The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
143
|
structure length |
143
|
Chain Sequence |
NMYSYKKIGNKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQVYLHLHITVGRSDYSALAGHLLSAIQNGAGEFVVEDYSERISRTYNPDLGLNIYDFER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Putative DNA binding protein (NP_810029.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.50 A resolution
rcsb |
| molecule keywords |
Putative DNA binding protein
|
| molecule tags |
Metal binding protein
|
| source organism |
Bacteroides thetaiotaomicron vpi-5482
|
| total genus |
38
|
| structure length |
143
|
| sequence length |
143
|
| chains with identical sequence |
B, C
|
| ec nomenclature | |
| pdb deposition date | 2009-06-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03479 | DUF296 | Plants and Prokaryotes Conserved (PCC) domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 |
#chains in the Genus database with same CATH superfamily 3HWU A; 3HTN A; 2HX0 A; 2NMU A; 4BT6 A; 4BT2 A; 2H6L A; 2DT4 A; 4BT7 A; 4BT5 A; 4BT3 A; 4BT4 A; 1XV2 A; 2P6Y A; #chains in the Genus database with same CATH topology 3VO8 A; 1PF5 A; 1YJ9 F; 4O4L B; 5MN6 A; 3M84 A; 1IV1 A; 5IT9 M; 4C81 A; 3VTI C; 5BMV A; 2DT4 A; 1FNK A; 3MDO A; 5MN4 A; 2HP0 B; 4TZZ A; 5LP6 B; 3ON1 A; 4HNA A; 4TUY B; 5EYP A; 4YJ2 A; 1S72 F; 4DRX A; 3C9U A; 4O4I A; 3WJQ A; 4FFB A; 1KNJ A; 2GLZ A; 4IHJ A; 2GZL A; 2CHS A; 4XCQ A; 4TV8 A; 1M90 H; 3LWP C; 5DCV A; 4BT5 A; 4ZI7 A; 1SZQ A; 3AGK A; 3N2G B; 1VQK F; 5LOV A; 2IG8 A; 3N2K A; 3K0T A; 2L26 A; 4G4Y A; 5LA6 B; 3I56 F; 3CCE F; 3D01 A; 1VQ8 F; 3LWR C; 3JAT B; 5LYJ B; 4O4L A; 4KWE A; 4BW0 B; 1VH8 A; 5IJ9 B; 3CC7 F; 4B62 A; 1YHQ F; 2LBT A; 4C8I A; 3VCZ A; 5HY2 A; 1X25 A; 3CXC F; 3F6M A; 2HP0 A; 3VOA A; 1U40 A; 1JN1 A; 1R1M A; 5LP6 A; 5FLX M; 4TUY A; 4WBN B; 3JAM M; 2CW4 A; 3BYQ A; 2HX0 A; 2H6L A; 3C9R A; 1GO1 A; 3ERN A; 3FD5 A; 1H48 A; 4NUT A; 1UI9 A; 2Z1T A; 2AIF A; 5MN5 A; 1RLG A; 1W42 A; 1K9M H; 3G6E F; 1X7O A; 1KNK A; 4IIJ B; 4RQO A; 3VOB A; 3N2G A; 4EB6 B; 3CYP B; 4BVQ A; 1XRG A; 5LA6 A; 2BO1 A; 4ZHW A; 3JAT A; 5LYJ A; 3S06 A; 1QD9 A; 3PLA C; 5J2T B; 1W59 A; 5IJ9 A; 5JH7 B; 3CPQ A; 1COM A; 1QAH A; 3S03 A; 4BVT A; 1Q8R A; 2CSL A; 5A2Q M; 4TV9 B; 1FFX B; 2LBW A; 3CD6 F; 2OTJ F; 1T0A A; 4WBN A; 3CC2 F; 2ZF8 A; 3CPW F; 5G4V C; 1YGY A; 2N48 A; 3NMU C; 4F6R B; 2LBX A; 3S0H A; 3E1Y A; 4IIJ A; 4EI8 A; 3SIV A; 5GIP C; 4EB6 A; 3CG6 A; 3HKC B; 3ZO8 A; 4C8G A; 4O4H B; 3V7Q A; 4RHA A; 2UYN B; 3F0G A; 1FNJ A; 3K2X A; 2H8C A; 4LCK A; 4NQ3 A; 2LCA A; 1VQP F; 1OFU A; 5HP8 A; 2RHH A; 2YXZ A; 5J2T A; 5ITZ B; 3S02 A; 5JH7 A; 5EIB C; 1VQM F; 1M1K H; 4C82 A; 2HVY D; 4BVR A; 1Z5V A; 3P0Z A; 4ZHY B; 5CB4 B; 4TV9 A; 3LME A; 4C8E A; 4B45 A; 1XHO A; 3RYF B; 2B33 A; 3OON A; 3S0W A; 2G9I A; 4DXD A; 2UYK A; 3ELC A; 2Q1X A; 3V4D A; 1VK3 A; 1VHA A; 5IYZ B; 1J7H A; 2I6R A; 2QTP A; 3MQW A; 4U39 A; 1X52 A; 3ZOP A; 1IV4 A; 1T0K B; 3HKC A; 4G4V A; 4O4H A; 3NVK E; 1QU9 A; 2UYN A; 2UYP A; 4G4W A; 4YJ3 B; 4ZHV A; 5ITZ A; 5J2U B; 2UYJ A; 3UT5 B; 2ZOD A; 2Q1Y A; 3CC4 F; 4U3J B; 3VYT C; 3HKD B; 3ZP4 A; 3KIZ A; 3J81 M; 2AIZ P; 5HY4 A; 5CB4 A; 1VQ9 F; 2K1S A; 1Q86 H; 2AMT A; 3N4Y A; 2YYE A; 2BTU A; 3RYF A; 3ZP7 A; 1ZWZ A; 2ALE A; 1ODE A; 2VXY A; 1KD1 H; 1W55 A; 5IYZ A; 3RA6 A; 1IPA A; 4X1I B; 2FC3 A; 3CCL F; 3IR9 A; 4ZHQ B; 3CME F; 2ZVZ A; 3M4S A; 1YJW F; 1YJN F; 3HKE B; 2WAL A; 2QI2 A; 4O4J B; 4ZOL B; 3RYI B; 4ERH A; 1UFY A; 3DC2 A; 3MCA B; 2HRY A; 4YJ3 A; 5J2U A; 3UT5 A; 2KG4 A; 3C8L A; 5GON B; 4B5C A; 2F9Z C; 1N8R H; 4U3J A; 4O2A B; 3LWO C; 1DT9 A; 3HKD A; 3IEQ A; 3EOR A; 5JQG B; 1SA0 B; 5LXT B; 1W5A A; 5G4U C; 4NWO B; 1U3P A; 5FNV B; 5HWE A; 1IV3 A; 3HJW C; 3F0E A; 3IKF A; 4LNU B; 1NJI H; 1K73 H; 3RYC B; 3K12 A; 3WPX A; 1YI2 F; 1K8A H; 5GIO C; 3KJJ A; 1JD1 A; 4X1I A; 4O2B B; 4ZHQ A; 3E22 B; 4I4T B; 1W2B F; 2RHJ A; 3U0O A; 5HP7 A; 3T80 A; 1KC8 H; 3HKE A; 3K14 A; 2VGN A; 3IMP A; 4O4J A; 4ZOL A; 3RYI A; 4PWT A; 2KTU A; 3I55 F; 3P4E A; 1VQ5 F; 1W5B A; 3NK6 A; 4C4W C; 1H7M A; 2VAM A; 5GON A; 5HXU A; 1Q81 H; 3FBA A; 4O2A A; 3LFO A; 2QA4 F; 2OZB A; 5JQG A; 1SA0 A; 1JFF B; 5LXT A; 1TVK B; 3F0D A; 4X3L A; 3TD4 A; 5JVD B; 3LWQ C; 1NQ3 A; 5FNV A; 5JCO C; 4X1Y B; 3CCM F; 1PXW A; 1RQ7 A; 4LNU A; 3RYC A; 1YIJ F; 5KMG B; 2RHL A; 3FD6 A; 3KHN A; 5HXZ A; 2RHO A; 4B46 A; 3JAK B; 5CA0 B; 3LDT A; 4O2B A; 3JAR B; 3E22 A; 3D00 A; 1FFX A; 4I4T A; 3HKB B; 1W41 A; 2CWJ A; 3JCM M; 4M8I A; 3JAS B; 1W58 1; 2EWC A; 3NK7 A; 3HWU A; 4X1K B; 2QEX F; 3J7A R; 3F0F A; 1DBF A; 5EB1 B; 4I50 B; 4BT6 A; 4F6R A; 3WGN A; 5EAZ A; 3OW2 F; 2VAW A; 3CCU F; 1KQS F; 1JFF A; 2JNB A; 2Z1E A; 2BTO A; 1TVK A; 2HS4 A; 2H8E A; 4G88 A; 3WGL A; 3FPI A; 2ZOV A; 1TUB B; 3I3F A; 5JVD A; 3G4S F; 3WGK A; 1QVG F; 4X1Y A; 2PMP A; 3MCQ A; 5GIN C; 1QVF F; 2HRU A; 5KMG A; 3WGJ A; 3GYQ A; 3TD3 A; 3CMA F; 1GZ0 A; 1VQN F; 3JAK A; 1W57 A; 3R0P A; 5CA0 A; 5HY1 A; 3G71 F; 3ESJ A; 3JAR A; 3JAL B; 3O85 A; 3HKB A; 3KE1 A; 1Q7Y H; 1XBI A; 1NMU B; 5B8F A; 1VQV A; 3JAS A; 3D54 A; 2HS3 A; 3CCS F; 4BT4 A; 3JAW B; 5LP6 C; 4X3M A; 1GO0 A; 3MBM A; 4X1K A; 3RE3 A; 3WJR A; 3GTZ A; 4I50 A; 1JY8 A; 3WGM A; 4E6E A; 5C8Y B; 2HP3 A; 3OBY A; 3LWV C; 2OTL F; 1X7P A; 1JJ2 F; 2RB9 A; 2NMU A; 1TUB A; 3CB2 A; 5EB0 A; 4EI7 A; 5AVM A; 5CA1 B; 2V9Y A; 1RA4 A; 3Q8H A; 2UZH A; 1VQ6 F; 3V3T A; 4BY9 D; 2GVI A; 3JVH A; 1Z5W A; 5GAP K; 3J80 M; 1W5F A; 3RA5 A; 4BVS A; 2W8B C; 3VYU C; 3CCJ F; 3M1X A; 3JAL A; 3QHD A; 3CYQ A; 4G4Z A; 3TD5 A; 1ONI A; 3V7E A; 3JAW A; 2VGM A; 3S0Y A; 2ZAU A; 3WJP A; 2IAF A; 4BT7 A; 1VQ4 F; 2OTM A; 3VIU A; 1E7K A; 1W40 A; 2BTQ B; 2CHT A; 5C8Y A; 3P10 A; 3VI6 A; 5EZY B; 2KTV A; 3VMF B; 2KGW A; 3FFM A; 3RYH B; 4X20 B; 5GAN K; 5CA1 A; 5EWR A; 4I55 B; 5FJ4 C; 3WPW A; 5HY0 A; 2R75 1; 2DYY A; 3HTN A; 1SDS A; 1IV2 A; 4R40 B; 4EI9 A; 3KJK A; 1OAP A; 3L7Q A; 3E20 B; 3PAF A; 2I6D A; 5KX5 B; 2CVL A; 3CCV F; 2ZVY A; 4BT2 A; 2PHN A; 3IKE A; 5IJ0 B; 1CLI A; 2CZW A; 2VAP A; 2P6Y A; 1U3L A; 3C9S A; 3IEW A; 3LYB A; 5EIB D; 3OBW A; 3SIU A; 2FGY A; 1GX1 A; 1Q82 H; 1U43 A; 5BMV B; 1CK2 A; 1VQ7 F; 3NVI B; 2R6R 1; 3C9T A; 4G4X A; 1XV2 A; 2Z01 A; 3I7T A; 3QTY A; 2Z1F A; 1W3E X; 5EZY A; 1VQO F; 3HAX D; 3CCQ F; 3RYH A; 1W5E A; 4HNA B; 4YJ2 B; 5EYP B; 4X20 A; 4BT3 A; 3CCR F; 1RLU A; 2MQE A; 3GHZ A; 4DRX B; 4I55 A; 4O4I B; 1YQN A; 2Z1U A; 3DDN A; 2IQQ A; 3WXM B; 2OHW A; 4FFB B; 5EO3 A; 3QUW A; 4IHJ B; 4TV8 B; 3B6N A; 5KX5 A; 2HQS C; 1VQL F; 4ZK7 A; 3N4Z A; 5JCO A; 4ZI7 B; 1H47 A; 1YIT F; 2HS0 A; 5IJ0 A; 5LOV B; 3N2K B; 1FSZ A; 1CN7 A; 3VYS C; 1RQ2 A; #chains in the Genus database with same CATH homology 3HWU A; 3HTN A; 2HX0 A; 2NMU A; 4BT6 A; 4BT2 A; 2H6L A; 2DT4 A; 4BT7 A; 4BT5 A; 4BT3 A; 4BT4 A; 1XV2 A; 2P6Y A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
