRYA 3JAKA 2OTLF 4I55B 5JH7A 4G88A 3IKFA 3HKCB 1FFXB 2R6R1 5CA1A 2H8EA 3K12A 3JALB 2YXZA 3OBYA 1VQOF 3E22A 3J80M 2AMTA 1X7PA 2CHTA 5LP6B 2W8BC 3SIUA 4C8EA 3HJWC 1IV3A 3G6EF 5ITZB 3V4DA 3N4YA 4PWTA 5B8FA 2HS0A 1JY8A 3CCEF 1CK2A 1YJ9F 5G4VC 1X25A 2I6RA 3RYIA 1W5AA 5GANK 4BVSA 2KGWA 4NUTA 1N8RH 2BTOA 1Q7YH 5KMGB 3E20B 3IKEA 3NK6A 3ZP4A 4NQ3A 3Q8HA 4O2BA 2ALEA 3FPIA 5IJ9B 1JFFA 5KX5B 5MN4A 3VYSC 5AVMA 2ZOVA 3TD5A 1X52A 1ONIA 2IG8A 2GZLA 1YI2F 3OBWA 3CC2F 1SZQA 5HXUA 2DYYA 3MQWA 2OZBA 4O4HB 1YJNF 5HP8A 4YJ3A 5EZYB 4B5CA 3CMAF 1GO1A 2Z01A 5JVDA 4F6RB 5LOVA 4IIJA 3JAWA 4I55A 2Q1YA 1W2BF 5JH7B 1VQPF 3IR9A 3P4EA 4I50B 4X1YB 2RHHA 3CCUF 3HKCA
chains in the Genus database with same CATH topology
2H8CA 1Q8RA 2H8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H8C A;  1Q8R A;  2H8E A; 
#chains in the Genus database with same CATH topology
 2JNB A;  1W55 A;  5CB4 B;  3FBA A;  5C8Y B;  3CG6 A;  1K8A H;  4TV8 B;  3NVK E;  1M90 H;  5GIP C;  1OFU A;  3JAL A;  2PHN A;  2HRU A;  2IQQ A;  5HY0 A;  1J7H A;  3E22 B;  3CD6 F;  2ZAU A;  2VAP A;  5EIB D;  4HNA A;  3VMF B;  3ZOP A;  3IEQ A;  3HTN A;  5ITZ A;  2HP3 A;  4R40 B;  3VO8 A;  3U0O A;  5GIO C;  5HXZ A;  2Q1X A;  4G4V A;  1X7O A;  3VIU A;  2HVY D;  1PXW A;  4O4J A;  2KG4 A;  2RHO A;  3WPW A;  2QA4 F;  3CXC F;  3C9R A;  3NK7 A;  3QUW A;  4O2B B;  5IJ9 A;  4X1I B;  1JFF B;  3KE1 A;  2OTM A;  2YYE A;  4I4T B;  4O4I A;  1Z5V A;  3F6M A;  3D54 A;  3I3F A;  5HY1 A;  3CME F;  3LWO C;  4E6E A;  1KC8 H;  1FNJ A;  3JAM M;  1Q8R A;  3P10 A;  4X1K A;  1VQM F;  3K14 A;  3CYQ A;  5EAZ A;  3R0P A;  4YJ3 B;  3CCQ F;  1JN1 A;  4F6R A;  5JVD B;  5LOV B;  1T0K B;  2P6Y A;  4IIJ B;  1XV2 A;  2UYP A;  2BTU A;  1XHO A;  3JAW B;  1RQ7 A;  3GTZ A;  3LME A;  3DC2 A;  4I50 A;  1QU9 A;  4X1Y A;  3WGK A;  3RE3 A;  2RHJ A;  1KNK A;  1TUB A;  3BYQ A;  3ELC A;  3ON1 A;  5CB4 A;  4C82 A;  5C8Y A;  1YHQ F;  3JAS B;  3PLA C;  4TV8 A;  1T0A A;  3LDT A;  4ERH A;  2G9I A;  1U3P A;  3O85 A;  1H7M A;  4TZZ A;  1GZ0 A;  3OON A;  4TUY B;  1W59 A;  3WGL A;  3RA6 A;  4HNA B;  1Q82 H;  1JJ2 F;  2BTQ B;  3V7Q A;  2N48 A;  1K73 H;  1KNJ A;  1DBF A;  1IV1 A;  2VAM A;  5HY2 A;  3CPQ A;  5MN6 A;  3IMP A;  1W41 A;  3B6N A;  5A2Q M;  5LXT B;  3G4S F;  2HQS C;  3HKB B;  3P0Z A;  5FJ4 C;  2VGM A;  4LCK A;  4NWO B;  5LYJ A;  4RHA A;  4O4J B;  3MBM A;  2H8C A;  5EYP B;  2RB9 A;  2I6D A;  4EI9 A;  4C81 A;  2ZVY A;  3JCM M;  3NVI B;  4X1I A;  5JQG A;  2UYK A;  1VQ8 F;  3K2X A;  2GLZ A;  3KHN A;  4I4T A;  1VHA A;  4O4I B;  2LBX A;  2FGY A;  1VQ6 F;  4DXD A;  1S72 F;  3WJQ A;  3WGN A;  1VQ5 F;  1W5E A;  2AIZ P;  4EB6 A;  3C9S A;  4B62 A;  2VXY A;  3VCZ A;  3MCQ A;  4X1K B;  1VQ4 F;  2QEX F;  1PF5 A;  4BVT A;  3E1Y A;  2R75 1;  3VYU C;  2LCA A;  5EB1 B;  3GHZ A;  4YJ2 B;  3AGK A;  1W5B A;  1Q81 H;  3ZP7 A;  3J81 M;  5MN5 A;  5GON B;  2ZOD A;  4BT6 A;  1H47 A;  1TUB B;  3N2K B;  1UFY A;  5FLX M;  3JAS A;  4RQO A;  1W57 A;  3S0W A;  1CN7 A;  2EWC A;  3HKD B;  2MQE A;  4TUY A;  3N4Z A;  4M8I A;  1GO0 A;  3QHD A;  3V3T A;  1ZWZ A;  2CZW A;  3LWP C;  4KWE A;  2PMP A;  2FC3 A;  1GX1 A;  1FNK A;  3K0T A;  1YJW F;  2LBW A;  2UYN A;  5LXT A;  5DCV A;  3HKB A;  4BVQ A;  2F9Z C;  3VI6 A;  2CW4 A;  1RLG A;  4X20 B;  5GAP K;  1YIJ F;  3HAX D;  5LYJ B;  2IAF A;  3F0G A;  3KJJ A;  4BW0 B;  5EYP A;  3RYH A;  1M1K H;  1YQN A;  4BT3 A;  3I7T A;  4C8G A;  3I55 F;  1VK3 A;  2QI2 A;  1ODE A;  4XCQ A;  5JQG B;  4DRX A;  2HP0 A;  4ZK7 A;  1UI9 A;  3WJR A;  2UYJ A;  5IJ0 A;  2HX0 A;  4EB6 B;  2WAL A;  3FFM A;  3HWU A;  3CPW F;  3VYT C;  3CCV F;  4YJ2 A;  5CA0 B;  1VH8 A;  5EWR A;  3HKE B;  5J2U B;  3T80 A;  5GON A;  1VQN F;  1YGY A;  3ERN A;  3N2K A;  1RA4 A;  3DDN A;  5BMV B;  3UT5 B;  3JAR A;  1E7K A;  4X3L A;  5FNV B;  3HKD A;  3LWQ C;  3TD4 A;  4LNU B;  4WBN B;  4C8I A;  3S02 A;  3RYC B;  1QD9 A;  5JCO C;  3CCS F;  2DT4 A;  2L26 A;  5EIB C;  3CCJ F;  4B45 A;  3VOB A;  4G4Z A;  4G4W A;  3C9U A;  4ZI7 B;  1NMU B;  4ZHQ A;  1IV2 A;  1TVK B;  2UYN B;  3D00 A;  1W58 1;  1KQS F;  4TV9 B;  4X20 A;  3WXM B;  2Z1U A;  1Q86 H;  2ZF8 A;  1JD1 A;  5HWE A;  3G71 F;  3C8L A;  3RYH B;  2KTU A;  3I56 F;  4FFB A;  1W42 A;  5J2T B;  3FD5 A;  1XBI A;  2NMU A;  4DRX B;  1Z5W A;  2CSL A;  2Z1E A;  1OAP A;  2OHW A;  1DT9 A;  2CWJ A;  2HP0 B;  2HS3 A;  5IJ0 B;  1QVF F;  4O2A A;  5JCO A;  4G4Y A;  3VOA A;  1QAH A;  2RHL A;  4BT2 A;  3C9T A;  2AIF A;  4ZOL A;  3IEW A;  4O4L A;  3LWR C;  3N2G B;  3KJK A;  1CLI A;  3CC4 F;  4BY9 D;  5CA0 A;  4B46 A;  1VQ9 F;  3CYP B;  3HKE A;  5J2U A;  1SA0 A;  5GIN C;  3JVH A;  3RYF A;  4BT4 A;  3OW2 F;  2GVI A;  3JAT A;  3S0Y A;  3V7E A;  2HS4 A;  5LP6 C;  2B33 A;  3WGJ A;  2ZVZ A;  3S06 A;  3F0E A;  1NQ3 A;  3MDO A;  3PAF A;  4BT5 A;  5BMV A;  3UT5 A;  4U3J B;  1YIT F;  3LFO A;  3JAR B;  1VQK F;  2OTJ F;  5FNV A;  3ZO8 A;  4X3M A;  1VQV A;  5LA6 B;  4ZHY B;  4IHJ B;  4LNU A;  4WBN A;  2CVL A;  3RYC A;  1KD1 H;  1VQL F;  2K1S A;  5IYZ A;  2H6L A;  3CB2 A;  3JAK B;  4C4W C;  4ZI7 A;  3M84 A;  4U39 A;  1NJI H;  3FD6 A;  1TVK A;  4EI8 A;  4ZHQ B;  1FFX A;  1K9M H;  3GYQ A;  3ESJ A;  5CA1 B;  4TV9 A;  1U3L A;  3TD3 A;  3SIV A;  3CCR F;  2Z1T A;  2BO1 A;  2VGN A;  5LP6 A;  3EOR A;  3MCA B;  4ZHW A;  3F0D A;  5IT9 M;  4FFB B;  3F0F A;  1COM A;  5J2T A;  2KTV A;  2LBT A;  1W40 A;  1SDS A;  1H48 A;  2V9Y A;  3S0H A;  3KIZ A;  1IV4 A;  1R1M A;  2CHS A;  1FSZ A;  2UZH A;  5G4U C;  3WGM A;  1XRG A;  2Z1F A;  4O2A B;  1RLU A;  3WJP A;  4BVR A;  3M4S A;  3RA5 A;  3RYI B;  3L7Q A;  1U43 A;  3LWV C;  4ZHV A;  4ZOL B;  4BT7 A;  1W5F A;  3J7A R;  3N2G A;  4G4X A;  4O4L B;  5KMG A;  3M1X A;  3QTY A;  1RQ2 A;  5KX5 A;  3LYB A;  2VAW A;  1SA0 B;  3RYF B;  1W3E X;  3JAT B;  5EO3 A;  3WPX A;  3NMU C;  1VQ7 F;  4EI7 A;  5HP7 A;  5HY4 A;  2QTP A;  4U3J A;  3CCM F;  5EB0 A;  3S03 A;  4O4H A;  5LA6 A;  4IHJ A;  3CCL F;  5EZY A;  3D01 A;  1IPA A;  3VTI C;  5IYZ B;  1QVG F;  1U40 A;  3CC7 F;  2HRY A;  3JAK A;  2OTL F;  4I55 B;  5JH7 A;  4G88 A;  3IKF A;  3HKC B;  1FFX B;  2R6R 1;  5CA1 A;  2H8E A;  3K12 A;  3JAL B;  2YXZ A;  3OBY A;  1VQO F;  3E22 A;  3J80 M;  2AMT A;  1X7P A;  2CHT A;  5LP6 B;  2W8B C;  3SIU A;  4C8E A;  3HJW C;  1IV3 A;  3G6E F;  5ITZ B;  3V4D A;  3N4Y A;  4PWT A;  5B8F A;  2HS0 A;  1JY8 A;  3CCE F;  1CK2 A;  1YJ9 F;  5G4V C;  1X25 A;  2I6R A;  3RYI A;  1W5A A;  5GAN K;  4BVS A;  2KGW A;  4NUT A;  1N8R H;  2BTO A;  1Q7Y H;  5KMG B;  3E20 B;  3IKE A;  3NK6 A;  3ZP4 A;  4NQ3 A;  3Q8H A;  4O2B A;  2ALE A;  3FPI A;  5IJ9 B;  1JFF A;  5KX5 B;  5MN4 A;  3VYS C;  5AVM A;  2ZOV A;  3TD5 A;  1X52 A;  1ONI A;  2IG8 A;  2GZL A;  1YI2 F;  3OBW A;  3CC2 F;  1SZQ A;  5HXU A;  2DYY A;  3MQW A;  2OZB A;  4O4H B;  1YJN F;  5HP8 A;  4YJ3 A;  5EZY B;  4B5C A;  3CMA F;  1GO1 A;  2Z01 A;  5JVD A;  4F6R B;  5LOV A;  4IIJ A;  3JAW A;  4I55 A;  2Q1Y A;  1W2B F;  5JH7 B;  1VQP F;  3IR9 A;  3P4E A;  4I50 B;  4X1Y B;  2RHH A;  3CCU F;  3HKC A; 
#chains in the Genus database with same CATH homology
 2H8C A;  1Q8R A;  2H8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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